4.0:Information of module
ALC Toc1 light-light Mock
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0080129 proteasome core complex assembly BP 8.529e-08
GO:0006090 pyruvate metabolic process BP 2.499e-07
GO:0043248 proteasome assembly BP 1.067e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006950 response to stress BP 2.723e-08
GO:0001666 response to hypoxia BP 3.867e-07
GO:0006952 defense response BP 3.994e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ALC Toc1 light-light Mock		 Log2 signal ratio
Leafminer damaged seedlings
1 245799_at AT1G45616 AtRLP6, receptor like protein 6, RLP6, receptor like protein 6 0.480 -0.011
2 249773_at AT5G24140 SQP2, squalene monooxygenase 2 0.459 0.009
3 264041_at AT2G03710 AGL3, AGAMOUS-like 3, SEP4, SEPALLATA 4 0.313 -0.005
4 252659_at AT3G44430 unknown 0.278 -0.076
5 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 0.275 0.490
6 257635_at AT3G26280 CYP71B4, cytochrome P450, family 71, subfamily B, polypeptide 4 0.269 0.180
7 246393_at AT1G58150 unknown 0.259 -0.200
8 252160_at AT3G50570 [hydroxyproline-rich glycoprotein family protein] 0.256 -0.258
9 257827_at AT3G26630 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.237 -0.225
10 259637_at AT1G52260 ATPDI3, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, ATPDIL1-5, PDI-like 1-5, PDI3, PROTEIN DISULFIDE ISOMERASE 3, PDIL1-5, PDI-like 1-5 0.234 -0.069
11 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 0.234 -0.079
12 248079_at AT5G55790 unknown 0.228 -0.024
13 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] 0.217 -0.543
14 261248_at AT1G20030 [Pathogenesis-related thaumatin superfamily protein] 0.216 0.709
15 267428_at AT2G34840 [Coatomer epsilon subunit] 0.215 0.227
16 252444_at AT3G46980 PHT4;3, phosphate transporter 4;3 0.211 -0.068
17 262206_at AT2G01090 [Ubiquinol-cytochrome C reductase hinge protein] 0.210 -0.020
18 245079_at AT2G23330 [copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] 0.207 0.124
19 265302_at AT2G13970 [Mutator-like transposase family, has a 4.1e-39 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.207 -0.055
20 258027_at AT3G19515 unknown 0.207 -0.197
21 252167_at AT3G50560 [NAD(P)-binding Rossmann-fold superfamily protein] 0.200 -0.566
22 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] 0.200 0.048
23 266332_at AT2G32415 [Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain] 0.196 -0.066
24 247988_at AT5G56910 [Proteinase inhibitor I25, cystatin, conserved region] 0.193 0.017
25 259529_at AT1G12400 [Nucleotide excision repair, TFIIH, subunit TTDA] 0.192 0.005
26 256073_at AT1G18100 E12A11, MFT, MOTHER OF FT AND TFL1 0.190 0.003
27 266117_at AT2G02170 [Remorin family protein] 0.188 -0.225
28 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 0.187 -0.295
29 256024_at AT1G58340 BCD1, BUSH-AND-CHLOROTIC-DWARF 1, ZF14, ZRZ, ZRIZI 0.183 0.570
30 254585_at AT4G19500 [nucleoside-triphosphatases] 0.183 -0.215
31 249247_at AT5G42310 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.182 -0.256
32 257741_at AT3G27340 unknown 0.181 -0.064
33 266592_at AT2G46210 AtSLD2, SLD2, sphingoid LCB desaturase 2 0.180 -0.166
34 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.180 -0.042
35 250537_at AT5G08565 [Transcription initiation Spt4-like protein] 0.180 0.200
36 256025_at AT1G58370 ATXYN1, ARABIDOPSIS THALIANA XYLANASE 1, RXF12 0.179 -0.225
37 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 0.178 0.894
38 263873_at AT2G21860 [violaxanthin de-epoxidase-related] 0.176 -0.181
39 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 0.174 0.103
40 261803_at AT1G30500 NF-YA7, nuclear factor Y, subunit A7 0.173 -0.203
41 252918_at AT4G38980 unknown 0.173 0.033
