4.0:Information of module
sfr3 cold
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (8 dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:2000280 regulation of root development BP 8.004e-03
GO:0042221 response to chemical BP 1.515e-02
GO:0001101 response to acid chemical BP 1.750e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.094e-05
GO:0042127 regulation of cell proliferation BP 5.814e-03
GO:0016998 cell wall macromolecule catabolic proces... BP 7.519e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
sfr3 cold		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (8 dpg)
1 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.866 0.267
2 245553_at AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 0.443 -0.399
3 257679_at AT3G20470 ATGRP-5, ATGRP5, GRP-5, GLYCINE-RICH PROTEIN 5, GRP5, glycine-rich protein 5 0.384 0.087
4 262510_at AT1G11270 [F-box and associated interaction domains-containing protein] 0.363 -0.425
5 256966_at AT3G13400 sks13, SKU5 similar 13 0.345 0.569
6 248368_at AT5G51950 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.306 -1.123
7 260886_at AT1G29200 [O-fucosyltransferase family protein] 0.265 -0.233
8 257229_at AT3G16490 IQD26, IQ-domain 26 0.254 0.460
9 267160_at AT2G37670 [Transducin/WD40 repeat-like superfamily protein] 0.250 -0.383
10 247633_at AT5G60470 [C2H2 and C2HC zinc fingers superfamily protein] 0.245 0.314
11 251180_at AT3G62640 unknown 0.238 -1.338
12 245614_at AT4G14460 [copia-like retrotransposon family, has a 4.2e-253 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.233 -0.367
13 263018_at AT2G17610 [non-LTR retrotransposon family (LINE), has a 3.6e-21 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element)] 0.219 -0.512
14 249704_at AT5G35550 ATMYB123, MYB DOMAIN PROTEIN 123, ATTT2, MYB123, MYB DOMAIN PROTEIN 123, TT2, TRANSPARENT TESTA 2 0.210 -0.696
15 250514_at AT5G09550 GDI, RAB GDP-dissociation inhibitor 0.205 -0.057
16 259553_x_at AT1G21310 ATEXT3, extensin 3, EXT3, extensin 3, RSH, ROOT-SHOOT-HYPOCOTYL DEFECTIVE 0.193 -0.133
17 252447_at AT3G47040 [Glycosyl hydrolase family protein] 0.187 -0.054
18 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] 0.186 -0.685
19 263991_at AT2G13020 [gypsy-like retrotransposon family (Athila), has a 7.3e-101 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 0.180 -0.997
20 256893_x_at AT3G30660 unknown 0.178 0.315
21 267206_at AT2G30830 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.177 -0.890
22 267624_at AT2G39660 BIK1, botrytis-induced kinase1 0.177 0.005
23 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 0.174 -1.034
24 265127_at AT1G55560 sks14, SKU5 similar 14 0.171 0.028
25 246592_at AT5G14890 [NHL domain-containing protein] 0.170 -0.665
26 257737_at AT3G27440 UKL5, uridine kinase-like 5 0.169 -0.631
27 249882_at AT5G22890 STOP2, sensitive to proton rhizotoxicity 2 0.169 -0.094
28 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] 0.169 -0.518
29 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.630 1.059
30 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.450 -0.038
31 250788_at AT5G05570 [transducin family protein / WD-40 repeat family protein] -0.409 0.471
32 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.361 0.131
33 266668_at AT2G29760 OTP81, ORGANELLE TRANSCRIPT PROCESSING 81 -0.361 -0.648
34 249836_at AT5G23420 HMGB6, high-mobility group box 6 -0.359 -0.104
35 248533_at AT5G50020 [DHHC-type zinc finger family protein] -0.355 -0.412
36 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 -0.324 -0.543
37 246115_at AT5G20300 Toc90, translocon at the outer envelope membrane of chloroplasts 90 -0.298 0.082
38 262538_at AT1G17140 ICR1, interactor of constitutive active rops 1, RIP1, ROP INTERACTIVE PARTNER 1 -0.294 0.227
39 262596_at AT1G15080 ATLPP2, LIPID PHOSPHATE PHOSPHATASE 2, ATPAP2, PHOSPHATIDIC ACID PHOSPHATASE 2, LPP2, lipid phosphate phosphatase 2 -0.281 -0.641
40 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase -0.280 -0.578
41 257875_at AT3G17120 unknown -0.274 1.042
42 266590_at AT2G46240 ATBAG6, ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BAG6, BCL-2-associated athanogene 6 -0.268 -0.756
43 267388_at AT2G44450 BGLU15, beta glucosidase 15 -0.261 0.041
44 265522_at AT2G06210 ELF8, EARLY FLOWERING 8, VIP6, VERNALIZATION INDEPENDENCE 6 -0.260 1.131
45 252629_at AT3G44970 [Cytochrome P450 superfamily protein] -0.258 0.310
46 267036_at AT2G38465 unknown -0.243 -0.632
47 265454_at AT2G46530 ARF11, auxin response factor 11 -0.241 -0.537
48 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 -0.238 -0.639
49 249943_at AT5G22280 unknown -0.237 0.556
50 252001_at AT3G52750 FTSZ2-2 -0.229 -0.170
51 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.221 -1.241
52 264340_at AT1G70280 [NHL domain-containing protein] -0.220 -0.372
53 253292_at AT4G33985 unknown -0.219 0.186
54 248485_at AT5G51050 APC2, ATP/phosphate carrier 2 -0.217 0.249
55 250936_at AT5G03120 unknown -0.217 -0.526