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UV Stress 24 h (shoot)
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 UV Stress 24 h (shoot) Col-0 UV-B stress (15 min 1.8
W/m2 Philips TL40W/12;
thereafter recovery) /
shoots		 Stress mock 24 h (shoot) Stress treatments 1.00  
1.00  
2 Mutant siz1-3 siz1-3 mock / not identified Col-0 GEO bulk 0.78  
0.67  
3 Mutant siz1-3 (Drought) siz1-3 Drought / not
identified		 Col-0 (Drought) GEO bulk 0.77  
0.68  
4 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.74  
0.48  
5 HairpinZ 4 h (leaf) Col-0 infiltrated with 10
µM HrpZ / leaves		 Mock 4 h (leaf) Elicitor treatments 0.73  
0.60  
6 GST NPP1 4 h (leaf) Col-0 infiltrated with 1
µM GST-NPP1 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.73  
0.59  
7 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.72  
0.52  
8 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.70  
0.66  
9 E.orontii Infection 3 day Col-0 E.orontii Infection 3
day / leaves		 Uninfection 3 day Elicitor treatments 0.69  
0.71  
10 Drought Stress 24 h (shoot) Col-0 drought (15 min. dry air
then further incubation
in closed vessel) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.68  
0.54  
11 Rosette leaf No2 Col-0 no treatment / rosette
leaf #4		 Control for tissue data Developmental series; organs / tissues at different ages 0.67  
0.47  
12 Mutant ufo-1(flower) ufo-1 no treatment / flower
stage 12; filamentous
organs in whorls two and
three 		Flowers stage12 Developmental series; organs / tissues at different ages 0.66  
0.45  
13 Distal half (leaf7) Col-0 no treatment / leaf 7,
distal half		 Control for tissue data Developmental series; organs / tissues at different ages 0.65  
0.47  
14 Mutant NahG(leaf) Nahg no treatment / leaves Col-0 (leaf) GEO bulk -0.64  
-0.67  
15 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments 0.63  
0.72  
16 Cauline leaves Col-0 no treatment / cauline
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.63  
0.45  
17 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages 0.63  
0.43  
18 Flower (stage12) Col-0 no treatment / flower
(CAGE, long days)		 Control for tissue data Developmental series; organs / tissues at different ages -0.63  
-0.37  
19 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.62  
0.59  
20 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings 0.61  
0.52  
21 Flagellin 4 h (leaf) Col-0 infiltrated with 1
µM Flg22 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.61  
0.55  
22 Mutant cry1 cry1 Continuous white light /
seedling		 Col-0 GEO bulk -0.61  
-0.14  
23 Seeds stage3 with siliques Col-0 no treatment / siliques,
w/ seeds stage 3 (long
days)		 Control for tissue data Developmental series; organs / tissues at different ages -0.60  
-0.29  
24 Salicylic Acid 3 h Col-0 10µM salicylic acid
/ seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.58  
0.74  
25 Mutant ag-12(flower) ag-12 no treatment / flower
stage 12; no stamens or
carpels 		Flowers stage12 Developmental series; organs / tissues at different ages 0.58  
0.26  
26 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 0.58  
0.35  
27 Mutant ga1-5 ga1-5 no treatment / seedling Ler-1 Comparison of plant hormone related mutant -0.57  
-0.46  
28 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments 0.56  
0.65  
29 Proximalhalf (leaf7) Col-0 no treatment / leaf 7,
proximal half		 Control for tissue data Developmental series; organs / tissues at different ages 0.56  
0.35  
30 Heat Recovery 24 h (shoot) Col-0 heat stress + 3 h
recovery (25˚) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.53  
0.43  
31 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato avrRpm1 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.53  
0.49  
32 Mutant clv3-7(flower) clv3-7 no treatment / flower
stage 12; multi-carpel
gynoeceum; enlarged
meristem; increased
organ number		 Flowers stage12 Developmental series; organs / tissues at different ages -0.53  
-0.34  
33 Mutant tga2_5_6 tga2 5 6 mock / seedling Col-0 GEO bulk 0.53  
0.29  
34 Cold Stress 24 h (shoot) Col-0 cold stress (4˚) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.52  
0.31  
35 Cotyledons Col-0 no treatment /
cotyledons		 Control for tissue data Developmental series; organs / tissues at different ages 0.52  
0.38  
36 Mutant cry1 (High Light) cry1 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk -0.52  
-0.51  
37 Wounding Stress3 h (shoot) Col-0 wounding (punctured with
pins at beginning of
treatment) / shoots		 Stress mock 3 h (shoot) Stress treatments 0.50  
0.08  
38 Norflurazon Col-0 5 µM Norflurazon /
seedling		 Col-0 GEO bulk 0.46  
0.61  
39 Mutant sav3-2 (SH) sav3-2 Low R:FR light /
seedling		 Col-0 (SH) GEO bulk 0.40  
0.61  
40 B.cinerea 18 h infection CS6673 B. cinerea infection /
leaf		 Mock 18 h Botrytis cinerea infection 0.35  
0.68  
41 Genotoxic Stress 3 h (shoot) Col-0 genotoxic stress (1.5
µg/ml bleomycin + 22
µg/ml mitomycin) /
shoots		 Stress mock 3 h (shoot) Stress treatments -0.31  
0.60  
42 Uniconazole 12 h Col-0 10 µM uniconazole /
seedling		 Mock 12 h Effect of GA inhibitors on seedlings 0.30  
0.50  
43 Mutant sav3-2 (WL) sav3-2 Continuous white light /
seedling		 Col-0 (WL) GEO bulk 0.28  
0.71