42 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.173 0.259
43 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 0.170 -0.420
44 260312_at AT1G63880 [Disease resistance protein (TIR-NBS-LRR class) family] 0.168 0.146
45 252574_at AT3G45430 LecRK-I.5, L-type lectin receptor kinase I.5 0.167 -0.119
46 264978_at AT1G27120 [Galactosyltransferase family protein] 0.165 -0.653
47 249838_at AT5G23460 unknown 0.165 0.148
48 256211_at AT1G50960 ATGA2OX7, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, GA2OX7, gibberellin 2-oxidase 7 0.165 -0.015
49 254998_at AT4G09760 [Protein kinase superfamily protein] 0.164 0.086
50 263840_at AT2G36885 unknown 0.164 -0.426
51 254608_at AT4G18910 ATNLM2, NOD26-LIKE INTRINSIC PROTEIN 2, NIP1;2, NOD26-like intrinsic protein 1;2, NLM2, NOD26-LIKE INTRINSIC PROTEIN 2 0.163 0.197
52 264449_at AT1G27460 NPGR1, no pollen germination related 1 0.163 -0.292
53 254774_at AT4G13440 [Calcium-binding EF-hand family protein] 0.160 -0.080
54 245360_at AT4G16330 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.160 0.052
55 262083_at AT1G56100 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.160 -0.018
56 265297_at AT2G14080 [Disease resistance protein (TIR-NBS-LRR class) family] 0.159 0.087
57 249978_at AT5G18850 unknown 0.159 -0.038
58 265102_at AT1G30870 [Peroxidase superfamily protein] 0.159 0.002
59 266900_at AT2G34610 unknown 0.158 0.009
60 262561_at AT1G34340 [alpha/beta-Hydrolases superfamily protein] 0.157 0.144
61 262908_at AT1G59900 AT-E1 ALPHA, pyruvate dehydrogenase complex E1 alpha subunit, E1 ALPHA, pyruvate dehydrogenase complex E1 alpha subunit 0.156 0.004
62 266240_at AT2G29580 MAC5B, MOS4-associated complex subunit 5B 0.155 0.078
63 267505_at AT2G45560 CYP76C1, cytochrome P450, family 76, subfamily C, polypeptide 1 0.155 -0.131
64 247419_at AT5G63080 JMJ20, Jumonji domain-containing protein 20 0.154 -0.026
65 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 0.154 -0.244
66 247124_at AT5G66060 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.153 0.061
67 255702_at AT4G00230 XSP1, xylem serine peptidase 1 0.153 -0.107
68 251941_at AT3G53470 unknown 0.152 -0.142
69 265615_at AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.151 0.196
70 254624_at AT4G18580 unknown 0.151 0.206
71 255710_at AT4G00030 [Plastid-lipid associated protein PAP / fibrillin family protein] 0.151 -0.072
72 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.150 0.071
73 252314_at AT3G49400 [Transducin/WD40 repeat-like superfamily protein] 0.149 -0.022
74 250889_at AT5G04500 [glycosyltransferase family protein 47] 0.149 -0.014
75 254481_at AT4G20480 [Putative endonuclease or glycosyl hydrolase] 0.148 0.034
76 256114_at AT1G16850 unknown 0.148 0.455
77 264658_at AT1G09910 [Rhamnogalacturonate lyase family protein] 0.147 0.043
78 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.147 0.402
79 263875_at AT2G21970 SEP2, stress enhanced protein 2 0.146 -0.235
80 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 0.145 -0.678
81 245381_at AT4G17785 MYB39, myb domain protein 39 0.144 -0.022
82 245318_at AT4G16980 [arabinogalactan-protein family] 0.144 -0.224
83 248336_at AT5G52420 unknown 0.144 -0.208
84 264627_at AT1G65520 ATECI1, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1, ECHIC, ENOYL-COA HYDRATASE/ISOMERASE C, ECI1, delta(3), delta(2)-enoyl CoA isomerase 1, PEC11 0.143 0.178
85 257067_at AT3G18270 pseudogene 0.143 0.006
86 245386_at AT4G14010 RALFL32, ralf-like 32 0.143 -0.018
87 249587_at AT5G37860 [Heavy metal transport/detoxification superfamily protein ] 0.143 0.079
88 253409_at AT4G32960 unknown 0.142 -0.007
89 263796_at AT2G24540 AFR, ATTENUATED FAR-RED RESPONSE 0.142 -0.176
