4.0:Information of module
mkk1 24h BTH rep
In comparison with Shoot dark control 7h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0005996 monosaccharide metabolic process BP 2.623e-10
GO:0005975 carbohydrate metabolic process BP 3.901e-09
GO:0019318 hexose metabolic process BP 1.083e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006352 DNA-templated transcription, initiation BP 4.370e-05
GO:0007005 mitochondrion organization BP 5.859e-05
GO:0006626 protein targeting to mitochondrion BP 5.936e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
mkk1 24h BTH rep		 Log2 signal ratio
Shoot dark control 7h
1 244966_at ATCG00600 PETG 0.534 0.017
2 244903_at ATMG00660 ORF149 0.417 0.249
3 261395_at AT1G79700 WRI4, WRINKLED 4 0.338 0.937
4 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 0.331 0.665
5 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.325 0.445
6 250446_at AT5G10770 [Eukaryotic aspartyl protease family protein] 0.317 -0.290
7 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.309 0.809
8 267094_at AT2G38080 ATLMCO4, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, IRX12, IRREGULAR XYLEM 12, LAC4, LACCASE 4, LMCO4, LACCASE-LIKE MULTICOPPER OXIDASE 4 0.303 -0.256
9 250580_at AT5G07440 GDH2, glutamate dehydrogenase 2 0.284 0.651
10 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 0.282 1.168
11 248037_at AT5G55930 ATOPT1, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, OPT1, oligopeptide transporter 1 0.280 0.134
12 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 0.274 0.614
13 264788_at AT2G17880 DJC24, DNA J protein C24 0.271 0.888
14 259166_at AT3G01670 AtSEOR2, Arabidopsis thaliana sieve element occlusion-related 2, SEOa, sieve element occlusion a, SEOR2, sieve element occlusion-related 2 0.270 0.034
15 264197_at AT1G22620 ATSAC1, suppressor of actin 1 0.265 0.201
16 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.264 1.193
17 251494_at AT3G59350 [Protein kinase superfamily protein] 0.260 0.814
18 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 0.255 0.402
19 252387_at AT3G47800 [Galactose mutarotase-like superfamily protein] 0.246 0.487
20 250958_at AT5G03260 LAC11, laccase 11 0.244 -0.437
21 259982_at AT1G76410 ATL8 0.243 0.886
22 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 0.238 0.170
23 255417_at AT4G03190 AFB1, AUXIN SIGNALING F BOX PROTEIN 1, ATGRH1, GRH1, GRR1-like protein 1 0.238 0.388
24 253908_at AT4G27260 GH3.5, WES1 0.235 0.824
25 252456_at AT3G47170 [HXXXD-type acyl-transferase family protein] 0.234 0.025
26 250134_at AT5G16505 MUG4, MUSTANG 4 0.234 0.223
27 262797_at AT1G20840 AtTMT1, TMT1, tonoplast monosaccharide transporter1 0.231 0.391
28 258100_at AT3G23550 [MATE efflux family protein] 0.229 0.235
29 260556_at AT2G43620 [Chitinase family protein] 0.228 0.923
30 255568_at AT4G01250 AtWRKY22, WRKY22 0.224 0.733
31 262324_at AT1G64170 ATCHX16, cation/H+ exchanger 16, CHX16, cation/H+ exchanger 16 0.224 -0.016
32 264493_at AT1G27440 ATGUT1, GUT2, IRX10 0.221 -0.058
33 256429_at AT3G11040 AtENGase85B, ENGase85B, Endo-beta-N-acetyglucosaminidase 85B 0.211 0.187
34 254246_at AT4G23250 CRK17, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 17, DUF26-21, EMB1290, EMBRYO DEFECTIVE 1290, RKC1, RECEPTOR-LIKE KINASE THALIANACOL-0GENOMICLIBRARY(CLONTECH).THEPOSITIVEPHAGECLONES C-X8-C-X2-C CLASS 1 0.210 0.009
35 245792_at AT1G32100 ATPRR1, PRR1, pinoresinol reductase 1 0.210 -0.468
36 253524_at AT4G31430 unknown 0.208 0.299
37 253402_at AT4G32880 ATHB-8, homeobox gene 8, ATHB8, HB-8, homeobox gene 8 0.207 0.011
38 260282_at AT1G80410 EMB2753, EMBRYO DEFECTIVE 2753, OMA, OMISHA 0.206 0.068
39 262297_at AT1G27600 I9H, IRREGULAR XYLEM 9 Homolog, IRX9-L, IRREGULAR XYLEM 9-LIKE 0.202 0.216
40 258556_at AT3G07020 SGT, sterol glucosyltransferase, UGT80A2, UDP-glucosyl transferase 80A2 0.202 0.162
41 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 0.199 -0.164
42 249345_at AT5G40740 AUG6, augmin subunit 6 0.199 0.451
43 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 0.196 1.381
44 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 0.196 -0.296
45 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.195 0.590
46 250777_at AT5G05440 PYL5, PYRABACTIN RESISTANCE 1-LIKE 5, RCAR8, regulatory component of ABA receptor 8 0.191 0.368
