AT5G12940 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT5G12940
Description Leucine-rich repeat (LRR) family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G12940 Leucine-rich repeat (LRR) family protein 1 0.33 -0.31
2 AT1G70570 anthranilate phosphoribosyltransferase, putative -0.7 0.33 -0.3
3 AT4G14560 indole-3-acetic acid inducible AUXIN RESISTANT 5, indole-3-acetic
acid inducible		 0.68 0.3 -0.33
4 AT4G12840 Protein of unknown function (DUF707) 0.68 0.32 -0.3
5 AT1G04250 AUX/IAA transcriptional regulator family protein AUXIN RESISTANT 3, indole-3-acetic
acid inducible 17		 0.68 0.32 -0.33
6 AT4G30410 sequence-specific DNA binding transcription factors 0.65 0.33 -0.3
7 AT1G48330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits
to 40 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.65 0.29 -0.32
8 AT5G06930 LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis
thaliana protein match is: nucleolar protein gar2-related
(TAIR:AT2G42320.2); Has 3369 Blast hits to 1526 proteins in
313 species: Archae - 2; Bacteria - 910; Metazoa - 754;
Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes -
1219 (source: NCBI BLink).		 0.63 0.31 -0.32
9 AT4G11880 AGAMOUS-like 14 AGAMOUS-like 14 0.62 0.32 -0.31
10 AT4G25420 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 AT2301, ARABIDOPSIS THALIANA
GIBBERELLIN 20-OXIDASE 1, GA20OX1,
GA REQUIRING 5		 0.62 0.32 -0.33
11 AT1G78970 lupeol synthase 1 ARABIDOPSIS THALIANA LUPEOL
SYNTHASE 1, lupeol synthase 1		 0.62 0.32 -0.31
12 AT5G20380 phosphate transporter 4;5 phosphate transporter 4;5 -0.62 0.34 -0.31
13 AT4G27050 F-box/RNI-like superfamily protein -0.62 0.3 -0.33
14 AT2G26710 Cytochrome P450 superfamily protein PHYB ACTIVATION TAGGED SUPPRESSOR
1, CYP72B1, CYP734A1		 0.61 0.33 -0.32
15 AT4G16515 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 6 0.61 0.32 -0.31
16 AT5G54020 Cysteine/Histidine-rich C1 domain family protein 0.61 0.3 -0.3
17 AT4G36110 SAUR-like auxin-responsive protein family 0.61 0.33 -0.31
18 AT5G05750 DNAJ heat shock N-terminal domain-containing protein 0.6 0.32 -0.29
19 AT1G11000 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 4,
MILDEW RESISTANCE LOCUS O 4		 0.6 0.31 -0.32
20 AT2G27350 OTU-like cysteine protease family protein otubain-like deubiquitinase 1 -0.6 0.34 -0.32
21 AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein -0.6 0.31 -0.3
22 AT1G32230 WWE protein-protein interaction domain protein family ARABIDOPSIS THALIANA P8
(INTERACTING PROTEIN), AtRCD1,
CEO, CEO1, RADICAL-INDUCED CELL
DEATH1		 -0.6 0.3 -0.33
23 AT3G50340 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G67020.1); Has 128 Blast hits
to 128 proteins in 39 species: Archae - 0; Bacteria - 46;
Metazoa - 0; Fungi - 3; Plants - 76; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 0.59 0.3 -0.3
24 AT2G26350 peroxin 10 ATPEX10, peroxin 10 -0.59 0.31 -0.33
25 AT2G23300 Leucine-rich repeat protein kinase family protein 0.59 0.31 -0.32
26 AT1G14800 Nucleic acid-binding, OB-fold-like protein 0.58 0.32 -0.3
