4.0:Information of module
mkk1 24h BTH rep
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0005996 monosaccharide metabolic process BP 2.623e-10
GO:0005975 carbohydrate metabolic process BP 3.901e-09
GO:0019318 hexose metabolic process BP 1.083e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006352 DNA-templated transcription, initiation BP 4.370e-05
GO:0007005 mitochondrion organization BP 5.859e-05
GO:0006626 protein targeting to mitochondrion BP 5.936e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
mkk1 24h BTH rep		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 244966_at ATCG00600 PETG 0.534 -0.656
2 244903_at ATMG00660 ORF149 0.417 0.112
3 261395_at AT1G79700 WRI4, WRINKLED 4 0.338 -0.971
4 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 0.331 0.445
5 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.325 0.951
6 250446_at AT5G10770 [Eukaryotic aspartyl protease family protein] 0.317 0.041
7 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.309 -0.635
8 267094_at AT2G38080 ATLMCO4, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, IRX12, IRREGULAR XYLEM 12, LAC4, LACCASE 4, LMCO4, LACCASE-LIKE MULTICOPPER OXIDASE 4 0.303 -0.269
9 250580_at AT5G07440 GDH2, glutamate dehydrogenase 2 0.284 0.561
10 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 0.282 0.492
11 248037_at AT5G55930 ATOPT1, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, OPT1, oligopeptide transporter 1 0.280 0.392
12 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 0.274 0.657
13 264788_at AT2G17880 DJC24, DNA J protein C24 0.271 -0.541
14 259166_at AT3G01670 AtSEOR2, Arabidopsis thaliana sieve element occlusion-related 2, SEOa, sieve element occlusion a, SEOR2, sieve element occlusion-related 2 0.270 -0.191
15 264197_at AT1G22620 ATSAC1, suppressor of actin 1 0.265 0.956
16 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.264 -0.346
17 251494_at AT3G59350 [Protein kinase superfamily protein] 0.260 0.672
18 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 0.255 -0.044
19 252387_at AT3G47800 [Galactose mutarotase-like superfamily protein] 0.246 0.510
20 250958_at AT5G03260 LAC11, laccase 11 0.244 -0.745
21 259982_at AT1G76410 ATL8 0.243 -0.535
22 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 0.238 0.593
23 255417_at AT4G03190 AFB1, AUXIN SIGNALING F BOX PROTEIN 1, ATGRH1, GRH1, GRR1-like protein 1 0.238 0.554
24 253908_at AT4G27260 GH3.5, WES1 0.235 -0.363
25 252456_at AT3G47170 [HXXXD-type acyl-transferase family protein] 0.234 -0.599
26 250134_at AT5G16505 MUG4, MUSTANG 4 0.234 0.920
27 262797_at AT1G20840 AtTMT1, TMT1, tonoplast monosaccharide transporter1 0.231 -0.026
28 258100_at AT3G23550 [MATE efflux family protein] 0.229 -0.557
29 260556_at AT2G43620 [Chitinase family protein] 0.228 0.373
30 255568_at AT4G01250 AtWRKY22, WRKY22 0.224 0.135
31 262324_at AT1G64170 ATCHX16, cation/H+ exchanger 16, CHX16, cation/H+ exchanger 16 0.224 -0.428
32 264493_at AT1G27440 ATGUT1, GUT2, IRX10 0.221 0.026
33 256429_at AT3G11040 AtENGase85B, ENGase85B, Endo-beta-N-acetyglucosaminidase 85B 0.211 0.431
34 254246_at AT4G23250 CRK17, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 17, DUF26-21, EMB1290, EMBRYO DEFECTIVE 1290, RKC1, RECEPTOR-LIKE KINASE THALIANACOL-0GENOMICLIBRARY(CLONTECH).THEPOSITIVEPHAGECLONES C-X8-C-X2-C CLASS 1 0.210 -0.752
35 245792_at AT1G32100 ATPRR1, PRR1, pinoresinol reductase 1 0.210 0.201
36 253524_at AT4G31430 unknown 0.208 0.935
37 253402_at AT4G32880 ATHB-8, homeobox gene 8, ATHB8, HB-8, homeobox gene 8 0.207 -0.132
38 260282_at AT1G80410 EMB2753, EMBRYO DEFECTIVE 2753, OMA, OMISHA 0.206 -0.261
39 262297_at AT1G27600 I9H, IRREGULAR XYLEM 9 Homolog, IRX9-L, IRREGULAR XYLEM 9-LIKE 0.202 0.123
40 258556_at AT3G07020 SGT, sterol glucosyltransferase, UGT80A2, UDP-glucosyl transferase 80A2 0.202 0.637
41 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 0.199 0.085
42 249345_at AT5G40740 AUG6, augmin subunit 6 0.199 0.570
43 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 0.196 -0.392
44 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 0.196 -0.064
45 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.195 -0.591
46 250777_at AT5G05440 PYL5, PYRABACTIN RESISTANCE 1-LIKE 5, RCAR8, regulatory component of ABA receptor 8 0.191 0.996
