4.0:Information of module
pif3 Dark 1h
In comparison with Red/FR Light45min help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 4.535e-11
GO:0019684 photosynthesis, light reaction BP 9.547e-11
GO:0035303 regulation of dephosphorylation BP 1.768e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.942e-07
GO:0051716 cellular response to stimulus BP 4.396e-07
GO:0032870 cellular response to hormone stimulus BP 1.995e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pif3 Dark 1h		 Log2 signal ratio
Red/FR Light45min
1 258897_at AT3G05730 [LOCATED IN: endomembrane system] 0.365 -0.004
2 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.349 -0.025
3 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] 0.342 -0.080
4 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 0.220 -0.020
5 255652_at AT4G00950 MEE47, maternal effect embryo arrest 47 0.172 0.024
6 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] 0.170 -0.012
7 260933_at AT1G02470 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.169 -0.025
8 248028_at AT5G55620 unknown 0.169 -0.057
9 251814_at AT3G54890 LHCA1, photosystem I light harvesting complex gene 1 0.164 -0.069
10 246487_at AT5G16030 unknown 0.156 -0.038
11 258765_at AT3G10710 RHS12, root hair specific 12 0.154 -0.033
12 264124_at AT1G79360 ATOCT2, organic cation/carnitine transporter 2, OCT2, ORGANIC CATION TRANSPORTER 2, OCT2, organic cation/carnitine transporter 2 0.151 -0.022
13 248684_at AT5G48485 DIR1, DEFECTIVE IN INDUCED RESISTANCE 1 0.145 -0.074
14 253802_at AT4G28180 unknown 0.129 -0.000
15 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 0.127 -0.103
16 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 0.125 -0.026
17 263668_at AT1G04350 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.124 -0.036
18 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 0.124 -0.030
19 265539_at AT2G15830 unknown 0.123 -0.038
20 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 0.122 -0.027
21 266800_at AT2G22880 [VQ motif-containing protein] 0.121 -0.020
22 248151_at AT5G54270 LHCB3, light-harvesting chlorophyll B-binding protein 3, LHCB3*1 0.120 0.009
23 247800_at AT5G58570 unknown 0.119 0.053
24 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 0.119 0.006
25 254001_at AT4G26260 MIOX4, myo-inositol oxygenase 4 0.119 -0.026
26 263120_at AT1G78490 CYP708A3, cytochrome P450, family 708, subfamily A, polypeptide 3 0.117 -0.004
27 246373_at AT1G51860 [Leucine-rich repeat protein kinase family protein] 0.113 -0.034
28 259161_at AT3G01500 ATBCA1, BETA CARBONIC ANHYDRASE 1, ATSABP3, ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, CA1, carbonic anhydrase 1, SABP3, SALICYLIC ACID-BINDING PROTEIN 3 0.112 -0.026
29 258490_at AT3G02670 [Glycine-rich protein family] 0.111 -0.021
30 251827_at AT3G55120 A11, AtCHI, CFI, CHALCONE FLAVANONE ISOMERASE, CHI, chalcone isomerase, TT5, TRANSPARENT TESTA 5 0.106 -0.001
31 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.105 0.012
32 246888_at AT5G26270 unknown 0.104 0.014
33 255248_at AT4G05180 PSBQ, PHOTOSYSTEM II SUBUNIT Q, PSBQ-2, photosystem II subunit Q-2, PSII-Q 0.104 0.002
34 263553_at AT2G16430 ATPAP10, PAP10, purple acid phosphatase 10 0.104 -0.024
35 256599_at AT3G14760 unknown 0.097 0.002
36 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.096 -0.065
37 254293_at AT4G23060 IQD22, IQ-domain 22 0.095 -0.014
38 245947_at AT5G19530 ACL5, ACAULIS 5 0.094 0.014
39 260605_at AT2G43780 unknown 0.091 0.030
40 249055_at AT5G44460 CML43, calmodulin like 43 0.091 0.011
41 261807_at AT1G30515 unknown 0.088 -0.006
42 248128_at AT5G54770 THI1, THI4, THIAMINE4, TZ, THIAZOLE REQUIRING 0.088 -0.024
43 256881_at AT3G26410 AtTRM11, TRM11, tRNA modification 11 0.088 0.015
44 256894_at AT3G21870 CYCP2;1, cyclin p2;1 0.086 -0.026
45 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like 0.086 -0.032
