4.0:Information of module
Mutant pif1-2 (Dark etiol)
In comparison with Cycloheximide 3 h  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009746 response to hexose BP 1.161e-05
GO:0034284 response to monosaccharide BP 1.309e-05
GO:0055082 cellular chemical homeostasis BP 8.892e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 2.488e-12
GO:0019684 photosynthesis, light reaction BP 1.351e-08
GO:0044711 single-organism biosynthetic process BP 4.431e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Mutant pif1-2 (Dark etiol)		 Log2 signal ratio
Cycloheximide 3 h
1 260742_at AT1G15050 IAA34, indole-3-acetic acid inducible 34 0.214 0.184
2 267451_at AT2G33710 [Integrase-type DNA-binding superfamily protein] 0.175 1.280
3 246773_at AT5G27510 [Protein kinase superfamily protein] 0.174 0.168
4 258541_at AT3G07000 [Cysteine/Histidine-rich C1 domain family protein] 0.173 0.390
5 251392_at AT3G60880 DHDPS, DIHYDRODIPICOLINATE SYNTHASE, DHDPS1, dihydrodipicolinate synthase 1 0.165 -0.198
6 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor 0.159 -0.203
7 255285_at AT4G04630 unknown 0.148 -0.033
8 266361_at AT2G32450 [Calcium-binding tetratricopeptide family protein] 0.143 0.050
9 253261_at AT4G34430 ATSWI3D, SWITCH/SUCROSE NONFERMENTING 3D, CHB3 0.134 0.030
10 264777_at AT1G08630 THA1, threonine aldolase 1 0.133 0.023
11 263189_at AT1G36100 [myosin heavy chain-related] 0.133 0.032
12 245186_at AT1G67710 ARR11, response regulator 11 0.132 0.067
13 246639_x_at AT5G34895 [similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1)] 0.129 0.014
14 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] 0.127 0.913
15 254421_at AT4G21550 VAL3, VP1/ABI3-like 3 0.121 -0.033
16 263290_at AT2G10930 unknown 0.116 0.028
17 248240_at AT5G53950 ANAC098, Arabidopsis NAC domain containing protein 98, ATCUC2, CUP-SHAPED COTYLEDON 2, CUC2, CUP-SHAPED COTYLEDON 2 0.112 -0.056
18 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.112 -0.259
19 265585_at AT2G20000 CDC27b, HBT, HOBBIT 0.111 -0.094
20 250938_at AT5G03180 [RING/U-box superfamily protein] 0.110 0.045
21 264379_at AT2G25200 unknown 0.110 0.063
22 251320_at AT3G61530 PANB2 0.109 -0.066
23 257453_at AT1G65130 [Ubiquitin carboxyl-terminal hydrolase-related protein] 0.105 -0.031
24 264345_at AT1G11915 unknown 0.104 0.015
25 267487_at AT2G19100 [non-LTR retrotransposon family (LINE), has a 3.2e-33 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)] 0.103 -0.062
26 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 0.101 -0.306
27 267620_at AT2G39640 [glycosyl hydrolase family 17 protein] 0.098 0.069
28 267035_at AT2G38400 AGT3, alanine:glyoxylate aminotransferase 3 0.098 -0.114
29 256006_at AT1G34070 unknown 0.095 0.010
30 259166_at AT3G01670 AtSEOR2, Arabidopsis thaliana sieve element occlusion-related 2, SEOa, sieve element occlusion a, SEOR2, sieve element occlusion-related 2 0.094 -0.162
31 261308_at AT1G48480 RKL1, receptor-like kinase 1 0.094 -0.233
32 245447_at AT4G16820 DALL1, DAD1-Like Lipase 1, PLA-I{beta]2, phospholipase A I beta 2 0.094 0.913
33 246703_at AT5G28080 WNK9 0.091 0.007
34 247876_at AT5G57730 unknown 0.091 0.021
35 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 -0.504 -0.227
36 255805_at AT4G10240 bbx23, B-box domain protein 23 -0.497 -0.066
37 247878_at AT5G57760 unknown -0.275 -0.458
38 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 -0.254 -0.331
39 266423_at AT2G41340 RPB5D, RNA polymerase II fifth largest subunit, D -0.249 -0.010
40 246228_at AT4G36430 [Peroxidase superfamily protein] -0.234 -0.228
41 253233_at AT4G34290 [SWIB/MDM2 domain superfamily protein] -0.232 -0.182
42 260343_at AT1G69200 FLN2, fructokinase-like 2 -0.217 -0.312
43 249675_at AT5G35940 [Mannose-binding lectin superfamily protein] -0.208 -0.204
44 259529_at AT1G12400 [Nucleotide excision repair, TFIIH, subunit TTDA] -0.185 -0.398
45 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 -0.183 -0.168
46 245354_at AT4G17600 LIL3:1 -0.182 -0.135
47 248435_at AT5G51210 OLEO3, oleosin3 -0.179 -0.043
48 249830_at AT5G23300 PYRD, pyrimidine d -0.175 -0.143
49 249010_at AT5G44580 unknown -0.172 0.041
50 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.161 -0.309
51 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] -0.160 -0.238
52 255243_at AT4G05590 unknown -0.158 -0.083
53 252362_at AT3G48500 PDE312, PIGMENT DEFECTIVE 312, PTAC10, PLASTID TRANSCRIPTIONALLY ACTIVE 10, TAC10 -0.156 -0.100
54 244966_at ATCG00600 PETG -0.153 -0.258
55 247151_at AT5G65640 bHLH093, beta HLH protein 93 -0.150 -0.105
56 253720_at AT4G29270 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.149 -0.344
57 251958_at AT3G53560 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.148 -0.138
58 266957_at AT2G34640 HMR, HEMERA, PTAC12, plastid transcriptionally active 12, TAC12 -0.148 -0.277
59 254228_at AT4G23620 [Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain] -0.143 -0.087
60 266608_at AT2G35500 SKL2, shikimate kinase-like 2 -0.142 -0.107
61 266587_at AT2G14880 [SWIB/MDM2 domain superfamily protein] -0.141 -0.202
62 249826_at AT5G23310 FSD3, Fe superoxide dismutase 3 -0.134 -0.100
63 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] -0.130 0.151
64 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.130 -0.141
65 264782_at AT1G08810 AtMYB60, myb domain protein 60, MYB60, myb domain protein 60 -0.129 -0.120
66 265704_at AT2G03420 unknown -0.129 -0.237
67 255302_at AT4G04830 ATMSRB5, methionine sulfoxide reductase B5, MSRB5, methionine sulfoxide reductase B5 -0.127 -0.864