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AgNO3 3 h
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings 1.00  
1.00  
2 2,3,5-Triiodobenzoic acid3 h Col-0 10 µM TIBA /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.85  
0.84  
3 ARR22-ox (t-zeatin 3 h) ARR22-ox 20 µM t-zeatin /
seedling		 Col-0 (t-zeatin 3 h) Cytokinin treatment of seedlings 0.77  
0.68  
4 Fe starvation 72 h Col Fe starvation / whole
roots		 Control GEO bulk 0.77  
0.58  
5 Cycloheximide 3 h Col-0 10 µM CHX /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.76  
0.73  
6 Salicylic Acid 3 h Col-0 10µM salicylic acid
/ seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.75  
0.60  
7 Mutant axr3-1 axr3-1 mock / seedling Col GEO bulk 0.75  
0.71  
8 HairpinZ 4 h (leaf) Col-0 infiltrated with 10
µM HrpZ / leaves		 Mock 4 h (leaf) Elicitor treatments 0.74  
0.76  
9 GST NPP1 4 h (leaf) Col-0 infiltrated with 1
µM GST-NPP1 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.74  
0.76  
10 Selenate (root) WS Selenate 40 µM /
root		 Ws (root) GEO bulk 0.73  
0.66  
11 Phytoprostane A1 4 h Col 75 µM phytoprostane
A1 / seedling		 Col-0 GEO bulk 0.73  
0.70  
12 2,4,6-trichlorophenoxyacetic acid 3 h Col-0 10 µM 2,4,6T /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.69  
0.78  
13 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.69  
0.81  
14 Mutant iaa17-6 (IAA) iaa17-6 5 µM IAA / seedling Col (IAA) GEO bulk 0.69  
0.36  
15 OPDA 4 h Col 75 µM OPDA /
seedling		 Col-0 GEO bulk 0.69  
0.56  
16 Blue Light 4 h Col-0 continuous Blue Light /
seedlings		 White Light 4 h Light treatments 0.68  
-0.11  
17 PNO8 3 h Col-0 1 µM PNO8 /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.67  
0.79  
18 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
phaseolicola harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.65  
0.80  
19 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments 0.63  
0.75  
20 Mutant arf2 (etiol) arf2 mock / etiol seedling Col (etiol) GEO bulk 0.63  
0.62  
21 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments 0.62  
0.62  
22 Mutant nph4-1_arf19-1 nph4-1 arf19-1 mock / seedling Col GEO bulk 0.62  
0.37  
23 Mutant siz1-3 (Drought) siz1-3 Drought / not
identified		 Col-0 (Drought) GEO bulk 0.62  
0.57  
24 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.61  
0.51  
25 B.cinerea 18 h infection CS6673 B. cinerea infection /
leaf		 Mock 18 h Botrytis cinerea infection 0.61  
0.84  
26 At1g54160 ox At1g54160 ox (NFYA5) no treatment / seedling Col-0 GEO bulk 0.61  
0.26  
27 K starvation (root) ws-2 K starvation / root Ws (root) GEO bulk 0.61  
0.56  
28 Ibuprofen 3 h Col-0 10 µM Ibuprofen /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.60  
0.71  
29 ARR21C-ox ARR21C-ox no treatment / seedling Col-0 ARR21C overexpression 0.60  
0.28  
30 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.60  
0.64  
31 Cold Stress 24 h (root) Col-0 cold stress (4˚) /
roots		 Stress mock 24 h (root) Stress treatments 0.59  
0.37  
32 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.59  
0.46  
33 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato avrRpm1 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.58  
0.70  
34 Flagellin 4 h (leaf) Col-0 infiltrated with 1
µM Flg22 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.58  
0.66  
