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Blue Light 4 h
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 Blue Light 4 h Col-0 continuous Blue Light /
seedlings		 White Light 4 h Light treatments 1.00  
1.00  
2 FarRed Light 4 h Col-0 continuous far red light
/ seedlings		 White Light 4 h Light treatments 0.89  
0.92  
3 ARR22-ox ARR22-ox no treatment / seedling Col-0 Cytokinin treatment of seedlings 0.75  
0.37  
4 Dark 40 min pls UV-A 5 min Col-0 5 min. UV-A light pulse
followed by 40 min. of
darkness / seedlings		 Dark 45 min Light treatments 0.74  
0.66  
5 Dark 44min pls RedLigh 1min Col-0 1 min. red light pulse
followed by 44 min.
darkness / seedlings		 Dark 45 min Light treatments 0.74  
0.32  
6 Red Light 45min Col-0 continuous red light /
seedlings		 White Light 45min Light treatments -0.72  
-0.50  
7 Red Light 4 h Col-0 continuous Red Light /
seedlings		 White Light 4 h Light treatments -0.70  
-0.83  
8 Uniconazole 3 h Col-0 10 µM uniconazole /
seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.69  
0.26  
9 Brz220 3 h Col-0 10 µM BRZ220 /
seedling		 Mock 3 h Effect of brassinosteroid inhibitors on seedlings 0.69  
0.02  
10 Mutant hy5 (High Light) hy5 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk -0.69  
-0.25  
11 Mutant hy5 hy5 Continuous white light /
seedling		 Col-0 GEO bulk -0.69  
-0.18  
12 IAA 1 h Col-0 1 µM IAA / seedling Mock 1 h Basic hormone treatment of seedlings -0.68  
-0.47  
13 Dark 40min pls UV-AB 5min Col-0 5 min. UV-A/B light
pulse followed by 40
min. of darkness /
seedlings		 Dark 45 min Light treatments 0.68  
0.60  
14 Red Light 1h Col-0 Red Light / seedling Wild type(Dark) GEO bulk 0.67  
0.54  
15 Mutant phyA (Red Light 1h) phyA Red Light / seedling Red Light 1h GEO bulk -0.67  
-0.62  
16 Phytoprostane A1 4 h Col 75 µM phytoprostane
A1 / seedling		 Col-0 GEO bulk 0.67  
0.45  
17 Mutant phyAphyB (Red Light 1h) phyA phyB Red Light / seedling Red Light 1h GEO bulk -0.66  
-0.43  
18 Propiconazole 3 h Col-0 10 µM propiconazole
/ seedling		 Mock 3 h Effect of GA inhibitors on seedlings 0.65  
0.49  
19 Dark 4 h pls UV-AB 5min Col-0 5 min. UV-A/B light
pulse followed by 4 h
of darkness / seedlings		 Dark 4 h Light treatments 0.65  
0.64  
20 Mutant axr3-1 axr3-1 mock / seedling Col GEO bulk 0.63  
0.29  
21 E.orontii Infection 3 day Col-0 E.orontii Infection 3
day / leaves		 Uninfection 3 day Elicitor treatments -0.62  
-0.04  
22 Mutant nph4-1_arf19-1 (IAA) nph4-1 arf19-1 5 µM IAA / seedling Col (IAA) GEO bulk 0.60  
0.23  
23 Mutant cry1 (High Light) cry1 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk -0.60  
-0.50  
24 FarRed Light 45min Col-0 continuous far red light
/ seedlings		 White Light 45min Light treatments -0.59  
-0.78  
25 Cycloheximide 3 h Col-0 10 µM CHX /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings -0.58  
0.20  
26 Petiol (leaf7) Col-0 no treatment / leaf 7,
petiole		 Control for tissue data Developmental series; organs / tissues at different ages -0.58  
-0.05  
27 Mutant nph4-1 nph4-1 mock / seedling Col GEO bulk 0.57  
0.18  
28 Mutant nph4-1_arf19-1 nph4-1 arf19-1 mock / seedling Col GEO bulk 0.57  
0.33  
29 Mutant lfy-12(shoot apex) lfy-12 no treatment / shoot
apex, inflorescence
(after bolting)		 Shoot apex inflorescence (after bolting) Developmental series; organs / tissues at different ages 0.56  
0.34  
30 Salt Stress 24 h (shoot) Col-0 salt stress (150 mM
NaCl) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.54  
0.40  
31 Stem 2ndinternode Col-0 no treatment / stem, 2nd
internode		 Control for tissue data Developmental series; organs / tissues at different ages -0.53  
-0.09  
32 Mutant ap1-15(shoot apex) ap1-15 no treatment / shoot
apex, inflorescence
(after bolting)		 Shoot apex inflorescence (after bolting) Developmental series; organs / tissues at different ages 0.53  
0.14  
33 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 0.53  
0.27  
34 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.51  
0.25  
35 Mutant iaa5_6_19 iaa5 iaa6 iaa19 mock / seedling Col GEO bulk 0.51  
0.23  
36 Mutant gh3.5-1D (AvrRpt2) gh3.5-1D Pst DC3000(avrRpt2) /
leaves		 Col-0 (AvrRpt2) GEO bulk 0.51  
0.37  
37 PNO8 12 h Col-0 1 µM PNO8 /
seedlings		 Mock 12 h Effect of other inhibitors on seedlings -0.50  
-0.29  
38 Mutant arf19-1 arf19-1 mock / seedling Col GEO bulk 0.50  
0.22  
39 Mutant sav3-2 (SH) sav3-2 Low R:FR light /
seedling		 Col-0 (SH) GEO bulk 0.50  
0.40  
40 Brassinolide 3 h (det2) det2-1 10 nM brassinolide /
seedling		 Mock 3 h (det2) Basic hormone treatment of seedlings -0.45  
-0.53  
41 DC3000 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.43  
0.54  
42 B.cinerea 18 h infection CS6673 B. cinerea infection /
leaf		 Mock 18 h Botrytis cinerea infection 0.35  
0.61  
43 Brz220 12 h Col-0 10 µM BRZ220 /
seedling		 Mock 12 h Effect of brassinosteroid inhibitors on seedlings 0.24  
0.55  
44 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
phaseolicola harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.18  
0.53  
45 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings -0.11  
0.68  
46 P-chlorophenoxy- isobutyric acid 3 h Col-0 10 µM PCIB /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.10  
0.52