4.0:Information of module
lateral root cap-columella pBRN2 8h BL
In comparison with root cap pGL2 3h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009750 response to fructose BP 2.457e-04
GO:0051252 regulation of RNA metabolic process BP 2.660e-04
GO:0006355 regulation of transcription, DNA-templat... BP 3.290e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 2.539e-14
GO:1901700 response to oxygen-containing compound BP 5.157e-14
GO:0042221 response to chemical BP 2.242e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
lateral root cap-columella pBRN2 8h BL		 Log2 signal ratio
root cap pGL2 3h BL
1 AT4G21200 AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 4.438 4.566
2 AT4G31900 AT4G31900 CHR7, chromatin remodeling 7, PKR2, PICKLE RELATED 2 4.193 0.940
3 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 4.008 2.345
4 AT4G08645 AT4G08645 [pseudogene] 3.976 0.022
5 AT4G36450 AT4G36450 ATMPK14, mitogen-activated protein kinase 14, MPK14, MPK14, mitogen-activated protein kinase 14 3.893 0.022
6 AT1G29500 AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 3.670 3.455
7 AT3G09790 AT3G09790 UBQ8, ubiquitin 8 3.662 1.007
8 AT4G26260 AT4G26260 MIOX4, myo-inositol oxygenase 4 3.594 2.687
9 AT4G30540 AT4G30540 [Class I glutamine amidotransferase-like superfamily protein] 3.251 0.022
10 AT3G06962 AT3G06962 other RNA 3.232 0.792
11 AT2G15880 AT2G15880 [Leucine-rich repeat (LRR) family protein] 3.073 -1.246
12 AT5G55270 AT5G55270 unknown 2.919 -0.282
13 AT1G15630 AT1G15630 unknown 2.873 1.279
14 AT2G43890 AT2G43890 [Pectin lyase-like superfamily protein] 2.782 2.353
15 AT1G14600 AT1G14600 [Homeodomain-like superfamily protein] 2.733 0.168
16 AT5G51920 AT5G51920 [Pyridoxal phosphate (PLP)-dependent transferases superfamily protein] 2.720 0.400
17 AT1G47603 AT1G47603 ATPUP19, purine permease 19, PUP19, purine permease 19 2.665 2.593
18 AT5G62490 AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B 2.633 -2.301
19 AT1G15330 AT1G15330 [Cystathionine beta-synthase (CBS) protein] 2.610 1.938
20 AT5G40010 AT5G40010 AATP1, AAA-ATPase 1, ASD, ATPase-in-Seed-Development 2.562 0.625
21 AT3G50160 AT3G50160 unknown 2.562 0.517
22 AT5G57785 AT5G57785 unknown -4.900 -2.483
23 AT1G36622 AT1G36622 unknown -4.576 -0.941
24 AT3G09280 AT3G09280 unknown -3.850 -3.614
25 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -3.824 -1.854
26 AT3G62760 AT3G62760 ATGSTF13 -3.666 -3.288
27 AT5G06860 AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 -3.628 -0.974
28 AT1G02450 AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 -3.610 -1.450
29 AT5G44582 AT5G44582 unknown -3.573 -2.101
30 AT4G02330 AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -3.380 0.851
31 AT4G24972 AT4G24972 TPD1, TAPETUM DETERMINANT 1 -3.322 -2.246
32 AT2G20835 AT2G20835 unknown -3.314 0.190
33 AT5G40590 AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] -3.195 -0.987
34 AT1G53130 AT1G53130 GRI, GRIM REAPER -3.161 -1.319
35 AT5G24110 AT5G24110 ATWRKY30, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY30, WRKY DNA-binding protein 30 -3.042 -0.650
36 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -2.993 -2.721
37 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.984 -1.972
38 AT1G76220 AT1G76220 unknown -2.979 -4.618
39 AT5G62210 AT5G62210 [Embryo-specific protein 3, (ATS3)] -2.856 -1.253
40 AT1G01470 AT1G01470 LEA14, LATE EMBRYOGENESIS ABUNDANT 14, LSR3, LIGHT STRESS-REGULATED 3 -2.659 -0.169
41 AT1G70880 AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -2.615 -0.923