4.0:Information of module
sfr3 cold
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:2000280 regulation of root development BP 8.004e-03
GO:0042221 response to chemical BP 1.515e-02
GO:0001101 response to acid chemical BP 1.750e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.094e-05
GO:0042127 regulation of cell proliferation BP 5.814e-03
GO:0016998 cell wall macromolecule catabolic proces... BP 7.519e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
sfr3 cold		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg)
1 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.866 0.198
2 245553_at AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 0.443 -0.425
3 257679_at AT3G20470 ATGRP-5, ATGRP5, GRP-5, GLYCINE-RICH PROTEIN 5, GRP5, glycine-rich protein 5 0.384 0.143
4 262510_at AT1G11270 [F-box and associated interaction domains-containing protein] 0.363 -0.436
5 256966_at AT3G13400 sks13, SKU5 similar 13 0.345 0.674
6 248368_at AT5G51950 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.306 -1.082
7 260886_at AT1G29200 [O-fucosyltransferase family protein] 0.265 -0.377
8 257229_at AT3G16490 IQD26, IQ-domain 26 0.254 0.312
9 267160_at AT2G37670 [Transducin/WD40 repeat-like superfamily protein] 0.250 -0.300
10 247633_at AT5G60470 [C2H2 and C2HC zinc fingers superfamily protein] 0.245 0.435
11 251180_at AT3G62640 unknown 0.238 -1.379
12 245614_at AT4G14460 [copia-like retrotransposon family, has a 4.2e-253 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.233 -0.296
13 263018_at AT2G17610 [non-LTR retrotransposon family (LINE), has a 3.6e-21 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)] 0.219 -0.537
14 249704_at AT5G35550 ATMYB123, MYB DOMAIN PROTEIN 123, ATTT2, MYB123, MYB DOMAIN PROTEIN 123, TT2, TRANSPARENT TESTA 2 0.210 -0.563
15 250514_at AT5G09550 GDI, RAB GDP-dissociation inhibitor 0.205 0.023
16 259553_x_at AT1G21310 ATEXT3, extensin 3, EXT3, extensin 3, RSH, ROOT-SHOOT-HYPOCOTYL DEFECTIVE 0.193 0.261
17 252447_at AT3G47040 [Glycosyl hydrolase family protein] 0.187 -0.091
18 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] 0.186 -0.553
19 263991_at AT2G13020 [gypsy-like retrotransposon family (Athila), has a 7.3e-101 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 0.180 -1.017
20 256893_x_at AT3G30660 unknown 0.178 0.265
21 267206_at AT2G30830 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.177 -0.861
22 267624_at AT2G39660 BIK1, botrytis-induced kinase1 0.177 0.148
23 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 0.174 -1.037
24 265127_at AT1G55560 sks14, SKU5 similar 14 0.171 0.046
25 246592_at AT5G14890 [NHL domain-containing protein] 0.170 -0.511
26 257737_at AT3G27440 UKL5, uridine kinase-like 5 0.169 -0.612
27 249882_at AT5G22890 STOP2, sensitive to proton rhizotoxicity 2 0.169 -0.030
28 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] 0.169 -0.478
29 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.630 0.789
30 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.450 -0.087
31 250788_at AT5G05570 [transducin family protein / WD-40 repeat family protein] -0.409 0.446
32 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.361 0.132
33 266668_at AT2G29760 OTP81, ORGANELLE TRANSCRIPT PROCESSING 81 -0.361 -0.752
34 249836_at AT5G23420 HMGB6, high-mobility group box 6 -0.359 -0.196
35 248533_at AT5G50020 [DHHC-type zinc finger family protein] -0.355 -0.507
36 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 -0.324 -0.436
37 246115_at AT5G20300 Toc90, translocon at the outer envelope membrane of chloroplasts 90 -0.298 0.175
38 262538_at AT1G17140 ICR1, interactor of constitutive active rops 1, RIP1, ROP INTERACTIVE PARTNER 1 -0.294 0.013
39 262596_at AT1G15080 ATLPP2, LIPID PHOSPHATE PHOSPHATASE 2, ATPAP2, PHOSPHATIDIC ACID PHOSPHATASE 2, LPP2, lipid phosphate phosphatase 2 -0.281 -0.681
40 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase -0.280 -0.391
41 257875_at AT3G17120 unknown -0.274 0.798
42 266590_at AT2G46240 ATBAG6, ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BAG6, BCL-2-associated athanogene 6 -0.268 -0.649
43 267388_at AT2G44450 BGLU15, beta glucosidase 15 -0.261 0.130
44 265522_at AT2G06210 ELF8, EARLY FLOWERING 8, VIP6, VERNALIZATION INDEPENDENCE 6 -0.260 1.011
45 252629_at AT3G44970 [Cytochrome P450 superfamily protein] -0.258 0.451
46 267036_at AT2G38465 unknown -0.243 -0.681
47 265454_at AT2G46530 ARF11, auxin response factor 11 -0.241 -0.488
48 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 -0.238 -0.188
49 249943_at AT5G22280 unknown -0.237 0.382
50 252001_at AT3G52750 FTSZ2-2 -0.229 -0.241
51 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.221 -1.187
52 264340_at AT1G70280 [NHL domain-containing protein] -0.220 -0.454
53 253292_at AT4G33985 unknown -0.219 0.050
54 248485_at AT5G51050 APC2, ATP/phosphate carrier 2 -0.217 0.091
55 250936_at AT5G03120 unknown -0.217 -0.354