4.0:Information of module
ahg2-1abi1-1
In comparison with upb1-1 elongation zone help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009451 RNA modification BP 2.167e-08
GO:0001510 RNA methylation BP 9.704e-08
GO:0007292 female gamete generation BP 1.025e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010053 root epidermal cell differentiation BP 3.593e-07
GO:0010054 trichoblast differentiation BP 4.840e-07
GO:0090627 plant epidermal cell differentiation BP 5.161e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ahg2-1abi1-1		 Log2 signal ratio
upb1-1 elongation zone
1 255471_at AT4G03050 AOP3 1.238 0.028
2 252345_at AT3G48640 unknown 0.910 0.007
3 253532_at AT4G31570 unknown 0.832 0.066
4 257333_at ATMG01360 COX1, cytochrome oxidase 0.831 -0.037
5 244901_at ATMG00640 ORF25 0.811 0.010
6 254566_at AT4G19240 unknown 0.796 0.030
7 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.782 0.042
8 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 0.758 0.051
9 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.749 -0.010
10 244945_at ATMG00110 ABCI2, ATP-binding cassette I2, CCB206, cytochrome C biogenesis 206 0.726 0.039
11 257417_at AT1G10110 [F-box family protein] 0.658 0.036
12 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.654 -0.040
13 249495_at AT5G39100 GLP6, germin-like protein 6 0.635 -0.046
14 250135_at AT5G15360 unknown 0.634 0.068
15 248695_at AT5G48350 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.623 -0.033
16 253689_at AT4G29770 unknown 0.613 -0.072
17 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 0.607 0.096
18 263515_at AT2G21640 unknown 0.541 -0.114
19 257057_at AT3G15310 unknown 0.531 0.033
20 254419_at AT4G21490 NDB3, NAD(P)H dehydrogenase B3 0.518 -0.015
21 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.515 -0.032
22 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 0.506 0.097
23 254350_at AT4G22280 [F-box/RNI-like superfamily protein] 0.505 -0.050
24 244925_at ATMG00510 NAD7, NADH dehydrogenase subunit 7 0.496 -0.015
25 248734_at AT5G48090 ELP1, EDM2-like protein1 0.490 -0.078
26 257321_at ATMG01130 ORF106F 0.479 -0.031
27 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.469 0.074
28 249461_at AT5G39640 [Putative endonuclease or glycosyl hydrolase] 0.465 0.050
29 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] 0.460 0.035
30 255621_at AT4G01390 [TRAF-like family protein] 0.460 -0.010
31 244902_at ATMG00650 NAD4L, NADH dehydrogenase subunit 4L 0.439 -0.030
32 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.432 -0.000
33 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.421 -0.074
34 257947_at AT3G21720 ICL, isocitrate lyase 0.405 -0.087
35 266729_at AT2G03130 [Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein] 0.386 0.025
36 246888_at AT5G26270 unknown 0.382 0.102
37 260473_at AT1G10880 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.371 0.012
38 256188_at AT1G30160 unknown 0.361 0.033
39 254266_at AT4G23130 CRK5, cysteine-rich RLK (RECEPTOR-like protein kinase) 5, RLK6, RECEPTOR-LIKE PROTEIN KINASE 6 0.361 -0.011
40 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 0.358 -0.006
41 248835_at AT5G47250 [LRR and NB-ARC domains-containing disease resistance protein] 0.351 0.137
42 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.348 0.160
43 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.346 -0.207
44 256976_at AT3G21020 [copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 0.338 -0.030
45 248394_at AT5G52070 [Agenet domain-containing protein] 0.329 -0.160
46 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.323 0.082
47 248148_at AT5G54930 [AT hook motif-containing protein] 0.314 -0.033
48 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 0.313 0.160
49 266830_at AT2G22810 ACC4, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, ACS4, 1-aminocyclopropane-1-carboxylate synthase 4, ATACS4 0.310 -0.045
50 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] 0.304 0.079
51 253835_at AT4G27820 BGLU9, beta glucosidase 9 0.303 0.044
52 253945_at AT4G27050 [F-box/RNI-like superfamily protein] 0.303 0.018
53 255613_at AT4G01270 [RING/U-box superfamily protein] 0.301 -0.129
54 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.298 -0.002
55 258890_at AT3G05690 ATHAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, HAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, NF-YA2, nuclear factor Y, subunit A2, UNE8, UNFERTILIZED EMBRYO SAC 8 0.289 -0.007
56 245446_at AT4G16800 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.284 -0.117
57 257323_at ATMG01200 ORF294 0.280 -0.000
58 264830_at AT1G03710 [Cystatin/monellin superfamily protein] 0.275 0.017
