4.0:Information of module
20m.KNO3
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 1.058e-08
GO:0042221 response to chemical BP 3.337e-08
GO:0050896 response to stimulus BP 1.167e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019684 photosynthesis, light reaction BP 4.529e-09
GO:0015979 photosynthesis BP 5.741e-09
GO:0009416 response to light stimulus BP 8.362e-09
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
20m.KNO3		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 257645_at AT3G25790 [myb-like transcription factor family protein] 1.118 -0.002
2 250472_at AT5G10210 unknown 0.959 -0.031
3 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.830 -0.048
4 259015_at AT3G07350 unknown 0.823 -0.117
5 263402_at AT2G04050 [MATE efflux family protein] 0.784 0.058
6 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.761 -0.089
7 249923_at AT5G19120 [Eukaryotic aspartyl protease family protein] 0.735 -0.097
8 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.720 0.073
9 255945_at AT5G28610 unknown 0.718 -0.002
10 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.630 -0.019
11 255734_at AT1G25550 [myb-like transcription factor family protein] 0.626 0.055
12 246996_at AT5G67420 ASL39, ASYMMETRIC LEAVES2-LIKE 39, LBD37, LOB domain-containing protein 37 0.609 -0.148
13 254027_at AT4G25835 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.563 0.073
14 252220_at AT3G49940 LBD38, LOB domain-containing protein 38 0.554 0.003
15 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.544 0.021
16 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 0.530 0.131
17 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.519 0.029
18 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.512 0.029
19 246981_at AT5G04840 [bZIP protein] 0.501 0.025
20 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.492 0.051
21 260771_at AT1G49160 WNK7 0.483 -0.010
22 248392_at AT5G52050 [MATE efflux family protein] 0.458 0.014
23 262284_at AT1G68670 [myb-like transcription factor family protein] 0.445 0.025
24 246997_at AT5G67390 unknown 0.441 0.099
25 266409_at AT2G38510 [MATE efflux family protein] 0.435 0.039
26 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.434 0.088
27 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 0.433 -0.308
28 261481_at AT1G14260 [RING/FYVE/PHD zinc finger superfamily protein] 0.431 0.019
29 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] 0.423 -0.103
30 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 0.418 -0.036
31 265204_at AT2G36650 unknown 0.416 0.021
32 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 0.413 0.065
33 260059_at AT1G78090 ATTPPB, Arabidopsis thaliana trehalose-6-phosphate phosphatase B, TPPB, trehalose-6-phosphate phosphatase B 0.413 0.018
34 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 0.407 -0.074
35 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 0.404 0.026
36 258350_at AT3G17510 CIPK1, CBL-interacting protein kinase 1, SnRK3.16, SNF1-RELATED PROTEIN KINASE 3.16 0.397 0.004
37 254286_at AT4G22950 AGL19, AGAMOUS-like 19, GL19 0.396 0.064
38 260522_x_at AT2G41730 unknown 0.393 0.033
39 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.373 0.019
40 260284_at AT1G80380 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.372 -0.036
41 248319_at AT5G52710 [Copper transport protein family] 0.370 0.021
42 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 0.370 0.033
43 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.368 -0.041
44 246275_at AT4G36540 BEE2, BR enhanced expression 2 0.366 0.081
45 246142_at AT5G19970 unknown 0.366 -0.012
46 258606_at AT3G02840 [ARM repeat superfamily protein] 0.362 0.043
47 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] 0.362 -0.027
48 250107_at AT5G15330 ATSPX4, ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX4, SPX domain gene 4 0.359 0.031
49 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 0.357 0.008
50 248199_at AT5G54170 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.334 0.025
51 255230_at AT4G05390 ATRFNR1, root FNR 1, RFNR1, root FNR 1 0.331 -0.001
52 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.321 0.034
53 260851_at AT1G21890 UMAMIT19, Usually multiple acids move in and out Transporters 19 0.311 0.030
54 263452_at AT2G22190 TPPE, trehalose-6-phosphate phosphatase E 0.300 0.064
55 262731_at AT1G16420 ATMC8, ARABIDOPSIS THALIANA METACASPASE 8, AtMCP2e, metacaspase 2e, MC8, metacaspase 8, MCP2e, metacaspase 2e 0.298 -0.017
56 259991_at AT1G68040 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.297 0.020
57 246387_at AT1G77400 unknown 0.297 -0.047
58 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.296 0.022