35 Oxidative Stress 3 h (root) Col-0 oxidative stress (10
µM methyl viologen)
/ roots		 Stress mock 3 h (root) Stress treatments -0.57  
-0.49  
36 Mutant coi1(leaf) coi1 no treatment / leaves Col-0 (leaf) GEO bulk -0.56  
-0.57  
37 Mutant siz1-3 siz1-3 mock / not identified Col-0 GEO bulk 0.56  
0.61  
38 Fe starvation 3 h Col Fe starvation / whole
roots		 Control GEO bulk 0.56  
0.12  
39 Mutant axr3-1 (IAA) axr3-1 5 µM IAA / seedling Col (IAA) GEO bulk 0.55  
0.71  
40 DC3000 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.54  
0.61  
41 Mutant ga1-5 ga1-5 no treatment / seedling Ler-1 Comparison of plant hormone related mutant -0.53  
-0.53  
42 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages 0.53  
0.38  
43 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 0.53  
0.51  
44 UV Stress 24 h (shoot) Col-0 UV-B stress (15 min 1.8
W/m2 Philips TL40W/12;
thereafter recovery) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.52  
0.61  
45 Wounding Stress3 h (shoot) Col-0 wounding (punctured with
pins at beginning of
treatment) / shoots		 Stress mock 3 h (shoot) Stress treatments 0.52  
0.47  
46 Salt Stress 24 h (root) Col-0 salt stress (150 mM
NaCl) / roots		 Stress mock 24 h (root) Stress treatments 0.51  
0.49  
47 IAA 1 h Col-0 1 µM IAA / seedling Mock 1 h Basic hormone treatment of seedlings 0.50  
0.00  
48 MG132 3 h Col-0 10 µM MG132 /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.50  
0.51  
49 Uniconazole 12 h Col-0 10 µM uniconazole /
seedling		 Mock 12 h Effect of GA inhibitors on seedlings 0.48  
0.58  
50 DC3000 hrcC 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 hrcC-
harvested after 2h /
leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.47  
0.62  
51 Methyl Jasmonate 1 h Col-0 10 µM Metyl
Jasmonate / seedling		 Mock 1 h Basic hormone treatment of seedlings 0.44  
0.71  
52 P-chlorophenoxy- isobutyric acid 3 h Col-0 10 µM PCIB /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.41  
0.67  
53 Mutant iaa17-6 iaa17-6 mock / seedling Col GEO bulk 0.41  
0.60  
54 Mutant gh3.5-1D (AvrRpt2) gh3.5-1D Pst DC3000(avrRpt2) /
leaves		 Col-0 (AvrRpt2) GEO bulk 0.41  
0.55  
55 Mutant sav3-2 (SH) sav3-2 Low R:FR light /
seedling		 Col-0 (SH) GEO bulk 0.38  
0.56  
56 Mutant ein2(leaf) ein2 no treatment / leaves Col-0 (leaf) GEO bulk -0.38  
-0.55  
57 Methyl Jasmonate 0.5 h Col-0 10 µM MJ / seedling Mock 0.5 h Basic hormone treatment of seedlings 0.37  
0.66  
58 -Sulfate 24 h Col-0 0 µM sulfate / root Mock 24 h (1500uM sulfate) Response to sulfate limitation 0.34  
0.59  
59 Brz220 3 h Col-0 10 µM BRZ220 /
seedling		 Mock 3 h Effect of brassinosteroid inhibitors on seedlings 0.32  
0.70  
60 Uniconazole 3 h Col-0 10 µM uniconazole /
seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.31  
0.70  
61 FarRed Light 45min Col-0 continuous far red light
/ seedlings		 White Light 45min Light treatments 0.23  
-0.61  
62 E.orontii Infection 3 day Col-0 E.orontii Infection 3
day / leaves		 Uninfection 3 day Elicitor treatments 0.16  
0.61  
63 Prohexadione 3 h Col-0 10 µM prohexadione /
seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.12  
0.66  
64 Paclobutrazol 3 h Col-0 10 µM paclobutrazol
/ seedling		 Mock 3 h Effect of GA inhibitors on seedlings -0.02  
0.76  
65 Daminozide3 h Col-0 10 µM Daminozide /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.00  
0.72