47 250657_at AT5G07000 ATST2B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, ST2B, sulfotransferase 2B 0.191 0.216
48 250664_at AT5G07080 [HXXXD-type acyl-transferase family protein] 0.189 -1.017
49 254091_at AT4G25070 unknown 0.185 -0.559
50 266783_at AT2G29130 ATLAC2, LAC2, laccase 2 0.184 -1.138
51 260728_at AT1G48210 [Protein kinase superfamily protein] 0.183 0.126
52 259398_at AT1G17700 PRA1.F1, prenylated RAB acceptor 1.F1 0.181 -0.675
53 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.180 -0.793
54 262686_at AT1G75990 [PAM domain (PCI/PINT associated module) protein] 0.179 0.548
55 266860_at AT2G26870 NPC2, non-specific phospholipase C2 0.178 -0.508
56 259182_at AT3G01750 [Ankyrin repeat family protein] 0.177 -0.379
57 258366_at AT3G14230 RAP2.2, related to AP2 2 0.177 0.276
58 258382_at AT3G15355 PFU1, PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, UBC25, ubiquitin-conjugating enzyme 25 0.175 -0.740
59 266984_at AT2G39570 ACR9, ACT domain repeats 9 0.175 1.368
60 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 0.175 0.883
61 246511_at AT5G15490 UGD3, UDP-glucose dehydrogenase 3 0.174 0.605
62 252121_at AT3G51160 GMD2, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, MUR1, MURUS 1, MUR_1, MURUS 1 0.173 1.279
63 266140_at AT2G28120 [Major facilitator superfamily protein] 0.172 -0.464
64 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 0.171 0.588
65 245362_at AT4G17460 HAT1, JAB, JAIBA 0.169 -0.707
66 252022_at AT3G52930 AtFBA8, FBA8, fructose-bisphosphate aldolase 8 0.168 0.561
67 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.165 0.390
68 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 0.165 0.225
69 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor 0.164 0.452
70 245697_at AT5G04200 AtMC9, metacaspase 9, AtMCP2f, metacaspase 2f, MC9, metacaspase 9, MCP2f, metacaspase 2f 0.163 -1.037
71 252939_at AT4G39230 [NmrA-like negative transcriptional regulator family protein] 0.163 -0.172
72 266995_at AT2G34500 CYP710A1, cytochrome P450, family 710, subfamily A, polypeptide 1 0.161 -0.854
73 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 0.159 0.858
74 251534_at AT3G58510 [DEA(D/H)-box RNA helicase family protein] 0.158 1.074
75 251069_at AT5G01930 AtMAN6, MAN6, endo-beta-mannase 6 0.157 -0.797
76 258416_at AT3G17310 AtDRM3, DRM3, domains rearranged methyltransferase 3 0.156 -0.277
77 262885_at AT1G64740 TUA1, alpha-1 tubulin 0.156 0.411
78 247145_at AT5G65600 LecRK-IX.2, L-type lectin receptor kinase IX.2 0.154 -0.880
79 255258_at AT4G05060 [PapD-like superfamily protein] 0.154 0.177
80 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 0.152 0.286
81 264013_at AT2G21070 FIO1, FIONA1 0.151 0.425
82 250738_at AT5G05730 AMT1, A-METHYL TRYPTOPHAN RESISTANT 1, ASA1, anthranilate synthase alpha subunit 1, JDL1, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, TRP5, TRYPTOPHAN BIOSYNTHESIS 5, WEI2, WEAK ETHYLENE INSENSITIVE 2 0.150 0.714
83 252994_at AT4G38480 [Transducin/WD40 repeat-like superfamily protein] 0.147 0.813
84 266372_at AT2G41310 ARR8, RESPONSE REGULATOR 8, ATRR3, response regulator 3, RR3, response regulator 3 -0.499 0.509
85 258349_at AT3G17609 HYH, HY5-homolog -0.468 0.004
86 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.461 0.732
87 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.425 0.531
88 248471_at AT5G50840 unknown -0.420 -0.200
89 253993_at AT4G26070 ATMEK1, MEK1, MAP kinase/ ERK kinase 1, MKK1, MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, NMAPKK -0.409 -0.545
90 245426_at AT4G17540 unknown -0.394 0.280
91 248378_at AT5G51840 unknown -0.381 1.002
92 247942_at AT5G57120 unknown -0.378 -0.012
93 259415_at AT1G02330 unknown -0.377 0.084
94 248246_at AT5G53200 TRY, TRIPTYCHON -0.371 -0.241
95 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.370 -0.408
96 245743_at AT1G51080 unknown -0.370 -0.241
97 262871_at AT1G65010 [INVOLVED IN: flower development] -0.367 -0.329
98 256379_at AT1G66840 PMI2, plastid movement impaired 2, WEB2, WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2 -0.359 0.147
99 248869_at AT5G46840 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.358 0.611
100 249886_at AT5G22320 [Leucine-rich repeat (LRR) family protein] -0.354 0.987
101 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.350 -0.196
