4.0:Information of module
root cap pGL2(QC pSCRBRI1) 8h BL
In comparison with lateral root cap-columella pBRN2 3h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006820 anion transport BP 8.691e-31
GO:0015698 inorganic anion transport BP 1.213e-28
GO:0071705 nitrogen compound transport BP 5.409e-28
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 3.854e-24
GO:0050896 response to stimulus BP 8.363e-22
GO:1901700 response to oxygen-containing compound BP 1.962e-20
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root cap pGL2(QC pSCRBRI1) 8h BL		 Log2 signal ratio
lateral root cap-columella pBRN2 3h BL
1 AT4G27160 AT4G27160 AT2S3, SESA3, seed storage albumin 3 5.592 0.035
2 AT1G44010 AT1G44010 unknown 4.487 0.979
3 AT4G37780 AT4G37780 ATMYB87, MYB87, myb domain protein 87 4.238 1.258
4 AT3G45060 AT3G45060 ATNRT2.6, ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, NRT2.6, high affinity nitrate transporter 2.6 4.202 0.035
5 AT2G04070 AT2G04070 [MATE efflux family protein] 4.006 0.035
6 AT2G37810 AT2G37810 [Cysteine/Histidine-rich C1 domain family protein] 3.962 0.566
7 AT4G03480 AT4G03480 [Ankyrin repeat family protein] 3.891 0.935
8 AT2G37800 AT2G37800 [Cysteine/Histidine-rich C1 domain family protein] 3.778 0.953
9 AT4G18195 AT4G18195 ATPUP8, ARABIDOPSIS THALIANA PURINE PERMEASE 8, PUP8, purine permease 8 3.610 0.035
10 AT5G39100 AT5G39100 GLP6, germin-like protein 6 3.583 2.077
11 AT4G14365 AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 3.496 -0.192
12 AT3G22231 AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 3.321 -0.353
13 AT1G48990 AT1G48990 [Oleosin family protein] 3.311 -0.495
14 AT5G05390 AT5G05390 LAC12, laccase 12 3.252 -0.936
15 AT1G70260 AT1G70260 UMAMIT36, Usually multiple acids move in and out Transporters 36 3.204 -2.105
16 AT3G51200 AT3G51200 SAUR18, SMALL AUXIN UPREGULATED RNA 18 3.145 0.035
17 AT5G36920 AT5G36920 unknown 3.126 -0.496
18 AT5G43290 AT5G43290 ATWRKY49, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY49, WRKY DNA-binding protein 49 3.126 0.035
19 AT1G33840 AT1G33840 unknown 3.062 2.067
20 AT1G19250 AT1G19250 FMO1, flavin-dependent monooxygenase 1 2.889 1.753
21 AT5G36925 AT5G36925 unknown 2.859 -0.520
22 AT5G48430 AT5G48430 [Eukaryotic aspartyl protease family protein] 2.726 1.430
23 AT1G49860 AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 2.720 0.079
24 AT1G51913 AT1G51913 [LOCATED IN: endomembrane system] 2.658 1.125
25 AT1G26420 AT1G26420 [FAD-binding Berberine family protein] 2.655 1.620
26 AT3G55700 AT3G55700 [UDP-Glycosyltransferase superfamily protein] 2.590 0.686
27 AT1G21320 AT1G21320 [nucleotide binding] 2.585 0.442
28 AT3G20380 AT3G20380 [TRAF-like family protein] 2.584 1.130
29 AT5G44568 AT5G44568 unknown 2.537 -1.053
30 AT2G41100 AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 2.513 -0.141
31 AT4G18940 AT4G18940 [RNA ligase/cyclic nucleotide phosphodiesterase family protein] 2.502 1.523
32 AT4G01970 AT4G01970 AtSTS, stachyose synthase, RS4, raffinose synthase 4, STS, stachyose synthase 2.498 0.993
33 AT5G37490 AT5G37490 [ARM repeat superfamily protein] 2.476 1.030
34 AT2G45360 AT2G45360 unknown 2.446 1.138
35 AT4G12490 AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 2.412 -0.360
36 AT3G01175 AT3G01175 unknown 2.400 1.674