90 260502_at AT1G47270 AtTLP6, tubby like protein 6, TLP6, tubby like protein 6 0.141 -0.125
91 262309_at AT1G70820 [phosphoglucomutase, putative / glucose phosphomutase, putative] 0.140 0.698
92 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.140 1.055
93 254755_at AT4G13220 unknown 0.138 -0.088
94 252956_at AT4G38580 ATFP6, farnesylated protein 6, FP6, farnesylated protein 6, HIPP26, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 0.138 0.180
95 258662_at AT3G02900 unknown 0.138 -0.028
96 248810_at AT5G47280 ADR1-L3, ADR1-like 3 -0.887 -0.036
97 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 -0.846 -0.190
98 261367_at AT1G53080 [Legume lectin family protein] -0.783 0.048
99 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.764 0.123
100 246406_at AT1G57650 [ATP binding] -0.760 0.114
101 252345_at AT3G48640 unknown -0.666 0.420
102 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 -0.657 -0.077
103 252346_at AT3G48650 [pseudogene] -0.655 0.612
104 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] -0.618 0.533
105 256878_at AT3G26460 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.611 0.013
106 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 -0.569 0.212
107 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.555 -0.016
108 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.550 1.094
109 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] -0.550 -0.105
110 249955_at AT5G18840 [Major facilitator superfamily protein] -0.527 -0.053
111 260396_at AT1G69720 HO3, heme oxygenase 3 -0.520 0.125
112 255807_at AT4G10270 [Wound-responsive family protein] -0.507 0.039
113 254566_at AT4G19240 unknown -0.494 0.009
114 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.484 0.055
115 248736_at AT5G48110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.479 0.039
116 250135_at AT5G15360 unknown -0.474 -0.011
117 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.474 0.021
118 255621_at AT4G01390 [TRAF-like family protein] -0.462 -0.005
119 266784_at AT2G28960 [Leucine-rich repeat protein kinase family protein] -0.447 0.013
120 247024_at AT5G66985 unknown -0.435 -0.016
121 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 -0.431 -0.015
122 249970_at AT5G19100 [Eukaryotic aspartyl protease family protein] -0.416 0.310
123 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.415 0.860
124 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] -0.414 0.002
125 249384_at AT5G39890 unknown -0.401 0.020
126 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.392 -0.584
127 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 -0.382 0.089
128 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.381 -0.049
129 257417_at AT1G10110 [F-box family protein] -0.375 -0.054
130 252073_at AT3G51750 unknown -0.372 -0.474
131 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 -0.364 0.300
132 256145_at AT1G48750 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.345 -0.077
133 261567_at AT1G33055 unknown -0.342 0.015
134 248486_at AT5G51060 ATRBOHC, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, RBOHC, RESPIRATORY BURST OXIDASE HOMOLOG C, RHD2, ROOT HAIR DEFECTIVE 2 -0.342 0.135
135 250152_at AT5G15120 unknown -0.338 -0.041
136 261717_at AT1G18400 BEE1, BR enhanced expression 1 -0.338 -0.227
137 245226_at AT3G29970 [B12D protein] -0.325 0.029
138 259548_at AT1G35260 MLP165, MLP-like protein 165 -0.313 -0.064
139 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] -0.309 0.012
140 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 -0.306 0.293
141 255414_at AT4G03156 [small GTPase-related] -0.304 -0.028
142 253532_at AT4G31570 unknown -0.301 -0.138
143 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] -0.300 0.672