102 261407_at AT1G18810 [phytochrome kinase substrate-related] -0.342 -0.932
103 262137_at AT1G77920 TGA7, TGACG sequence-specific binding protein 7 -0.338 0.584
104 266310_at AT2G26990 ATCSN2, COP12, CONSTITUTIVE PHOTOMORPHOGENIC 12, CSN2, FUS12, FUSCA 12 -0.338 0.452
105 252938_at AT4G39190 unknown -0.335 -0.367
106 248867_at AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -0.328 -0.756
107 252346_at AT3G48650 [pseudogene] -0.326 -1.028
108 263412_at AT2G28720 [Histone superfamily protein] -0.318 -0.055
109 266384_at AT2G14660 unknown -0.313 0.358
110 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 -0.307 0.504
111 247032_at AT5G67240 SDN3, small RNA degrading nuclease 3 -0.301 0.387
112 255579_at AT4G01460 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.299 0.169
113 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.292 0.617
114 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 -0.292 0.120
115 266537_at AT2G16860 [GCIP-interacting family protein] -0.287 0.117
116 254145_at AT4G24700 unknown -0.283 0.526
117 263039_at AT1G23280 [MAK16 protein-related] -0.281 0.266
118 249811_at AT5G23760 [Copper transport protein family] -0.281 1.253
119 249528_at AT5G38720 unknown -0.277 0.928
120 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.275 -0.468
121 264094_at AT1G79200 SCI1, stigma/style cell-cycle inhibitor 1 -0.270 -0.086
122 258935_at AT3G10120 unknown -0.266 -1.284
123 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] -0.266 0.452
124 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 -0.265 -0.703
125 247293_at AT5G64510 TIN1, tunicamycin induced 1 -0.260 -0.389
126 255438_at AT4G03070 AOP, AOP1, AOP1.1 -0.260 1.120
127 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.260 -0.640
128 251887_at AT3G54170 ATFIP37, FKBP12 interacting protein 37, FIP37, FKBP12 interacting protein 37 -0.259 -0.381
129 263545_at AT2G21560 unknown -0.258 0.141
130 260981_at AT1G53460 unknown -0.258 0.995
131 247977_at AT5G56850 unknown -0.257 0.562
132 248936_at AT5G45710 AT-HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, RHA1, ROOT HANDEDNESS 1 -0.252 0.602
133 249404_at AT5G40160 EMB139, EMBRYO DEFECTIVE 139, EMB506, embryo defective 506 -0.250 0.254
134 245588_at AT4G15030 unknown -0.247 0.115
135 258260_at AT3G26850 [histone-lysine N-methyltransferases] -0.247 -0.072
136 254427_at AT4G21190 emb1417, embryo defective 1417 -0.246 0.463
137 258084_at AT3G26020 [Protein phosphatase 2A regulatory B subunit family protein] -0.245 -0.193
138 251600_at AT3G57710 [Protein kinase superfamily protein] -0.243 -0.199
139 266049_at AT2G40780 [Nucleic acid-binding, OB-fold-like protein] -0.238 0.458
140 258744_at AT3G05830 unknown -0.236 -0.263
141 256910_at AT3G24080 [KRR1 family protein] -0.236 0.524
142 250543_at AT5G08190 NF-YB12, nuclear factor Y, subunit B12 -0.236 -0.057
143 248251_at AT5G53220 unknown -0.234 -1.189
144 252319_at AT3G48710 [DEK domain-containing chromatin associated protein] -0.233 -0.001
145 261207_at AT1G12830 unknown -0.233 0.058
146 262984_at AT1G54460 [TPX2 (targeting protein for Xklp2) protein family] -0.231 0.748
147 250728_at AT5G06440 unknown -0.230 -0.302
148 257285_at AT3G29760 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.224 0.675
149 266480_at AT2G31130 unknown -0.224 0.131
150 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] -0.223 -0.311
151 256529_at AT1G33260 [Protein kinase superfamily protein] -0.222 -1.104
152 249863_at AT5G22950 VPS24.1 -0.222 -0.216
153 266776_at AT2G29070 [Ubiquitin fusion degradation UFD1 family protein] -0.221 -0.091
154 265909_at AT2G25720 unknown -0.220 0.311
155 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 -0.218 0.210
156 259207_at AT3G09050 unknown -0.218 -0.158
157 246487_at AT5G16030 unknown -0.216 0.538
158 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 -0.216 -0.621
159 258017_at AT3G19370 unknown -0.215 -0.725
160 260009_at AT1G67950 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.215 0.731
161 250380_at AT5G11600 unknown -0.212 -0.173
162 255449_at AT4G02820 [Pentatricopeptide repeat (PPR) superfamily protein] -0.211 1.185
163 263690_at AT1G26960 AtHB23, homeobox protein 23, HB23, homeobox protein 23 -0.210 0.216
164 261138_at AT1G19710 [UDP-Glycosyltransferase superfamily protein] -0.209 -0.102
165 254955_at AT4G10920 KELP -0.208 0.387