59 258741_at AT3G05790 LON4, lon protease 4 0.274 0.027
60 265668_at AT2G32020 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.267 -0.159
61 244921_s_at ATMG01000 ORF114 0.265 0.045
62 247250_at AT5G64630 FAS2, FASCIATA 2, MUB3.9, NFB01, NFB1 0.260 0.019
63 247015_at AT5G66960 [Prolyl oligopeptidase family protein] 0.260 -0.055
64 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 0.253 0.020
65 255807_at AT4G10270 [Wound-responsive family protein] 0.251 -0.017
66 254287_at AT4G22960 unknown 0.250 0.040
67 256830_at AT3G22860 ATEIF3C-2, ATTIF3C2, EIF3C-2, EUKARYOTIC INITIATION FACTOR 3C-2, TIF3C2, eukaryotic translation initiation factor 3 subunit C2 0.250 0.067
68 247640_at AT5G60610 [F-box/RNI-like superfamily protein] 0.249 -0.073
69 261221_at AT1G19960 unknown 0.249 -0.051
70 258380_at AT3G16650 PRL2, Pleiotropic regulatory locus 2 0.246 -0.061
71 262421_at AT1G50290 unknown 0.242 0.201
72 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 0.241 -0.114
73 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.237 0.151
74 260464_at AT1G10920 LOV1, LOCUS ORCHESTRATING VICTORIN EFFECTS1 0.236 0.080
75 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 0.230 0.134
76 259632_at AT1G56430 ATNAS4, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, NAS4, nicotianamine synthase 4 0.226 0.014
77 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.224 0.054
78 254867_at AT4G12240 [zinc finger (C2H2 type) family protein] 0.223 0.016
79 246282_at AT4G36580 [AAA-type ATPase family protein] 0.223 -0.074
80 250365_at AT5G11410 [Protein kinase superfamily protein] 0.222 -0.014
81 262508_at AT1G11300 [protein serine/threonine kinases] 0.222 -0.030
82 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 0.221 0.061
83 251864_at AT3G54920 PMR6, powdery mildew resistant 6 0.219 -0.101
84 252281_at AT3G49320 [Metal-dependent protein hydrolase] 0.218 -0.082
85 248877_at AT5G46140 unknown 0.218 -0.047
86 258198_at AT3G14020 NF-YA6, nuclear factor Y, subunit A6 0.217 0.016
87 247753_at AT5G59070 [UDP-Glycosyltransferase superfamily protein] 0.211 -0.397
88 249386_at AT5G40060 [Disease resistance protein (NBS-LRR class) family] 0.209 0.135
89 252551_at AT3G45880 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.204 -0.082
90 265154_at AT1G30960 [GTP-binding family protein] 0.203 -0.081
91 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.202 0.090
92 248944_at AT5G45500 [RNI-like superfamily protein] -1.207 0.109
93 254377_at AT4G21650 [Subtilase family protein] -1.112 -0.003
94 254585_at AT4G19500 [nucleoside-triphosphatases] -0.984 -0.027
95 254481_at AT4G20480 [Putative endonuclease or glycosyl hydrolase] -0.962 -0.005
96 249205_at AT5G42600 MRN1, marneral synthase 1 -0.945 0.166
97 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -0.919 0.052
98 255160_at AT4G07820 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.823 -0.081
99 248016_at AT5G56380 [F-box/RNI-like/FBD-like domains-containing protein] -0.768 -0.040
100 247755_at AT5G59090 ATSBT4.12, subtilase 4.12, SBT4.12, subtilase 4.12 -0.731 0.057
101 245451_at AT4G16890 BAL, BALL, SNC1, SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 -0.729 0.033
102 248978_at AT5G45070 AtPP2-A8, phloem protein 2-A8, PP2-A8, phloem protein 2-A8 -0.627 0.097
103 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 -0.621 -0.059
104 249331_at AT5G40950 RPL27, ribosomal protein large subunit 27 -0.613 -0.115
105 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.596 0.085
106 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 -0.595 0.030
107 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.585 -0.014
108 248847_at AT5G46510 VICTL, VARIATION IN COMPOUND TRIGGERED ROOT growth response-like -0.581 0.129
109 247988_at AT5G56910 [Proteinase inhibitor I25, cystatin, conserved region] -0.575 -0.061
110 255181_at AT4G08110 [CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-66 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.572 0.088
111 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.560 0.279
112 254447_at AT4G20860 [FAD-binding Berberine family protein] -0.540 0.205
113 247714_at AT5G59340 WOX2, WUSCHEL related homeobox 2 -0.530 0.041
114 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 -0.522 0.237
115 249203_at AT5G42590 CYP71A16, cytochrome P450, family 71, subfamily A, polypeptide 16, MRO, marneral oxidase -0.500 0.141
116 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 -0.487 0.065
117 253073_at AT4G37410 CYP81F4, cytochrome P450, family 81, subfamily F, polypeptide 4 -0.486 -0.092
118 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 -0.482 0.336
119 249188_at AT5G42830 [HXXXD-type acyl-transferase family protein] -0.450 0.230
