4.0:Information of module
root cap pGL2(QC pSCRBRI1) 8h BL
In comparison with stele pSHR 8h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006820 anion transport BP 8.691e-31
GO:0015698 inorganic anion transport BP 1.213e-28
GO:0071705 nitrogen compound transport BP 5.409e-28
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 3.854e-24
GO:0050896 response to stimulus BP 8.363e-22
GO:1901700 response to oxygen-containing compound BP 1.962e-20
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root cap pGL2(QC pSCRBRI1) 8h BL		 Log2 signal ratio
stele pSHR 8h BL
1 AT4G27160 AT4G27160 AT2S3, SESA3, seed storage albumin 3 5.592 -0.170
2 AT1G44010 AT1G44010 unknown 4.487 1.861
3 AT4G37780 AT4G37780 ATMYB87, MYB87, myb domain protein 87 4.238 1.295
4 AT3G45060 AT3G45060 ATNRT2.6, ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, NRT2.6, high affinity nitrate transporter 2.6 4.202 -0.170
5 AT2G04070 AT2G04070 [MATE efflux family protein] 4.006 0.742
6 AT2G37810 AT2G37810 [Cysteine/Histidine-rich C1 domain family protein] 3.962 -0.170
7 AT4G03480 AT4G03480 [Ankyrin repeat family protein] 3.891 0.034
8 AT2G37800 AT2G37800 [Cysteine/Histidine-rich C1 domain family protein] 3.778 -0.170
9 AT4G18195 AT4G18195 ATPUP8, ARABIDOPSIS THALIANA PURINE PERMEASE 8, PUP8, purine permease 8 3.610 -0.170
10 AT5G39100 AT5G39100 GLP6, germin-like protein 6 3.583 -1.092
11 AT4G14365 AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 3.496 0.097
12 AT3G22231 AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 3.321 1.722
13 AT1G48990 AT1G48990 [Oleosin family protein] 3.311 -0.583
14 AT5G05390 AT5G05390 LAC12, laccase 12 3.252 0.171
15 AT1G70260 AT1G70260 UMAMIT36, Usually multiple acids move in and out Transporters 36 3.204 1.851
16 AT3G51200 AT3G51200 SAUR18, SMALL AUXIN UPREGULATED RNA 18 3.145 -0.170
17 AT5G36920 AT5G36920 unknown 3.126 -0.170
18 AT5G43290 AT5G43290 ATWRKY49, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY49, WRKY DNA-binding protein 49 3.126 -0.170
19 AT1G33840 AT1G33840 unknown 3.062 1.046
20 AT1G19250 AT1G19250 FMO1, flavin-dependent monooxygenase 1 2.889 0.162
21 AT5G36925 AT5G36925 unknown 2.859 -1.138
22 AT5G48430 AT5G48430 [Eukaryotic aspartyl protease family protein] 2.726 0.809
23 AT1G49860 AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 2.720 1.444
24 AT1G51913 AT1G51913 [LOCATED IN: endomembrane system] 2.658 1.046
25 AT1G26420 AT1G26420 [FAD-binding Berberine family protein] 2.655 -0.631
26 AT3G55700 AT3G55700 [UDP-Glycosyltransferase superfamily protein] 2.590 1.549
27 AT1G21320 AT1G21320 [nucleotide binding] 2.585 -0.170
28 AT3G20380 AT3G20380 [TRAF-like family protein] 2.584 0.622
29 AT5G44568 AT5G44568 unknown 2.537 1.232
30 AT2G41100 AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 2.513 1.963
31 AT4G18940 AT4G18940 [RNA ligase/cyclic nucleotide phosphodiesterase family protein] 2.502 1.510
32 AT4G01970 AT4G01970 AtSTS, stachyose synthase, RS4, raffinose synthase 4, STS, stachyose synthase 2.498 0.702
33 AT5G37490 AT5G37490 [ARM repeat superfamily protein] 2.476 1.217
34 AT2G45360 AT2G45360 unknown 2.446 1.010
35 AT4G12490 AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 2.412 0.357
36 AT3G01175 AT3G01175 unknown 2.400 0.595
