4.0:Information of module
sfr3 cold
In comparison with 21h-DC3000 hrpA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:2000280 regulation of root development BP 8.004e-03
GO:0042221 response to chemical BP 1.515e-02
GO:0001101 response to acid chemical BP 1.750e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.094e-05
GO:0042127 regulation of cell proliferation BP 5.814e-03
GO:0016998 cell wall macromolecule catabolic proces... BP 7.519e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
sfr3 cold		 Log2 signal ratio
21h-DC3000 hrpA
1 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.866 0.039
2 245553_at AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 0.443 -0.027
3 257679_at AT3G20470 ATGRP-5, ATGRP5, GRP-5, GLYCINE-RICH PROTEIN 5, GRP5, glycine-rich protein 5 0.384 0.041
4 262510_at AT1G11270 [F-box and associated interaction domains-containing protein] 0.363 0.064
5 256966_at AT3G13400 sks13, SKU5 similar 13 0.345 -0.047
6 248368_at AT5G51950 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.306 -0.042
7 260886_at AT1G29200 [O-fucosyltransferase family protein] 0.265 -0.056
8 257229_at AT3G16490 IQD26, IQ-domain 26 0.254 -0.080
9 267160_at AT2G37670 [Transducin/WD40 repeat-like superfamily protein] 0.250 -0.019
10 247633_at AT5G60470 [C2H2 and C2HC zinc fingers superfamily protein] 0.245 0.026
11 251180_at AT3G62640 unknown 0.238 -0.036
12 245614_at AT4G14460 [copia-like retrotransposon family, has a 4.2e-253 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.233 -0.038
13 263018_at AT2G17610 [non-LTR retrotransposon family (LINE), has a 3.6e-21 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)] 0.219 0.006
14 249704_at AT5G35550 ATMYB123, MYB DOMAIN PROTEIN 123, ATTT2, MYB123, MYB DOMAIN PROTEIN 123, TT2, TRANSPARENT TESTA 2 0.210 -0.030
15 250514_at AT5G09550 GDI, RAB GDP-dissociation inhibitor 0.205 -0.001
16 259553_x_at AT1G21310 ATEXT3, extensin 3, EXT3, extensin 3, RSH, ROOT-SHOOT-HYPOCOTYL DEFECTIVE 0.193 -0.050
17 252447_at AT3G47040 [Glycosyl hydrolase family protein] 0.187 -0.010
18 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] 0.186 0.012
19 263991_at AT2G13020 [gypsy-like retrotransposon family (Athila), has a 7.3e-101 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 0.180 -0.109
20 256893_x_at AT3G30660 unknown 0.178 -0.090
21 267206_at AT2G30830 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.177 -0.278
22 267624_at AT2G39660 BIK1, botrytis-induced kinase1 0.177 -0.031
23 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 0.174 0.097
24 265127_at AT1G55560 sks14, SKU5 similar 14 0.171 -0.005
25 246592_at AT5G14890 [NHL domain-containing protein] 0.170 0.025
26 257737_at AT3G27440 UKL5, uridine kinase-like 5 0.169 -0.062
27 249882_at AT5G22890 STOP2, sensitive to proton rhizotoxicity 2 0.169 0.008
28 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] 0.169 -0.025
29 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.630 0.068
30 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.450 0.086
31 250788_at AT5G05570 [transducin family protein / WD-40 repeat family protein] -0.409 -0.030
32 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.361 0.044
33 266668_at AT2G29760 OTP81, ORGANELLE TRANSCRIPT PROCESSING 81 -0.361 0.126
34 249836_at AT5G23420 HMGB6, high-mobility group box 6 -0.359 0.111
35 248533_at AT5G50020 [DHHC-type zinc finger family protein] -0.355 -0.023
36 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 -0.324 -0.017
37 246115_at AT5G20300 Toc90, translocon at the outer envelope membrane of chloroplasts 90 -0.298 0.004
38 262538_at AT1G17140 ICR1, interactor of constitutive active rops 1, RIP1, ROP INTERACTIVE PARTNER 1 -0.294 0.091
39 262596_at AT1G15080 ATLPP2, LIPID PHOSPHATE PHOSPHATASE 2, ATPAP2, PHOSPHATIDIC ACID PHOSPHATASE 2, LPP2, lipid phosphate phosphatase 2 -0.281 0.030
40 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase -0.280 -0.023
41 257875_at AT3G17120 unknown -0.274 -0.054
42 266590_at AT2G46240 ATBAG6, ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BAG6, BCL-2-associated athanogene 6 -0.268 -0.004
43 267388_at AT2G44450 BGLU15, beta glucosidase 15 -0.261 -0.049
44 265522_at AT2G06210 ELF8, EARLY FLOWERING 8, VIP6, VERNALIZATION INDEPENDENCE 6 -0.260 -0.050
45 252629_at AT3G44970 [Cytochrome P450 superfamily protein] -0.258 -0.129
46 267036_at AT2G38465 unknown -0.243 -0.072
47 265454_at AT2G46530 ARF11, auxin response factor 11 -0.241 0.136
48 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 -0.238 -0.028
49 249943_at AT5G22280 unknown -0.237 0.010
50 252001_at AT3G52750 FTSZ2-2 -0.229 0.000
51 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.221 0.016
52 264340_at AT1G70280 [NHL domain-containing protein] -0.220 0.010
53 253292_at AT4G33985 unknown -0.219 -0.013
54 248485_at AT5G51050 APC2, ATP/phosphate carrier 2 -0.217 -0.003
55 250936_at AT5G03120 unknown -0.217 -0.063