120 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 -0.447 0.050
121 248954_at AT5G45420 maMYB, membrane anchored MYB -0.447 -0.077
122 254586_at AT4G19510 [Disease resistance protein (TIR-NBS-LRR class)] -0.440 0.019
123 249097_at AT5G43520 [Cysteine/Histidine-rich C1 domain family protein] -0.432 0.176
124 254512_at AT4G20230 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.430 0.118
125 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -0.415 0.726
126 255121_at AT4G08480 MAPKKK9, mitogen-activated protein kinase kinase kinase 9, MEKK2, MAPK/ERK KINASE KINASE 2, SUMM1, suppressor of mkk1 mkk2 1 -0.412 0.010
127 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.405 -0.001
128 249355_at AT5G40500 unknown -0.401 -0.132
129 255627_at AT4G00955 unknown -0.400 0.125
130 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.399 -0.032
131 266098_at AT2G37870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.397 0.029
132 255450_at AT4G02850 [phenazine biosynthesis PhzC/PhzF family protein] -0.396 0.001
133 248976_at AT5G44930 ARAD2, ARABINAN DEFICIENT 2 -0.395 0.060
134 256603_at AT3G28270 unknown -0.393 0.104
135 248722_at AT5G47810 PFK2, phosphofructokinase 2 -0.387 0.015
136 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.384 0.245
137 248539_at AT5G50130 [NAD(P)-binding Rossmann-fold superfamily protein] -0.383 -0.055
138 250778_at AT5G05500 MOP10 -0.378 0.389
139 252937_at AT4G39180 ATSEC14, ARABIDOPSIS THALIANA SECRETION 14, SEC14, SECRETION 14 -0.366 -0.010
140 246991_at AT5G67400 RHS19, root hair specific 19 -0.366 0.731
141 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A -0.366 0.366
142 265102_at AT1G30870 [Peroxidase superfamily protein] -0.365 0.465
143 261059_at AT1G01250 [Integrase-type DNA-binding superfamily protein] -0.362 -0.005
144 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] -0.361 0.263
145 247167_at AT5G65850 [F-box and associated interaction domains-containing protein] -0.358 -0.096
146 247934_at AT5G57000 unknown -0.358 0.136
147 249124_at AT5G43740 [Disease resistance protein (CC-NBS-LRR class) family] -0.357 0.042
148 248977_at AT5G45020 [Glutathione S-transferase family protein] -0.351 -0.109
149 267191_at AT2G44110 ATMLO15, MILDEW RESISTANCE LOCUS O 15, MLO15, MILDEW RESISTANCE LOCUS O 15 -0.349 0.316
150 248079_at AT5G55790 unknown -0.349 -0.094
151 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.347 0.127
152 248706_at AT5G48530 unknown -0.342 0.006
153 252822_at AT4G39955 [alpha/beta-Hydrolases superfamily protein] -0.337 -0.082
154 245453_at AT4G16900 [Disease resistance protein (TIR-NBS-LRR class) family] -0.335 0.081
155 247704_at AT5G59510 DVL18, DEVIL 18, RTFL5, ROTUNDIFOLIA like 5 -0.320 -0.018
156 264459_at AT1G10160 [non-LTR retrotransposon family (LINE), has a 3.9e-39 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)] -0.319 0.066
157 262347_at AT1G64110 DAA1, DUO1-activated ATPase 1 -0.318 -0.090
158 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 -0.317 0.000
159 249123_at AT5G43760 KCS20, 3-ketoacyl-CoA synthase 20 -0.316 0.060
160 247486_at AT5G62140 unknown -0.309 0.045
161 248293_at AT5G53050 [alpha/beta-Hydrolases superfamily protein] -0.306 0.036
162 252888_at AT4G39210 APL3 -0.303 -0.040
163 264734_at AT1G62280 SLAH1, SLAC1 homologue 1 -0.299 -0.045
164 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.299 0.675
165 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.295 0.589
166 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] -0.292 -0.021
167 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.291 -0.010
168 258765_at AT3G10710 RHS12, root hair specific 12 -0.290 0.905
169 248207_at AT5G53970 TAT7, tyrosine aminotransferase 7 -0.280 0.006
170 254313_at AT4G22460 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.280 0.152
171 245412_at AT4G17280 [Auxin-responsive family protein] -0.279 0.126
172 249320_at AT5G40910 [Disease resistance protein (TIR-NBS-LRR class) family] -0.276 -0.106
173 254299_at AT4G22920 ATNYE1, NON-YELLOWING 1, NYE1, NON-YELLOWING 1, SGR, STAY-GREEN -0.275 0.078
174 262349_at AT2G48130 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.271 0.049
175 249797_at AT5G23750 [Remorin family protein] -0.268 0.185
176 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.261 0.378
177 253582_at AT4G30670 [Putative membrane lipoprotein] -0.259 0.206
178 248934_at AT5G46080 [Protein kinase superfamily protein] -0.258 0.075
179 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] -0.254 -0.074
180 245327_at AT4G16850 unknown -0.250 -0.094
181 254697_at AT4G17970 ALMT12, aluminum-activated, malate transporter 12, ATALMT12, QUAC1, quick-activating anion channel 1 -0.246 0.062