46 260368_at AT1G69700 ATHVA22C, HVA22 homologue C, HVA22C, HVA22 homologue C 0.084 -0.019
47 262437_at AT1G47465 [gypsy-like retrotransposon family (Athila), has a 9.7e-17 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 0.083 0.007
48 261084_at AT1G07440 [NAD(P)-binding Rossmann-fold superfamily protein] 0.083 -0.013
49 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 0.083 -0.057
50 264510_at AT1G09530 PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, phytochrome interacting factor 3, POC1, PHOTOCURRENT 1 -0.695 0.021
51 254095_at AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 -0.294 -0.008
52 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 -0.264 0.002
53 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.226 0.038
54 264494_at AT1G27461 unknown -0.150 0.053
55 262185_at AT1G77950 AGL67, AGAMOUS-like 67 -0.147 -0.032
56 250951_at AT5G03550 unknown -0.146 0.015
57 258240_at AT3G27660 OLE3, OLEOSIN 3, OLEO4, oleosin 4 -0.145 0.038
58 251743_at AT3G55890 [Yippee family putative zinc-binding protein] -0.145 0.058
59 258327_at AT3G22640 PAP85 -0.143 -0.015
60 266688_at AT2G19660 [Cysteine/Histidine-rich C1 domain family protein] -0.141 0.004
61 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 -0.139 0.014
62 265279_at AT2G28460 [Cysteine/Histidine-rich C1 domain family protein] -0.137 0.066
63 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 -0.134 -0.076
64 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 -0.132 0.007
65 257697_at AT3G12700 NANA, NANA -0.130 -0.001
66 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 -0.126 0.005
67 267160_at AT2G37670 [Transducin/WD40 repeat-like superfamily protein] -0.124 0.040
68 252333_at AT3G48830 [polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein] -0.121 0.044
69 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 -0.121 -0.045
70 265255_at AT2G28420 GLYI8, glyoxylase I 8 -0.121 0.003
71 267218_at AT2G02515 unknown -0.121 0.001
72 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 -0.118 0.006
73 251646_at AT3G57780 unknown -0.113 0.014
74 248096_at AT5G55240 ATPXG2, ARABIDOPSIS THALIANA PEROXYGENASE 2 -0.113 -0.026
75 249937_at AT5G22470 [NAD+ ADP-ribosyltransferases] -0.111 0.028
76 260562_at AT2G43850 [Integrin-linked protein kinase family] -0.110 -0.008
77 245970_at AT5G20710 BGAL7, beta-galactosidase 7 -0.110 0.007
78 259167_at AT3G01570 [Oleosin family protein] -0.106 -0.011
79 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 -0.106 -0.013
80 249619_at AT5G37500 GORK, gated outwardly-rectifying K+ channel -0.105 0.020
81 251143_at AT5G01220 SQD2, sulfoquinovosyldiacylglycerol 2 -0.105 0.001
82 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.096 -0.014
83 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.095 0.014
84 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] -0.094 0.022
85 252222_at AT3G49845 WIH3, WINDHOSE 3 -0.093 -0.020
86 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC -0.093 0.003
87 262485_at AT1G21730 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.092 0.054
88 255432_at AT4G03330 ATSYP123, SYP123, syntaxin of plants 123 -0.092 0.016
89 263104_at AT2G05120 [Nucleoporin, Nup133/Nup155-like] -0.092 0.002
90 252395_at AT3G47950 AHA4, H(+)-ATPase 4, HA4, H(+)-ATPase 4 -0.091 -0.019
91 254027_at AT4G25835 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.090 0.073
92 253458_at AT4G32070 Phox4, Phox4 -0.089 -0.011
93 263956_at AT2G35940 BLH1, BEL1-like homeodomain 1, EDA29, embryo sac development arrest 29 -0.089 0.001
94 249009_at AT5G44610 MAP18, microtubule-associated protein 18, PCAP2, PLASMA MEMBRANE ASSOCIATED CA2+-BINDING PROTEIN-2 -0.089 0.000
95 254292_at AT4G23030 [MATE efflux family protein] -0.087 0.002
96 254431_at AT4G20840 [FAD-binding Berberine family protein] -0.087 -0.021
97 262255_at AT1G53790 [F-box and associated interaction domains-containing protein] -0.087 -0.012