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Salt Stress 24 h (root)
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 Salt Stress 24 h (root) Col-0 salt stress (150 mM
NaCl) / roots		 Stress mock 24 h (root) Stress treatments 1.00  
1.00  
2 Osmotic Stress 24 h (root) Col-0 osmotic stress (300 mM
mannitol) / roots		 Stress mock 24 h (root) Stress treatments 0.78  
0.90  
3 Cold Stress 24 h (root) Col-0 cold stress (4˚) /
roots		 Stress mock 24 h (root) Stress treatments 0.70  
0.74  
4 Cycloheximide 3 h Col-0 10 µM CHX /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.63  
0.73  
5 GST NPP1 4 h (leaf) Col-0 infiltrated with 1
µM GST-NPP1 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.58  
0.60  
6 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.57  
0.66  
7 HairpinZ 4 h (leaf) Col-0 infiltrated with 10
µM HrpZ / leaves		 Mock 4 h (leaf) Elicitor treatments 0.57  
0.60  
8 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages 0.57  
0.59  
9 Mutant siz1-3 (Drought) siz1-3 Drought / not
identified		 Col-0 (Drought) GEO bulk 0.51  
0.44  
10 2,3,5-Triiodobenzoic acid3 h Col-0 10 µM TIBA /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.49  
0.56  
11 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings 0.49  
0.51  
12 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
phaseolicola harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.48  
0.66  
13 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments 0.48  
0.60  
14 ABA 3 h Col-0 10 µM ABA / seedling Mock 3 h Basic hormone treatment of seedlings 0.46  
0.73  
15 Phytoprostane A1 4 h Col 75 µM phytoprostane
A1 / seedling		 Col-0 GEO bulk 0.46  
0.64  
16 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.45  
0.55  
17 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.42  
0.52  
18 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.41  
0.60  
19 Shoot apex transition (before bolting) Col-0 no treatment / shoot
apex, transition (before
bolting)		 Control for tissue data Developmental series; organs / tissues at different ages -0.40  
-0.51  
20 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments 0.40  
0.56  
21 OPDA 4 h Col 75 µM OPDA /
seedling		 Col-0 GEO bulk 0.40  
0.51  
22 UV Stress 24 h (root) Col-0 UV-B stress (15 min 1.8
W/m2 Philips TL40W/12;
thereafter recovery) /
roots		 Stress mock 24 h (root) Stress treatments 0.38  
0.69  
23 Cauline leaves Col-0 no treatment / cauline
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.37  
0.52  
24 Salt Stress 24 h (shoot) Col-0 salt stress (150 mM
NaCl) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.36  
0.58  
25 Selenate (root) WS Selenate 40 µM /
root		 Ws (root) GEO bulk 0.36  
0.62  
26 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato avrRpm1 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.34  
0.59  
27 Mutant gh3.5-1D (AvrRpt2) gh3.5-1D Pst DC3000(avrRpt2) /
leaves		 Col-0 (AvrRpt2) GEO bulk 0.32  
0.51  
28 ABA 0.5 h Col-0 10 µM ABA / seedling Mock 0.5 h Basic hormone treatment of seedlings 0.31  
0.65  
29 Selenate (shoot) WS Selenate 40 µM /
shoot		 Ws (shoot) GEO bulk 0.31  
0.56  
30 Methyl Jasmonate 0.5 h Col-0 10 µM MJ / seedling Mock 0.5 h Basic hormone treatment of seedlings 0.26  
0.67  
31 Methyl Jasmonate 1 h Col-0 10 µM Metyl
Jasmonate / seedling		 Mock 1 h Basic hormone treatment of seedlings 0.26  
0.52  
32 ABA 1 h Col-0 10 µM ABA / seedling Mock 1 h Basic hormone treatment of seedlings 0.23  
0.75  
33 Methyl Jasmonate 3 h Col-0 10 µM Metyl
Jasmonate / seedling		 Mock 3 h Basic hormone treatment of seedlings 0.19  
0.55  
34 -Sulfate 24 h Col-0 0 µM sulfate / root Mock 24 h (1500uM sulfate) Response to sulfate limitation 0.19  
0.67  
35 Mutant coi1(leaf) coi1 no treatment / leaves Col-0 (leaf) GEO bulk -0.19  
-0.50  
36 Mutant iaa17-6 iaa17-6 mock / seedling Col GEO bulk 0.11  
0.51