4.0:Information of module
lateral root cap-columella pBRN2 8h BL
In comparison with QC pSCR 8h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009750 response to fructose BP 2.457e-04
GO:0051252 regulation of RNA metabolic process BP 2.660e-04
GO:0006355 regulation of transcription, DNA-templat... BP 3.290e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 2.539e-14
GO:1901700 response to oxygen-containing compound BP 5.157e-14
GO:0042221 response to chemical BP 2.242e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
lateral root cap-columella pBRN2 8h BL		 Log2 signal ratio
QC pSCR 8h BL
1 AT4G21200 AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 4.438 0.972
2 AT4G31900 AT4G31900 CHR7, chromatin remodeling 7, PKR2, PICKLE RELATED 2 4.193 -0.288
3 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 4.008 1.685
4 AT4G08645 AT4G08645 [pseudogene] 3.976 -0.288
5 AT4G36450 AT4G36450 ATMPK14, mitogen-activated protein kinase 14, MPK14, MPK14, mitogen-activated protein kinase 14 3.893 1.085
6 AT1G29500 AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 3.670 2.526
7 AT3G09790 AT3G09790 UBQ8, ubiquitin 8 3.662 0.914
8 AT4G26260 AT4G26260 MIOX4, myo-inositol oxygenase 4 3.594 1.322
9 AT4G30540 AT4G30540 [Class I glutamine amidotransferase-like superfamily protein] 3.251 -0.288
10 AT3G06962 AT3G06962 other RNA 3.232 0.237
11 AT2G15880 AT2G15880 [Leucine-rich repeat (LRR) family protein] 3.073 0.241
12 AT5G55270 AT5G55270 unknown 2.919 0.237
13 AT1G15630 AT1G15630 unknown 2.873 -0.443
14 AT2G43890 AT2G43890 [Pectin lyase-like superfamily protein] 2.782 1.725
15 AT1G14600 AT1G14600 [Homeodomain-like superfamily protein] 2.733 0.760
16 AT5G51920 AT5G51920 [Pyridoxal phosphate (PLP)-dependent transferases superfamily protein] 2.720 0.636
17 AT1G47603 AT1G47603 ATPUP19, purine permease 19, PUP19, purine permease 19 2.665 1.645
18 AT5G62490 AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B 2.633 1.480
19 AT1G15330 AT1G15330 [Cystathionine beta-synthase (CBS) protein] 2.610 1.506
20 AT5G40010 AT5G40010 AATP1, AAA-ATPase 1, ASD, ATPase-in-Seed-Development 2.562 0.256
21 AT3G50160 AT3G50160 unknown 2.562 -0.288
22 AT5G57785 AT5G57785 unknown -4.900 -1.002
23 AT1G36622 AT1G36622 unknown -4.576 -0.980
24 AT3G09280 AT3G09280 unknown -3.850 0.224
25 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -3.824 -3.491
26 AT3G62760 AT3G62760 ATGSTF13 -3.666 -5.349
27 AT5G06860 AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 -3.628 -1.124
28 AT1G02450 AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 -3.610 -0.288
29 AT5G44582 AT5G44582 unknown -3.573 -2.340
30 AT4G02330 AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -3.380 -1.431
31 AT4G24972 AT4G24972 TPD1, TAPETUM DETERMINANT 1 -3.322 -0.017
32 AT2G20835 AT2G20835 unknown -3.314 -0.298
33 AT5G40590 AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] -3.195 -0.386
34 AT1G53130 AT1G53130 GRI, GRIM REAPER -3.161 -0.311
35 AT5G24110 AT5G24110 ATWRKY30, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY30, WRKY DNA-binding protein 30 -3.042 1.388
36 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -2.993 -3.215
37 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.984 -3.063
38 AT1G76220 AT1G76220 unknown -2.979 -1.191
39 AT5G62210 AT5G62210 [Embryo-specific protein 3, (ATS3)] -2.856 -3.413
40 AT1G01470 AT1G01470 LEA14, LATE EMBRYOGENESIS ABUNDANT 14, LSR3, LIGHT STRESS-REGULATED 3 -2.659 0.053
41 AT1G70880 AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -2.615 -0.393