59 248886_at AT5G46110 APE2, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, TPT, triose-phosphate ⁄ phosphate translocator -0.523 0.045
60 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] -0.366 0.036
61 255250_at AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 -0.345 0.016
62 261247_at AT1G20070 unknown -0.282 0.088
63 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 -0.268 0.016
64 253738_at AT4G28750 PSAE-1, PSA E1 KNOCKOUT -0.246 0.035
65 247899_at AT5G57345 unknown -0.240 0.010
66 265471_at AT2G37130 [Peroxidase superfamily protein] -0.238 0.009
67 245044_at AT2G26500 [cytochrome b6f complex subunit (petM), putative] -0.230 0.018
68 248273_at AT5G53500 [Transducin/WD40 repeat-like superfamily protein] -0.225 0.061
69 245277_at AT4G15550 IAGLU, indole-3-acetate beta-D-glucosyltransferase -0.221 -0.044
70 245126_at AT2G47460 ATMYB12, MYB DOMAIN PROTEIN 12, MYB12, myb domain protein 12, PFG1, PRODUCTION OF FLAVONOL GLYCOSIDES 1 -0.217 0.077
71 246200_at AT4G37240 unknown -0.211 0.052
72 265149_at AT1G51400 [Photosystem II 5 kD protein] -0.203 0.035
73 259840_at AT1G52230 PSAH-2, PHOTOSYSTEM I SUBUNIT H-2, PSAH2, photosystem I subunit H2, PSI-H -0.203 0.001
74 253515_at AT4G31320 SAUR37, SMALL AUXIN UPREGULATED RNA 37 -0.199 -0.073
75 265033_at AT1G61520 LHCA3, photosystem I light harvesting complex gene 3 -0.195 -0.045
76 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.192 0.010
77 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.190 -0.037
78 265287_at AT2G20260 PSAE-2, photosystem I subunit E-2 -0.189 0.017
79 263382_at AT2G40230 [HXXXD-type acyl-transferase family protein] -0.187 0.020
80 261221_at AT1G19960 unknown -0.182 0.097
81 263069_at AT2G17590 [Cysteine/Histidine-rich C1 domain family protein] -0.182 0.050
82 261821_at AT1G11530 ATCXXS1, C-terminal cysteine residue is changed to a serine 1, CXXS1, C-terminal cysteine residue is changed to a serine 1 -0.182 0.035
83 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 -0.179 -0.068
84 262557_at AT1G31330 PSAF, photosystem I subunit F -0.175 -0.019
85 254384_at AT4G21870 [HSP20-like chaperones superfamily protein] -0.175 0.025
86 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] -0.174 0.024
87 263283_at AT2G36090 [F-box family protein] -0.174 0.022
88 254970_at AT4G10340 LHCB5, light harvesting complex of photosystem II 5 -0.170 -0.034
89 257922_at AT3G23150 ETR2, ethylene response 2 -0.169 0.008
90 260784_at AT1G06180 ATMYB13, myb domain protein 13, ATMYBLFGN, MYB13, myb domain protein 13 -0.169 0.067
91 248820_at AT5G47060 unknown -0.162 0.127
92 266291_at AT2G29320 [NAD(P)-binding Rossmann-fold superfamily protein] -0.162 0.027
93 246935_at AT5G25350 EBF2, EIN3-binding F box protein 2 -0.161 -0.029
94 246911_at AT5G25810 tny, TINY -0.161 0.001
95 265333_at AT2G18350 AtHB24, homeobox protein 24, HB24, homeobox protein 24, ZHD6, ZINC FINGER HOMEODOMAIN 6 -0.160 0.101
96 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] -0.151 -0.001
97 259831_at AT1G69600 ATHB29, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, ZFHD1, zinc finger homeodomain 1, ZHD11, ZINC FINGER HOMEODOMAIN 11 -0.150 -0.051
98 266369_at AT2G41370 BOP2, BLADE ON PETIOLE2 -0.143 0.068
99 252179_at AT3G50760 GATL2, galacturonosyltransferase-like 2 -0.141 0.057
100 249094_at AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 -0.140 0.039
101 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.137 -0.058
102 264696_at AT1G70230 AXY4, ALTERED XYLOGLUCAN 4, TBL27, TRICHOME BIREFRINGENCE-LIKE 27 -0.135 0.070
103 261948_at AT1G64680 unknown -0.135 0.066
104 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 -0.134 -0.019
105 259491_at AT1G15820 CP24, LHCB6, light harvesting complex photosystem II subunit 6 -0.133 -0.023
106 262916_at AT1G59700 ATGSTU16, glutathione S-transferase TAU 16, GSTU16, glutathione S-transferase TAU 16 -0.130 0.062
107 255812_at AT4G10310 ATHKT1, HKT1, high-affinity K+ transporter 1, HKT1;1 -0.129 -0.043
108 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.128 0.048
109 262632_at AT1G06680 OE23, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, OEE2, OXYGEN-EVOLVING ENHANCER PROTEIN 2, PSBP-1, photosystem II subunit P-1, PSII-P, PHOTOSYSTEM II SUBUNIT P -0.127 -0.012
110 255942_at AT1G22360 AtUGT85A2, UDP-glucosyl transferase 85A2, UGT85A2, UDP-glucosyl transferase 85A2 -0.127 -0.074
111 261769_at AT1G76100 PETE1, plastocyanin 1 -0.127 0.106
112 252430_at AT3G47470 CAB4, LHCA4, light-harvesting chlorophyll-protein complex I subunit A4 -0.125 -0.023
113 245628_at AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 -0.125 0.050
114 265740_at AT2G01150 RHA2B, RING-H2 finger protein 2B -0.125 0.077
115 257593_at AT3G24840 [Sec14p-like phosphatidylinositol transfer family protein] -0.123 0.006