37 AT1G26210 AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 2.367 1.214
38 AT4G14630 AT4G14630 GLP9, germin-like protein 9 2.332 1.292
39 AT1G49000 AT1G49000 unknown 2.296 0.128
40 AT1G36640 AT1G36640 unknown 2.276 0.374
41 AT3G50470 AT3G50470 HR3, homolog of RPW8 3, MLA10, INTRACELLULAR MILDEW A 10 2.267 1.295
42 AT1G65484 AT1G65484 unknown 2.228 1.509
43 AT5G52710 AT5G52710 [Copper transport protein family] 2.206 1.725
44 AT3G51220 AT3G51220 unknown 2.196 0.382
45 AT3G27095 AT3G27095 [pseudogene] 2.194 0.125
46 AT1G22890 AT1G22890 unknown 2.188 0.919
47 AT2G31540 AT2G31540 [GDSL-like Lipase/Acylhydrolase superfamily protein] 2.179 0.954
48 AT1G09932 AT1G09932 [Phosphoglycerate mutase family protein] 2.174 1.439
49 AT3G62690 AT3G62690 ATL5, AtL5 2.149 0.049
50 AT1G29860 AT1G29860 ATWRKY71, WRKY DNA-BINDING PROTEIN 71, WRKY71, WRKY DNA-binding protein 71 2.148 1.549
51 AT5G42325 AT5G42325 [Transcription factor IIS protein] 2.123 0.364
52 AT2G18650 AT2G18650 MEE16, maternal effect embryo arrest 16 2.111 0.227
53 AT5G19890 AT5G19890 [Peroxidase superfamily protein] 2.082 0.907
54 AT4G04700 AT4G04700 CPK27, calcium-dependent protein kinase 27 2.065 0.362
55 AT4G14450 AT4G14450 unknown 2.048 0.286
56 AT5G41300 AT5G41300 [Receptor-like protein kinase-related family protein] 2.045 0.851
57 AT1G21130 AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 2.044 0.559
58 AT3G50770 AT3G50770 CML41, calmodulin-like 41 2.020 0.109
59 AT2G39200 AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 2.018 0.242
60 AT3G13610 AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 2.009 0.528
61 AT4G26260 AT4G26260 MIOX4, myo-inositol oxygenase 4 1.988 1.877
62 AT1G30040 AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 1.974 0.131
63 AT1G65486 AT1G65486 unknown 1.963 1.364
64 AT3G50460 AT3G50460 HR2, homolog of RPW8 2 1.921 1.040
65 AT5G59930 AT5G59930 [Cysteine/Histidine-rich C1 domain family protein] 1.894 -0.067
66 AT1G52342 AT1G52342 unknown -3.529 -0.215
67 ATCG00130 ATCG00130 ATPF -3.482 0.246
68 AT4G22217 AT4G22217 [Arabidopsis defensin-like protein] -3.429 -1.137
69 AT1G33100 AT1G33100 [MATE efflux family protein] -3.193 -0.170
70 AT3G25655 AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 -2.799 -1.517
71 AT5G59080 AT5G59080 unknown -2.754 -0.110
72 AT4G15233 AT4G15233 ABCG42, ATP-binding cassette G42 -2.695 0.039
73 AT1G26762 AT1G26762 unknown -2.593 -0.170
74 AT1G33090 AT1G33090 [MATE efflux family protein] -2.578 0.085
75 ATMG00690 ATMG00690 ORF240A -2.343 -0.436
76 AT5G62210 AT5G62210 [Embryo-specific protein 3, (ATS3)] -2.337 -2.952
77 AT2G25150 AT2G25150 [HXXXD-type acyl-transferase family protein] -2.267 -0.694
78 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -2.259 -0.396
79 ATCG00510 ATCG00510 PSAI, photsystem I subunit I -2.214 0.351
80 AT2G07708 AT2G07708 unknown -2.053 0.052
81 AT5G48010 AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 -2.042 -0.617
82 AT2G01021 AT2G01021 unknown -2.031 0.996
83 AT3G49580 AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -2.014 -0.501
84 AT5G59760 AT5G59760 unknown -1.993 -0.277
85 AT2G34925 AT2G34925 CLE42, CLAVATA3/ESR-RELATED 42 -1.928 -0.057
86 AT5G13080 AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 -1.900 0.664