27 AT5G60950 COBRA-like protein 5 precursor COBRA-like protein 5 precursor 0.58 0.32 -0.32
28 AT1G45130 beta-galactosidase 5 beta-galactosidase 5 0.58 0.31 -0.29
29 AT5G13520 peptidase M1 family protein 0.58 0.3 -0.31
30 AT5G13460 IQ-domain 11 IQ-domain 11 0.58 0.31 -0.31
31 AT1G26090 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.57 0.31 -0.32
32 AT5G01780 2-oxoglutarate-dependent dioxygenase family protein -0.57 0.32 -0.31
33 AT5G44160 C2H2-like zinc finger protein AtIDD8, INDETERMINATE DOMAIN 8,
nutcracker		 0.57 0.31 -0.32
34 AT4G35230 BR-signaling kinase 1 BR-signaling kinase 1 -0.57 0.31 -0.29
35 AT4G11950 Protein of unknown function (DUF1191) -0.57 0.31 -0.31
36 AT5G28030 L-cysteine desulfhydrase 1 L-cysteine desulfhydrase 1 -0.56 0.32 -0.29
37 AT1G28090 Polynucleotide adenylyltransferase family protein -0.55 0.29 -0.33
38 AT2G25760 Protein kinase family protein -0.55 0.32 -0.31
39 AT4G30900 DNAse I-like superfamily protein -0.55 0.31 -0.3
40 AT5G10490 MSCS-like 2 MSCS-like 2 -0.55 0.31 -0.31
41 AT4G34640 squalene synthase 1 ERG9, squalene synthase 1 -0.55 0.29 -0.32
42 AT2G47860 Phototropic-responsive NPH3 family protein SETH6 0.55 0.29 -0.3
43 AT5G02140 Pathogenesis-related thaumatin superfamily protein 0.55 0.31 -0.3
44 AT4G14240 CBS domain-containing protein with a domain of unknown
function (DUF21)		 -0.54 0.32 -0.32
45 AT1G27520 Glycosyl hydrolase family 47 protein -0.54 0.33 -0.32
46 AT2G32950 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS THALIANA CONSTITUTIVE
PHOTOMORPHOGENIC 1, CONSTITUTIVE
PHOTOMORPHOGENIC 1, DEETIOLATED
MUTANT 340, EMBRYO DEFECTIVE 168,
FUSCA 1		 -0.53 0.3 -0.31
47 AT2G30300 Major facilitator superfamily protein -0.53 0.34 -0.32
48 AT3G16090 RING/U-box superfamily protein homolog of yeast Hrd1, homolog of
yeast Hrd1		 -0.53 0.31 -0.31
49 AT2G37980 O-fucosyltransferase family protein 0.53 0.31 -0.33
50 AT3G50430 unknown protein; Has 54 Blast hits to 54 proteins in 22
species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.53 0.33 -0.31
51 AT5G62180 carboxyesterase 20 carboxyesterase 20,
carboxyesterase 20		 0.53 0.32 -0.32
52 AT4G35520 MUTL protein homolog 3 ATMLH3, MUTL protein homolog 3 0.52 0.3 -0.31
53 AT2G32040 Major facilitator superfamily protein -0.52 0.3 -0.3
54 AT2G22810 1-aminocyclopropane-1-carboxylate synthase 4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID SYNTHASE POLYPEPTIDE,
1-aminocyclopropane-1-carboxylate
synthase 4, ATACS4		 0.52 0.31 -0.29
55 AT4G36380 Cytochrome P450 superfamily protein ROTUNDIFOLIA 3 -0.52 0.3 -0.32
56 AT1G52260 PDI-like 1-5 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 3, PDI-like
1-5, PROTEIN DISULFIDE ISOMERASE
3, PDI-like 1-5		 0.52 0.34 -0.33
57 AT2G03720 Adenine nucleotide alpha hydrolases-like superfamily
protein		 morphogenesis of root hair 6 0.51 0.31 -0.33
58 AT3G22121 other RNA -0.51 0.32 -0.32
59 AT4G33970 Leucine-rich repeat (LRR) family protein -0.51 0.31 -0.31
60 AT5G01740 Nuclear transport factor 2 (NTF2) family protein -0.51 0.32 -0.3