144 251746_at AT3G56060 [Glucose-methanol-choline (GMC) oxidoreductase family protein] -0.298 -0.177
145 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.288 0.147
146 245089_at AT2G45290 TKL2, transketolase 2 -0.284 0.509
147 254931_at AT4G11460 CRK30, cysteine-rich RLK (RECEPTOR-like protein kinase) 30 -0.276 -0.270
148 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] -0.276 -0.132
149 261782_at AT1G76110 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] -0.265 -0.348
150 266976_at AT2G39410 [alpha/beta-Hydrolases superfamily protein] -0.260 0.039
151 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 -0.258 -0.076
152 252136_at AT3G50770 CML41, calmodulin-like 41 -0.257 0.239
153 260684_at AT1G17590 NF-YA8, nuclear factor Y, subunit A8 -0.253 0.037
154 255549_at AT4G01950 ATGPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3, GPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3 -0.253 -0.065
155 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 -0.248 0.876
156 254200_at AT4G24110 unknown -0.243 0.395
157 246888_at AT5G26270 unknown -0.242 0.273
158 247912_at AT5G57480 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.239 0.317
159 245171_at AT2G47560 [RING/U-box superfamily protein] -0.237 -0.149
160 249918_at AT5G19240 [Glycoprotein membrane precursor GPI-anchored] -0.237 0.162
161 245032_at AT2G26630 [transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain] -0.230 -0.059
162 258529_at AT3G06740 GATA15, GATA transcription factor 15 -0.229 -0.258
163 265334_at AT2G18370 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.224 -0.053
164 266711_at AT2G46740 AtGulLO5, GulLO5, L -gulono-1,4-lactone ( L -GulL) oxidase 5 -0.224 -0.013
165 250487_at AT5G09690 ATMGT7, ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, MGT7, magnesium transporter 7, MRS2-7 -0.223 -0.001
166 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] -0.221 0.027
167 247116_at AT5G65970 ATMLO10, MILDEW RESISTANCE LOCUS O 10, MLO10, MILDEW RESISTANCE LOCUS O 10 -0.220 -0.061
168 259040_at AT3G09270 ATGSTU8, glutathione S-transferase TAU 8, GSTU8, glutathione S-transferase TAU 8 -0.220 0.778
169 254901_at AT4G11530 CRK34, cysteine-rich RLK (RECEPTOR-like protein kinase) 34 -0.218 0.073
170 252502_at AT3G46900 COPT2, copper transporter 2 -0.218 -0.222
171 264104_at AT2G13750 [CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.218 -0.016
172 253689_at AT4G29770 unknown -0.216 -0.047
173 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 -0.214 0.916
174 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.211 0.509
175 259441_at AT1G02300 [Cysteine proteinases superfamily protein] -0.211 0.091
176 251160_at AT3G63240 [DNAse I-like superfamily protein] -0.210 -0.250
177 246422_at AT5G17060 ARFB1B, ADP-ribosylation factor B1B, ATARFB1B, ADP-ribosylation factor B1B -0.206 0.043
178 263474_at AT2G31725 unknown -0.199 0.029
179 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 -0.198 0.210
180 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] -0.196 0.639
181 259661_at AT1G55265 unknown -0.195 0.044
182 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 -0.194 -0.070
183 265327_at AT2G18210 unknown -0.193 0.117
184 262461_at AT1G50360 ATVIIIA, MYOSIN VIII A, VIIIA -0.193 -0.000
185 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] -0.187 0.182
186 261429_at AT1G18860 ATWRKY61, WRKY DNA-BINDING PROTEIN 61, WRKY61, WRKY DNA-binding protein 61 -0.185 0.216
187 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 -0.185 -0.103
188 257817_at AT3G25150 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] -0.184 -0.031
189 257673_at AT3G20370 [TRAF-like family protein] -0.183 0.664