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Dark 4 h pls RedLight 1min
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 Dark 4 h pls RedLight 1min Col-0 1 min. red light pulse
followed by 4 h of
darkness / seedlings		 Dark 4 h Light treatments 1.00  
1.00  
2 Dark 4 h pls UV-A 5 min Col-0 5 min. UV-A light pulse
followed by 4 h of
darkness / seedlings		 Dark 4 h Light treatments 0.95  
0.89  
3 Dark 4 h pls UV-AB 5min Col-0 5 min. UV-A/B light
pulse followed by 4 h
of darkness / seedlings		 Dark 4 h Light treatments 0.87  
0.72  
4 Mature roots Col-0 no treatment / roots Control for tissue data Developmental series; organs / tissues at different ages -0.75  
-0.49  
5 Rosette leaf No12 gl1-T no treatment / rosette
leaf #12		 Control for tissue data Developmental series; organs / tissues at different ages 0.68  
0.25  
6 Mature pollen Col-0 no treatment / mature
pollen		 Control for tissue data Developmental series; organs / tissues at different ages -0.68  
-0.21  
7 Seeds stage8 w/o siliques Col-0 no treatment / seeds
stage 8, w/o siliques
(long days)		 Control for tissue data Developmental series; organs / tissues at different ages -0.68  
-0.29  
8 Dark 40min pls UV-AB 5min Col-0 5 min. UV-A/B light
pulse followed by 40
min. of darkness /
seedlings		 Dark 45 min Light treatments 0.61  
0.50  
9 Proximalhalf (leaf7) Col-0 no treatment / leaf 7,
proximal half		 Control for tissue data Developmental series; organs / tissues at different ages 0.60  
0.07  
10 Cotyledons Col-0 no treatment /
cotyledons		 Control for tissue data Developmental series; organs / tissues at different ages 0.59  
0.10  
11 Estradiol4 days Col Estradiol 10 µM /
seedling		 Col GEO bulk -0.59  
-0.46  
12 Norflurazon Col-0 5 µM Norflurazon /
seedling		 Col-0 GEO bulk -0.57  
-0.61  
13 Flowers stage15 Col-0 no treatment / flowers
stage 15		 Control for tissue data Developmental series; organs / tissues at different ages -0.56  
-0.15  
14 Mutant lfy-12(shoot apex) lfy-12 no treatment / shoot
apex, inflorescence
(after bolting)		 Shoot apex inflorescence (after bolting) Developmental series; organs / tissues at different ages 0.55  
0.15  
15 ACC 1 h Col-0 10 µM ACC / seedling Mock 1 h Basic hormone treatment of seedlings -0.53  
-0.07  
16 DC3000 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection -0.53  
-0.16  
17 Stamen stage15 Col-0 no treatment / flowers
stage 15 stamen		 Control for tissue data Developmental series; organs / tissues at different ages -0.53  
-0.18  
18 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments -0.52  
-0.38  
19 Dark 44min pls RedLigh 1min Col-0 1 min. red light pulse
followed by 44 min.
darkness / seedlings		 Dark 45 min Light treatments 0.52  
0.59  
20 Dark 40 min pls UV-A 5 min Col-0 5 min. UV-A light pulse
followed by 40 min. of
darkness / seedlings		 Dark 45 min Light treatments 0.51  
0.53  
21 Petiol (leaf7) Col-0 no treatment / leaf 7,
petiole		 Control for tissue data Developmental series; organs / tissues at different ages 0.51  
0.08  
22 Pedicels stage15 Col-0 no treatment / flowers
stage 15, pedicels		 Control for tissue data Developmental series; organs / tissues at different ages 0.50  
0.04  
23 Red Light 1h Col-0 Red Light / seedling Wild type(Dark) GEO bulk 0.44  
0.54  
24 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments -0.39  
-0.51  
25 Red Light 4 h Col-0 continuous Red Light /
seedlings		 White Light 4 h Light treatments -0.29  
-0.53  
26 Brz220 12 h Col-0 10 µM BRZ220 /
seedling		 Mock 12 h Effect of brassinosteroid inhibitors on seedlings -0.26  
-0.51