37 AT1G26210 AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 2.367 1.776
38 AT4G14630 AT4G14630 GLP9, germin-like protein 9 2.332 0.592
39 AT1G49000 AT1G49000 unknown 2.296 0.189
40 AT1G36640 AT1G36640 unknown 2.276 0.620
41 AT3G50470 AT3G50470 HR3, homolog of RPW8 3, MLA10, INTRACELLULAR MILDEW A 10 2.267 0.796
42 AT1G65484 AT1G65484 unknown 2.228 1.079
43 AT5G52710 AT5G52710 [Copper transport protein family] 2.206 -0.831
44 AT3G51220 AT3G51220 unknown 2.196 0.300
45 AT3G27095 AT3G27095 [pseudogene] 2.194 1.047
46 AT1G22890 AT1G22890 unknown 2.188 2.696
47 AT2G31540 AT2G31540 [GDSL-like Lipase/Acylhydrolase superfamily protein] 2.179 1.102
48 AT1G09932 AT1G09932 [Phosphoglycerate mutase family protein] 2.174 -0.373
49 AT3G62690 AT3G62690 ATL5, AtL5 2.149 0.561
50 AT1G29860 AT1G29860 ATWRKY71, WRKY DNA-BINDING PROTEIN 71, WRKY71, WRKY DNA-binding protein 71 2.148 0.566
51 AT5G42325 AT5G42325 [Transcription factor IIS protein] 2.123 -1.492
52 AT2G18650 AT2G18650 MEE16, maternal effect embryo arrest 16 2.111 -0.332
53 AT5G19890 AT5G19890 [Peroxidase superfamily protein] 2.082 0.431
54 AT4G04700 AT4G04700 CPK27, calcium-dependent protein kinase 27 2.065 0.549
55 AT4G14450 AT4G14450 unknown 2.048 -1.625
56 AT5G41300 AT5G41300 [Receptor-like protein kinase-related family protein] 2.045 0.584
57 AT1G21130 AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 2.044 0.883
58 AT3G50770 AT3G50770 CML41, calmodulin-like 41 2.020 0.145
59 AT2G39200 AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 2.018 -0.243
60 AT3G13610 AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 2.009 0.298
61 AT4G26260 AT4G26260 MIOX4, myo-inositol oxygenase 4 1.988 0.951
62 AT1G30040 AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 1.974 1.749
63 AT1G65486 AT1G65486 unknown 1.963 1.653
64 AT3G50460 AT3G50460 HR2, homolog of RPW8 2 1.921 1.463
65 AT5G59930 AT5G59930 [Cysteine/Histidine-rich C1 domain family protein] 1.894 0.189
66 AT1G52342 AT1G52342 unknown -3.529 -0.399
67 ATCG00130 ATCG00130 ATPF -3.482 0.246
68 AT4G22217 AT4G22217 [Arabidopsis defensin-like protein] -3.429 -0.714
69 AT1G33100 AT1G33100 [MATE efflux family protein] -3.193 -1.483
70 AT3G25655 AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 -2.799 -1.640
71 AT5G59080 AT5G59080 unknown -2.754 0.850
72 AT4G15233 AT4G15233 ABCG42, ATP-binding cassette G42 -2.695 -0.466
73 AT1G26762 AT1G26762 unknown -2.593 0.035
74 AT1G33090 AT1G33090 [MATE efflux family protein] -2.578 -1.604
75 ATMG00690 ATMG00690 ORF240A -2.343 0.650
76 AT5G62210 AT5G62210 [Embryo-specific protein 3, (ATS3)] -2.337 -1.121
77 AT2G25150 AT2G25150 [HXXXD-type acyl-transferase family protein] -2.267 0.593
78 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -2.259 -1.660
79 ATCG00510 ATCG00510 PSAI, photsystem I subunit I -2.214 0.310
80 AT2G07708 AT2G07708 unknown -2.053 -0.048
81 AT5G48010 AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 -2.042 -0.984
82 AT2G01021 AT2G01021 unknown -2.031 -0.522
83 AT3G49580 AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -2.014 -0.769
84 AT5G59760 AT5G59760 unknown -1.993 -0.016
85 AT2G34925 AT2G34925 CLE42, CLAVATA3/ESR-RELATED 42 -1.928 0.178
86 AT5G13080 AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 -1.900 -0.326