47 250657_at AT5G07000 ATST2B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, ST2B, sulfotransferase 2B 0.191 0.144
48 250664_at AT5G07080 [HXXXD-type acyl-transferase family protein] 0.189 -0.003
49 254091_at AT4G25070 unknown 0.185 0.052
50 266783_at AT2G29130 ATLAC2, LAC2, laccase 2 0.184 0.017
51 260728_at AT1G48210 [Protein kinase superfamily protein] 0.183 0.401
52 259398_at AT1G17700 PRA1.F1, prenylated RAB acceptor 1.F1 0.181 0.170
53 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.180 0.020
54 262686_at AT1G75990 [PAM domain (PCI/PINT associated module) protein] 0.179 0.016
55 266860_at AT2G26870 NPC2, non-specific phospholipase C2 0.178 -0.104
56 259182_at AT3G01750 [Ankyrin repeat family protein] 0.177 0.261
57 258366_at AT3G14230 RAP2.2, related to AP2 2 0.177 0.113
58 258382_at AT3G15355 PFU1, PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, UBC25, ubiquitin-conjugating enzyme 25 0.175 0.394
59 266984_at AT2G39570 ACR9, ACT domain repeats 9 0.175 0.463
60 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 0.175 0.764
61 246511_at AT5G15490 UGD3, UDP-glucose dehydrogenase 3 0.174 -0.193
62 252121_at AT3G51160 GMD2, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, MUR1, MURUS 1, MUR_1, MURUS 1 0.173 -0.115
63 266140_at AT2G28120 [Major facilitator superfamily protein] 0.172 0.638
64 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 0.171 -0.023
65 245362_at AT4G17460 HAT1, JAB, JAIBA 0.169 0.433
66 252022_at AT3G52930 AtFBA8, FBA8, fructose-bisphosphate aldolase 8 0.168 -0.029
67 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.165 0.581
68 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 0.165 0.925
69 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor 0.164 -0.004
70 245697_at AT5G04200 AtMC9, metacaspase 9, AtMCP2f, metacaspase 2f, MC9, metacaspase 9, MCP2f, metacaspase 2f 0.163 -0.231
71 252939_at AT4G39230 [NmrA-like negative transcriptional regulator family protein] 0.163 0.032
72 266995_at AT2G34500 CYP710A1, cytochrome P450, family 710, subfamily A, polypeptide 1 0.161 0.260
73 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 0.159 -0.247
74 251534_at AT3G58510 [DEA(D/H)-box RNA helicase family protein] 0.158 -0.112
75 251069_at AT5G01930 AtMAN6, MAN6, endo-beta-mannase 6 0.157 -0.118
76 258416_at AT3G17310 AtDRM3, DRM3, domains rearranged methyltransferase 3 0.156 0.040
77 262885_at AT1G64740 TUA1, alpha-1 tubulin 0.156 0.115
78 247145_at AT5G65600 LecRK-IX.2, L-type lectin receptor kinase IX.2 0.154 0.007
79 255258_at AT4G05060 [PapD-like superfamily protein] 0.154 0.405
80 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 0.152 0.394
81 264013_at AT2G21070 FIO1, FIONA1 0.151 0.251
82 250738_at AT5G05730 AMT1, A-METHYL TRYPTOPHAN RESISTANT 1, ASA1, anthranilate synthase alpha subunit 1, JDL1, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, TRP5, TRYPTOPHAN BIOSYNTHESIS 5, WEI2, WEAK ETHYLENE INSENSITIVE 2 0.150 -0.128
83 252994_at AT4G38480 [Transducin/WD40 repeat-like superfamily protein] 0.147 0.114
84 266372_at AT2G41310 ARR8, RESPONSE REGULATOR 8, ATRR3, response regulator 3, RR3, response regulator 3 -0.499 -0.439
85 258349_at AT3G17609 HYH, HY5-homolog -0.468 -1.144
86 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.461 -0.188
87 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.425 0.245
88 248471_at AT5G50840 unknown -0.420 0.036
89 253993_at AT4G26070 ATMEK1, MEK1, MAP kinase/ ERK kinase 1, MKK1, MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, NMAPKK -0.409 0.240
90 245426_at AT4G17540 unknown -0.394 -0.173
91 248378_at AT5G51840 unknown -0.381 -0.047
92 247942_at AT5G57120 unknown -0.378 -0.050
93 259415_at AT1G02330 unknown -0.377 0.164
94 248246_at AT5G53200 TRY, TRIPTYCHON -0.371 -0.798
95 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.370 -0.732
96 245743_at AT1G51080 unknown -0.370 -0.585
97 262871_at AT1G65010 [INVOLVED IN: flower development] -0.367 -0.212
98 256379_at AT1G66840 PMI2, plastid movement impaired 2, WEB2, WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2 -0.359 -0.682
99 248869_at AT5G46840 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.358 0.331
100 249886_at AT5G22320 [Leucine-rich repeat (LRR) family protein] -0.354 -0.179
101 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.350 0.082
