4.0:Information of module
phyB mutant 16C 10hrs
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0071368 cellular response to cytokinin stimulus BP 3.913e-03
GO:0009735 response to cytokinin BP 1.241e-02
GO:0009117 nucleotide metabolic process BP 1.295e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009311 oligosaccharide metabolic process BP 7.695e-03
GO:0009846 pollen germination BP 1.084e-02
GO:0006551 leucine metabolic process BP 2.369e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
phyB mutant 16C 10hrs		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B 0.860 -0.149
2 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 0.249 0.589
3 246085_at AT5G20540 ATBRXL4, BREVIS RADIX-like 4, BRX-LIKE4, BRXL4, BREVIS RADIX-like 4 0.222 -0.570
4 252574_at AT3G45430 LecRK-I.5, L-type lectin receptor kinase I.5 0.216 -0.275
5 246235_at AT4G36830 HOS3-1 0.210 0.172
6 257331_at ATMG01330 ORF107H 0.204 -0.658
7 265252_at AT2G01980 ATNHX7, ARABIDOPSIS NA+/H+ ANTIPORTER 7, ATSOS1, ARABIDOPSIS SALT OVERLY SENSITIVE 1, SOS1, SALT OVERLY SENSITIVE 1 0.202 0.843
8 263794_at AT2G24620 [S-locus glycoprotein family protein] 0.195 -1.041
9 264805_at AT1G08600 ATRX, CHR20 0.193 -0.531
10 267343_at AT2G44260 unknown 0.190 -0.445
11 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 0.188 1.816
12 249622_at AT5G37550 unknown 0.186 0.568
13 254074_at AT4G25490 ATCBF1, CBF1, C-repeat/DRE binding factor 1, DREB1B, DRE BINDING PROTEIN 1B 0.170 -0.082
14 250685_at AT5G06670 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.159 -0.804
15 248864_at AT5G46760 MYC3 0.156 -0.350
16 252851_at AT4G40080 [ENTH/ANTH/VHS superfamily protein] -0.215 0.562
17 254705_at AT4G17870 PYR1, PYRABACTIN RESISTANCE 1, RCAR11, regulatory component of ABA receptor 11 -0.214 1.200
18 251188_at AT3G62730 unknown -0.207 -0.439
19 267455_at AT2G33760 [Pentatricopeptide repeat (PPR) superfamily protein] -0.207 0.265
20 253967_at AT4G26550 [Got1/Sft2-like vescicle transport protein family] -0.201 0.270
21 248769_at AT5G47730 [Sec14p-like phosphatidylinositol transfer family protein] -0.198 -0.026
22 262390_at AT1G49260 unknown -0.193 0.226
23 265611_at AT2G25510 unknown -0.184 -1.137
24 262667_at AT1G62810 CuAO1, COPPER AMINE OXIDASE1 -0.180 0.559
25 264889_at AT1G23050 hydroxyproline-rich glycoprotein family protein -0.175 -0.825
26 263038_at AT1G23270 unknown -0.170 -0.987
27 256361_at AT1G66520 pde194, pigment defective 194 -0.168 0.123
28 267588_at AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] -0.156 -0.984
29 257829_at AT3G26680 ATSNM1, SENSITIVE TO NITROGEN MUSTARD 1, SNM1, SENSITIVE TO NITROGEN MUSTARD 1 -0.153 -0.176