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P.syringae AvrRpt2 4 h (leaf)
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 1.00  
1.00  
2 P.syringae vir 4 h (leaf) Col-0 P.syringae vir 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.86  
0.71  
3 HairpinZ 4 h (leaf) Col-0 infiltrated with 10
µM HrpZ / leaves		 Mock 4 h (leaf) Elicitor treatments 0.76  
0.69  
4 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.76  
0.51  
5 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments 0.74  
0.75  
6 Flagellin 4 h (leaf) Col-0 infiltrated with 1
µM Flg22 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.74  
0.62  
7 Wounding Stress3 h (shoot) Col-0 wounding (punctured with
pins at beginning of
treatment) / shoots		 Stress mock 3 h (shoot) Stress treatments 0.73  
0.67  
8 GST NPP1 4 h (leaf) Col-0 infiltrated with 1
µM GST-NPP1 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.73  
0.68  
9 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments 0.72  
0.69  
10 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.71  
0.66  
11 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
phaseolicola harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.70  
0.75  
12 Mutant gh3.5-1D (AvrRpt2) gh3.5-1D Pst DC3000(avrRpt2) /
leaves		 Col-0 (AvrRpt2) GEO bulk 0.70  
0.57  
13 Mutant siz1-3 (Drought) siz1-3 Drought / not
identified		 Col-0 (Drought) GEO bulk 0.67  
0.63  
14 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings 0.64  
0.60  
15 ARR22-ox (t-zeatin 3 h) ARR22-ox 20 µM t-zeatin /
seedling		 Col-0 (t-zeatin 3 h) Cytokinin treatment of seedlings 0.64  
0.41  
16 DC3000 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.62  
0.58  
17 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages 0.62  
0.47  
18 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.61  
0.56  
19 Rosette leaf No12 gl1-T no treatment / rosette
leaf #12		 Control for tissue data Developmental series; organs / tissues at different ages -0.61  
-0.20  
20 Salt Stress 24 h (root) Col-0 salt stress (150 mM
NaCl) / roots		 Stress mock 24 h (root) Stress treatments 0.60  
0.41  
21 UV Stress 24 h (shoot) Col-0 UV-B stress (15 min 1.8
W/m2 Philips TL40W/12;
thereafter recovery) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.59  
0.62  
22 OPDA 4 h Col 75 µM OPDA /
seedling		 Col-0 GEO bulk 0.58  
0.30  
23 Uniconazole 12 h Col-0 10 µM uniconazole /
seedling		 Mock 12 h Effect of GA inhibitors on seedlings 0.57  
0.28  
24 Cold Stress 24 h (root) Col-0 cold stress (4˚) /
roots		 Stress mock 24 h (root) Stress treatments 0.57  
0.39  
25 Cycloheximide 3 h Col-0 10 µM CHX /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.55  
0.47  
26 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato avrRpm1 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.55  
0.66  
27 DC3000 hrcC 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 hrcC-
harvested after 2h /
leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.54  
0.48  
28 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 0.54  
0.51  
29 Mutant coi1(leaf) coi1 no treatment / leaves Col-0 (leaf) GEO bulk -0.53  
-0.43  
30 Mutant siz1-3 siz1-3 mock / not identified Col-0 GEO bulk 0.53  
0.61  
31 Methyl Jasmonate 1 h Col-0 10 µM Metyl
Jasmonate / seedling		 Mock 1 h Basic hormone treatment of seedlings 0.52  
0.23  
32 ARR21C-ox ARR21C-ox no treatment / seedling Col-0 ARR21C overexpression 0.52  
0.24  
33 Mutant iaa17-6 iaa17-6 mock / seedling Col GEO bulk 0.52  
0.42  
34 Osmotic Stress 24 h (root) Col-0 osmotic stress (300 mM
mannitol) / roots		 Stress mock 24 h (root) Stress treatments 0.51  
0.27  
35 E.orontii Infection 3 day Col-0 E.orontii Infection 3
day / leaves		 Uninfection 3 day Elicitor treatments 0.40  
0.52  
36 Oxidative Stress 3 h (shoot) Col-0 oxidative stress (10
µM methyl viologen)
/ shoots		 Stress mock 3 h (shoot) Stress treatments -0.37  
-0.52  
37 Salicylic Acid 3 h Col-0 10µM salicylic acid
/ seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.21  
0.60  
38 B.cinerea 18 h infection CS6673 B. cinerea infection /
leaf		 Mock 18 h Botrytis cinerea infection 0.21  
0.66  
39 FarRed Light 45min Col-0 continuous far red light
/ seedlings		 White Light 45min Light treatments 0.14  
-0.65  
40 2,4,6-trichlorophenoxyacetic acid 3 h Col-0 10 µM 2,4,6T /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.08  
0.56  
41 ABA 1 h Col-0 10 µM ABA / seedling Mock 1 h Basic hormone treatment of seedlings 0.07  
0.52