102 261407_at AT1G18810 [phytochrome kinase substrate-related] -0.342 -0.301
103 262137_at AT1G77920 TGA7, TGACG sequence-specific binding protein 7 -0.338 -0.230
104 266310_at AT2G26990 ATCSN2, COP12, CONSTITUTIVE PHOTOMORPHOGENIC 12, CSN2, FUS12, FUSCA 12 -0.338 0.148
105 252938_at AT4G39190 unknown -0.335 -0.312
106 248867_at AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -0.328 -0.898
107 252346_at AT3G48650 [pseudogene] -0.326 -0.116
108 263412_at AT2G28720 [Histone superfamily protein] -0.318 0.203
109 266384_at AT2G14660 unknown -0.313 -0.714
110 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 -0.307 -0.224
111 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 -0.301 -0.015
112 255579_at AT4G01460 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.299 -0.070
113 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.292 -0.874
114 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 -0.292 -0.520
115 266537_at AT2G16860 [GCIP-interacting family protein] -0.287 0.041
116 254145_at AT4G24700 unknown -0.283 -0.837
117 263039_at AT1G23280 [MAK16 protein-related] -0.281 -0.167
118 249811_at AT5G23760 [Copper transport protein family] -0.281 -0.095
119 249528_at AT5G38720 unknown -0.277 -0.228
120 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.275 0.362
121 264094_at AT1G79200 SCI1, stigma/style cell-cycle inhibitor 1 -0.270 0.028
122 258935_at AT3G10120 unknown -0.266 0.215
123 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] -0.266 0.124
124 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 -0.265 -0.810
125 247293_at AT5G64510 TIN1, tunicamycin induced 1 -0.260 -0.151
126 255438_at AT4G03070 AOP, AOP1, AOP1.1 -0.260 -0.637
127 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.260 -0.546
128 251887_at AT3G54170 ATFIP37, FKBP12 interacting protein 37, FIP37, FKBP12 interacting protein 37 -0.259 0.089
129 263545_at AT2G21560 unknown -0.258 -0.325
130 260981_at AT1G53460 unknown -0.258 0.128
131 247977_at AT5G56850 unknown -0.257 -0.904
132 248936_at AT5G45710 AT-HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, RHA1, ROOT HANDEDNESS 1 -0.252 0.154
133 249404_at AT5G40160 EMB139, EMBRYO DEFECTIVE 139, EMB506, embryo defective 506 -0.250 -0.267
134 245588_at AT4G15030 unknown -0.247 0.168
135 258260_at AT3G26850 [histone-lysine N-methyltransferases] -0.247 -0.154
136 254427_at AT4G21190 emb1417, embryo defective 1417 -0.246 -0.090
137 258084_at AT3G26020 [Protein phosphatase 2A regulatory B subunit family protein] -0.245 0.027
138 251600_at AT3G57710 [Protein kinase superfamily protein] -0.243 0.150
139 266049_at AT2G40780 [Nucleic acid-binding, OB-fold-like protein] -0.238 -0.057
140 258744_at AT3G05830 unknown -0.236 -0.130
141 256910_at AT3G24080 [KRR1 family protein] -0.236 -0.145
142 250543_at AT5G08190 NF-YB12, nuclear factor Y, subunit B12 -0.236 0.154
143 248251_at AT5G53220 unknown -0.234 0.269
144 252319_at AT3G48710 [DEK domain-containing chromatin associated protein] -0.233 0.146
145 261207_at AT1G12830 unknown -0.233 -0.108
146 262984_at AT1G54460 [TPX2 (targeting protein for Xklp2) protein family] -0.231 0.104
147 250728_at AT5G06440 unknown -0.230 0.157
148 257285_at AT3G29760 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.224 -0.180
149 266480_at AT2G31130 unknown -0.224 0.249
150 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] -0.223 -0.340
151 256529_at AT1G33260 [Protein kinase superfamily protein] -0.222 -0.597
152 249863_at AT5G22950 VPS24.1 -0.222 0.007
153 266776_at AT2G29070 [Ubiquitin fusion degradation UFD1 family protein] -0.221 0.150
154 265909_at AT2G25720 unknown -0.220 -0.029
155 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 -0.218 0.246
156 259207_at AT3G09050 unknown -0.218 -0.443
157 246487_at AT5G16030 unknown -0.216 0.212
158 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 -0.216 -0.141
159 258017_at AT3G19370 unknown -0.215 -0.487
160 260009_at AT1G67950 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.215 -0.314
161 250380_at AT5G11600 unknown -0.212 0.477
162 255449_at AT4G02820 [Pentatricopeptide repeat (PPR) superfamily protein] -0.211 -0.106
163 263690_at AT1G26960 AtHB23, homeobox protein 23, HB23, homeobox protein 23 -0.210 0.052
164 261138_at AT1G19710 [UDP-Glycosyltransferase superfamily protein] -0.209 -0.008
165 254955_at AT4G10920 KELP -0.208 0.116