61 AT5G41400 RING/U-box superfamily protein 0.51 0.35 -0.3
62 AT1G28430 cytochrome P450, family 705, subfamily A, polypeptide 24 cytochrome P450, family 705,
subfamily A, polypeptide 24		 0.5 0.3 -0.28
63 AT2G30070 potassium transporter 1 potassium transporter 1, ATKT1P,
ATKUP1, potassium transporter 1,
POTASSIUM UPTAKE TRANSPORTER 1		 -0.49 0.32 -0.31
64 AT4G33520 P-type ATP-ase 1 Arabidopsis thaliana heavy metal
ATPase 6, HEAVY METAL ATPASE 6,
P-type ATP-ase 1		 -0.49 0.32 -0.31
65 AT5G57940 cyclic nucleotide gated channel 5 cyclic nucleotide gated channel 5,
cyclic nucleotide gated channel 5		 -0.49 0.31 -0.32
66 AT2G47830 Cation efflux family protein -0.49 0.31 -0.31
67 AT1G60220 UB-like protease 1D OVERLY TOLERANT TO SALT 1, UB-like
protease 1D		 -0.49 0.31 -0.31
68 AT2G12480 serine carboxypeptidase-like 43 serine carboxypeptidase-like 43 -0.49 0.34 -0.32
69 AT1G62340 PA-domain containing subtilase family protein ABNORMAL LEAF-SHAPE, ABNORMAL
LEAF-SHAPE 1		 0.49 0.31 -0.32
70 AT5G09700 Glycosyl hydrolase family protein 0.49 0.32 -0.31
71 AT1G56200 embryo defective 1303 embryo defective 1303 -0.49 0.32 -0.31
72 AT3G12100 Cation efflux family protein -0.49 0.32 -0.33
73 AT1G78700 BES1/BZR1 homolog 4 BES1/BZR1 homolog 4 0.48 0.33 -0.3
74 AT4G00760 pseudo-response regulator 8 pseudo-response regulator 8,
PSEUDO-RESPONSE REGULATOR 8		 -0.48 0.31 -0.31
75 AT1G33540 serine carboxypeptidase-like 18 serine carboxypeptidase-like 18 0.48 0.32 -0.3
76 AT3G25200 unknown protein; BEST Arabidopsis thaliana protein match
is: Protein of unknown function (DUF295)
(TAIR:AT5G54320.1); Has 64 Blast hits to 64 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.48 0.33 -0.33
77 AT1G27510 Protein of unknown function (DUF3506) -0.48 0.31 -0.32
78 AT2G36190 cell wall invertase 4 cell wall invertase 4, cell wall
invertase 4		 -0.48 0.33 -0.34
79 AT2G43660 Carbohydrate-binding X8 domain superfamily protein 0.48 0.32 -0.3
80 AT3G24030 hydroxyethylthiazole kinase family protein -0.47 0.31 -0.34
81 AT5G58100 unknown protein; INVOLVED IN: pollen exine formation;
EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 -0.47 0.31 -0.32
82 AT4G38640 Plasma-membrane choline transporter family protein -0.47 0.32 -0.29
83 AT5G11080 Ubiquitin-like superfamily protein -0.47 0.3 -0.31
84 AT1G25380 NAD+ transporter 2 ARABIDOPSIS THALIANA NAD+
TRANSPORTER 2, NAD+ transporter 2		 -0.47 0.32 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
85 C0244 Sucrose D-Sucrose Sucrose stachyose biosynthesis,
fructan degradation,
stachyose degradation,
galactose degradation III,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
sucrose degradation III,
UDP-glucose biosynthesis (from sucrose),
ajugose biosynthesis II (galactinol-independent),
sucrose biosynthesis I 		0.67 0.26 -0.3 C0244
86 C0207 Phosphatidylglycerol-34:5 - - - -0.65 0.44 -0.43
87 C0223 Quercetin-3-O-β-glucopyranoside-7-O-α-rhamnospyranoide - Quercetin-3-O-glucoside-7-O-rhamnoside quercetin glucoside biosynthesis (Arabidopsis) 0.49 0.31 -0.3 C0223