87 AT2G07719 AT2G07719 [Putative membrane lipoprotein] -1.894 -0.226
88 AT5G12270 AT5G12270 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.891 -0.229
89 AT5G66170 AT5G66170 STR18, sulfurtransferase 18 -1.889 -0.664
90 AT1G70880 AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.867 -1.433
91 AT1G58170 AT1G58170 [Disease resistance-responsive (dirigent-like protein) family protein] -1.832 -0.570
92 ATCG00040 ATCG00040 MATK, maturase K -1.818 -0.167
93 AT4G11190 AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -1.809 -1.322
94 AT5G65300 AT5G65300 unknown -1.808 -0.379
95 AT2G22770 AT2G22770 NAI1 -1.802 -0.588
96 AT4G37620 AT4G37620 [similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09490.1)] -1.799 -0.399
97 AT1G19050 AT1G19050 ARR7, response regulator 7 -1.791 -0.192
98 ATCG00360 ATCG00360 YCF3 -1.762 0.621
99 AT5G48000 AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 -1.753 -0.867
100 AT2G17070 AT2G17070 unknown -1.749 -1.091
101 AT1G21520 AT1G21520 unknown -1.734 0.199
102 AT3G62760 AT3G62760 ATGSTF13 -1.727 -3.354
103 AT1G64950 AT1G64950 CYP89A5, cytochrome P450, family 89, subfamily A, polypeptide 5 -1.711 -0.476
104 AT3G49570 AT3G49570 LSU3, RESPONSE TO LOW SULFUR 3 -1.701 -0.513
105 AT1G26770 AT1G26770 AT-EXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXPA10, expansin A10, ATHEXP ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, EXP10, EXPANSIN 10, EXPA10, expansin A10 -1.675 0.115
106 AT1G70885 AT1G70885 [pseudogene] -1.653 -0.557
107 AT1G68620 AT1G68620 [alpha/beta-Hydrolases superfamily protein] -1.643 -0.029
108 AT4G01670 AT4G01670 unknown -1.641 0.270
109 AT5G47990 AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -1.638 -0.886
110 AT4G30270 AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -1.622 0.171
111 AT2G31980 AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -1.612 0.257
112 AT3G15030 AT3G15030 MEE35, maternal effect embryo arrest 35, TCP4, TCP family transcription factor 4 -1.610 -0.389
113 AT1G72490 AT1G72490 unknown -1.590 -0.912
114 AT5G23820 AT5G23820 ML3, MD2-related lipid recognition 3 -1.561 -0.595
115 AT5G57010 AT5G57010 [calmodulin-binding family protein] -1.555 -0.366
116 AT2G25450 AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.527 -0.218
117 AT1G75450 AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 -1.527 0.105
118 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -1.523 -3.687
119 AT2G41312 AT2G41312 other RNA -1.517 -0.622
120 AT5G38020 AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -1.510 -1.513
121 AT5G26290 AT5G26290 [TRAF-like family protein] -1.507 -0.734
122 AT1G14960 AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.471 -0.275
123 ATMG00090 ATMG00090 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -1.461 0.323
124 ATCG00790 ATCG00790 RPL16, ribosomal protein L16 -1.454 0.561
125 AT3G30180 AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -1.436 -1.272
126 AT2G39310 AT2G39310 JAL22, jacalin-related lectin 22 -1.417 0.301
127 AT3G45680 AT3G45680 [Major facilitator superfamily protein] -1.412 -0.306
128 AT1G10370 AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 -1.400 -0.170
129 AT1G62975 AT1G62975 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -1.385 -0.248