87 AT2G07719 AT2G07719 [Putative membrane lipoprotein] -1.894 -0.039
88 AT5G12270 AT5G12270 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.891 -0.550
89 AT5G66170 AT5G66170 STR18, sulfurtransferase 18 -1.889 0.249
90 AT1G70880 AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.867 -0.562
91 AT1G58170 AT1G58170 [Disease resistance-responsive (dirigent-like protein) family protein] -1.832 0.390
92 ATCG00040 ATCG00040 MATK, maturase K -1.818 -0.429
93 AT4G11190 AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -1.809 -0.768
94 AT5G65300 AT5G65300 unknown -1.808 -0.700
95 AT2G22770 AT2G22770 NAI1 -1.802 -0.253
96 AT4G37620 AT4G37620 [similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09490.1)] -1.799 -0.428
97 AT1G19050 AT1G19050 ARR7, response regulator 7 -1.791 0.111
98 ATCG00360 ATCG00360 YCF3 -1.762 -0.020
99 AT5G48000 AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 -1.753 -0.341
100 AT2G17070 AT2G17070 unknown -1.749 -1.045
101 AT1G21520 AT1G21520 unknown -1.734 -0.008
102 AT3G62760 AT3G62760 ATGSTF13 -1.727 -2.761
103 AT1G64950 AT1G64950 CYP89A5, cytochrome P450, family 89, subfamily A, polypeptide 5 -1.711 -1.261
104 AT3G49570 AT3G49570 LSU3, RESPONSE TO LOW SULFUR 3 -1.701 -1.072
105 AT1G26770 AT1G26770 AT-EXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXPA10, expansin A10, ATHEXP ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, EXP10, EXPANSIN 10, EXPA10, expansin A10 -1.675 0.429
106 AT1G70885 AT1G70885 [pseudogene] -1.653 -0.075
107 AT1G68620 AT1G68620 [alpha/beta-Hydrolases superfamily protein] -1.643 0.563
108 AT4G01670 AT4G01670 unknown -1.641 -0.928
109 AT5G47990 AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -1.638 -0.066
110 AT4G30270 AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -1.622 -0.563
111 AT2G31980 AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -1.612 0.056
112 AT3G15030 AT3G15030 MEE35, maternal effect embryo arrest 35, TCP4, TCP family transcription factor 4 -1.610 -0.108
113 AT1G72490 AT1G72490 unknown -1.590 0.217
114 AT5G23820 AT5G23820 ML3, MD2-related lipid recognition 3 -1.561 -0.222
115 AT5G57010 AT5G57010 [calmodulin-binding family protein] -1.555 -1.792
116 AT2G25450 AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.527 -0.664
117 AT1G75450 AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 -1.527 -0.162
118 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -1.523 -2.202
119 AT2G41312 AT2G41312 other RNA -1.517 -0.751
120 AT5G38020 AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -1.510 -2.084
121 AT5G26290 AT5G26290 [TRAF-like family protein] -1.507 -0.875
122 AT1G14960 AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.471 -0.685
123 ATMG00090 ATMG00090 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -1.461 0.328
124 ATCG00790 ATCG00790 RPL16, ribosomal protein L16 -1.454 -0.020
125 AT3G30180 AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -1.436 -2.131
126 AT2G39310 AT2G39310 JAL22, jacalin-related lectin 22 -1.417 -0.536
127 AT3G45680 AT3G45680 [Major facilitator superfamily protein] -1.412 0.067
128 AT1G10370 AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 -1.400 -0.157
129 AT1G62975 AT1G62975 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -1.385 0.881