4.0:Information of module
Methyl Violet 0.5 uM
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 4.001e-03
GO:0006760 folic acid-containing compound metabolic... BP 4.831e-03
GO:0042558 pteridine-containing compound metabolic ... BP 4.831e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019252 starch biosynthetic process BP 5.220e-03
GO:0006569 tryptophan catabolic process BP 9.158e-03
GO:0046218 indolalkylamine catabolic process BP 9.158e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Methyl Violet 0.5 uM		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.227 0.890
2 260267_at AT1G68530 CER6, ECERIFERUM 6, CUT1, CUTICULAR 1, G2, KCS6, 3-ketoacyl-CoA synthase 6, POP1, POLLEN-PISTIL INCOMPATIBILITY 1 0.207 -0.125
3 245912_at AT5G19600 SULTR3;5, sulfate transporter 3;5 0.198 -0.254
4 263950_at AT2G36020 HVA22J, HVA22-like protein J 0.191 -0.137
5 259458_at AT1G44085 [glycine-rich protein] 0.189 -0.984
6 258302_at AT3G30610 unknown 0.188 0.135
7 255717_at AT4G00350 [MATE efflux family protein] 0.182 -1.153
8 256870_at AT3G26300 CYP71B34, cytochrome P450, family 71, subfamily B, polypeptide 34 0.180 0.813
9 255057_at AT4G09840 unknown 0.174 -0.727
10 264714_at AT1G69990 [Leucine-rich repeat protein kinase family protein] 0.171 -0.739
11 262256_at AT1G53810 [copia-like retrotransposon family, has a 8.0e-248 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] 0.168 -0.907
12 249484_at AT5G38970 ATBR6OX, BR6OX, BRASSINOSTEROID-6-OXIDASE, BR6OX1, brassinosteroid-6-oxidase 1, CYP85A1 0.166 -0.096
13 261162_at AT1G34440 unknown 0.164 -0.509
14 252316_at AT3G48700 ATCXE13, carboxyesterase 13, CXE13, carboxyesterase 13 0.162 0.383
15 249811_at AT5G23760 [Copper transport protein family] 0.161 1.253
16 254264_at AT4G23510 [Disease resistance protein (TIR-NBS-LRR class) family] 0.160 -0.218
17 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] 0.159 -0.699
18 264782_at AT1G08810 AtMYB60, myb domain protein 60, MYB60, myb domain protein 60 0.157 -0.898
19 266838_at AT2G25980 [Mannose-binding lectin superfamily protein] 0.155 1.467
20 248486_at AT5G51060 ATRBOHC, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, RBOHC, RESPIRATORY BURST OXIDASE HOMOLOG C, RHD2, ROOT HAIR DEFECTIVE 2 0.155 0.904
21 252770_at AT3G42860 [zinc knuckle (CCHC-type) family protein] -0.186 0.611
22 252240_at AT3G50010 [Cysteine/Histidine-rich C1 domain family protein] -0.181 -0.849
23 255175_at AT4G07960 ATCSLC12, Cellulose-synthase-like C12, CSLC12, CELLULOSE-SYNTHASE LIKE C12, CSLC12, Cellulose-synthase-like C12 -0.178 -0.442
24 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -0.166 0.617
25 249977_at AT5G18820 Cpn60alpha2, chaperonin-60alpha2, EMB3007, embryo defective 3007 -0.156 -0.224
26 259711_at AT1G77570 AtREN1, REN1, restricted to nucleolus 1 -0.147 0.368
27 251126_at AT5G01070 [RING/FYVE/PHD zinc finger superfamily protein] -0.146 -1.048
28 247774_at AT5G58660 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.143 -0.151
29 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 -0.143 1.130
30 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.140 -0.041
31 266508_at AT2G47920 NET3C, Networked 3C -0.138 0.163
32 245635_at AT1G25250 AtIDD16, indeterminate(ID)-domain 16, IDD16, indeterminate(ID)-domain 16 -0.133 -0.533
33 265780_at AT2G07380 [Mutator-like transposase family, has a 5.0e-62 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)] -0.127 -0.871
34 255888_at AT1G20300 [Pentatricopeptide repeat (PPR) superfamily protein] -0.126 1.043
35 246987_at AT5G67300 ATMYB44, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, ATMYBR1, MYB44, MYBR1, myb domain protein r1 -0.123 0.973
36 258213_at AT3G17950 unknown -0.116 -0.854
37 258229_at AT3G27700 [zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein] -0.112 0.093
38 260010_at AT1G68020 ATTPS6, TPS6, TREHALOSE -6-PHOSPHATASE SYNTHASE S6 -0.112 0.207
39 264456_at AT1G10390 [Nucleoporin autopeptidase] -0.106 0.739