AT3G61840 : -
Query Information
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AGICode AT3G61840
Description Protein of unknown function (DUF688)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G61840 Protein of unknown function (DUF688) 1 0.33 -0.34
2 AT1G65450 HXXXD-type acyl-transferase family protein 0.84 0.31 -0.3
3 AT3G59010 pectin methylesterase 61 pectin methylesterase 61 0.81 0.3 -0.32
4 AT2G04032 zinc transporter 7 precursor zinc transporter 7 precursor 0.77 0.31 -0.33
5 AT1G06100 Fatty acid desaturase family protein 0.76 0.3 -0.32
6 AT3G10570 cytochrome P450, family 77, subfamily A, polypeptide 6 cytochrome P450, family 77,
subfamily A, polypeptide 6		 0.75 0.32 -0.33
7 AT3G27473 Cysteine/Histidine-rich C1 domain family protein -0.72 0.32 -0.31
8 AT1G63710 cytochrome P450, family 86, subfamily A, polypeptide 7 cytochrome P450, family 86,
subfamily A, polypeptide 7		 0.71 0.31 -0.31
9 AT1G65450 HXXXD-type acyl-transferase family protein 0.71 0.3 -0.31
10 AT2G33850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in
133 species: Archae - 6; Bacteria - 52; Metazoa - 135;
Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes -
2689 (source: NCBI BLink).		 0.7 0.31 -0.31
11 AT4G08340 transposable element gene 0.7 0.33 -0.32
12 AT1G49030 PLAC8 family protein -0.68 0.29 -0.32
13 AT2G42430 lateral organ boundaries-domain 16 ASYMMETRIC LEAVES2-LIKE 18,
lateral organ boundaries-domain 16		 -0.68 0.33 -0.32
14 AT2G40880 cystatin A cystatin A, cystatin A, FL3-27 0.67 0.33 -0.3
15 AT5G40330 myb domain protein 23 MYB DOMAIN PROTEIN 23, ATMYBRTF,
myb domain protein 23		 0.67 0.3 -0.31
16 AT2G26650 K+ transporter 1 K+ transporter 1, ATAKT1, K+
transporter 1		 -0.67 0.3 -0.32
17 AT5G33370 GDSL-like Lipase/Acylhydrolase superfamily protein 0.66 0.33 -0.32
18 AT5G02070 Protein kinase family protein -0.66 0.3 -0.33
19 AT2G02680 Cysteine/Histidine-rich C1 domain family protein -0.66 0.31 -0.33
20 AT2G33530 serine carboxypeptidase-like 46 serine carboxypeptidase-like 46 0.66 0.32 -0.3
21 AT4G34850 Chalcone and stilbene synthase family protein LESS ADHESIVE POLLEN 5 -0.66 0.32 -0.33
22 AT3G25930 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.66 0.32 -0.31
23 AT1G12570 Glucose-methanol-choline (GMC) oxidoreductase family
protein		 0.66 0.33 -0.33
24 AT1G29600 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.66 0.31 -0.29
25 AT3G29796 unknown protein; Has 28 Blast hits to 20 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 9 (source: NCBI
BLink).		 -0.65 0.3 -0.33
26 AT3G49890 unknown protein; Has 27 Blast hits to 27 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.65 0.3 -0.31
27 AT2G38110 glycerol-3-phosphate acyltransferase 6 GLYCEROL-3-PHOSPHATE
ACYLTRANSFERASE 6,
glycerol-3-phosphate
acyltransferase 6		 0.65 0.33 -0.34
28 AT4G01900 GLNB1 homolog GLNB1 homolog, PII 0.65 0.32 -0.32
29 AT5G42180 Peroxidase superfamily protein peroxidase 64 -0.65 0.32 -0.32
30 AT3G56240 copper chaperone copper chaperone 0.64 0.31 -0.3
31 AT5G53450 OBP3-responsive gene 1 OBP3-responsive gene 1 0.64 0.33 -0.3
32 AT3G62270 HCO3- transporter family -0.64 0.33 -0.31
33 AT2G18245 alpha/beta-Hydrolases superfamily protein 0.64 0.32 -0.33
34 AT1G58070 unknown protein; Has 286 Blast hits to 266 proteins in 81
species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi -
19; Plants - 78; Viruses - 4; Other Eukaryotes - 68
(source: NCBI BLink).		 0.64 0.3 -0.3
35 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).		 MINIYO -0.63 0.31 -0.31
36 AT1G23600 Domain of unknown function DUF220 0.63 0.33 -0.32
37 AT2G34750 RNA polymerase I specific transcription initiation factor
RRN3 protein		 -0.63 0.32 -0.33
38 AT4G36170 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.63 0.32 -0.32
39 AT2G35580 Serine protease inhibitor (SERPIN) family protein 0.63 0.31 -0.29
40 AT2G32280 Protein of unknown function (DUF1218) -0.63 0.31 -0.29
41 AT5G55720 Pectin lyase-like superfamily protein 0.62 0.29 -0.34
42 AT5G23180 BEST Arabidopsis thaliana protein match is: DNA-binding
storekeeper protein-related transcriptional regulator
(TAIR:AT4G01260.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.62 0.32 -0.31
43 AT3G59220 pirin ATPIRIN1, pirin, PRN1 -0.62 0.32 -0.33
44 AT3G18930 RING/U-box superfamily protein 0.62 0.32 -0.31
45 AT2G29100 glutamate receptor 2.9 glutamate receptor 2.9, GLUTAMATE
RECEPTOR 2.9, glutamate receptor
2.9		 0.61 0.3 -0.29
46 AT2G04025 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 3 -0.61 0.33 -0.33
47 AT1G73360 homeodomain GLABROUS 11 HOMEODOMAIN GLABROUS 11, ENHANCED
DROUGHT TOLERANCE 1, homeodomain
GLABROUS 11		 0.61 0.31 -0.32
48 AT1G66460 Protein kinase superfamily protein 0.61 0.32 -0.31
49 AT1G77990 STAS domain / Sulfate transporter family AST56, SULPHATE TRANSPORTER 2;2 0.61 0.31 -0.29
50 AT3G45430 Concanavalin A-like lectin protein kinase family protein 0.61 0.33 -0.32
51 AT1G70210 CYCLIN D1;1 ATCYCD1;1, CYCLIN D1;1 0.61 0.33 -0.29
52 AT1G21870 golgi nucleotide sugar transporter 5 golgi nucleotide sugar transporter
5		 0.61 0.32 -0.31
53 AT2G14960 Auxin-responsive GH3 family protein GH3.1 -0.6 0.31 -0.33
54 AT1G02550 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.6 0.33 -0.33
55 AT3G27920 myb domain protein 0 ATGL1, myb domain protein 0,
GLABRA 1, myb domain protein 0		 0.6 0.31 -0.31
56 AT1G23640 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana
protein match is: Domain of unknown function DUF220
(TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.6 0.3 -0.3
57 AT1G33790 jacalin lectin family protein -0.59 0.32 -0.31
58 AT4G36930 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 SPATULA -0.59 0.33 -0.33
59 AT3G29160 SNF1 kinase homolog 11 SNF1 kinase homolog 11, SNF1
kinase homolog 11, SNF1 kinase
homolog 11, SNF1-RELATED PROTEIN
KINASE 1.2		 0.59 0.3 -0.32
60 AT1G55610 BRI1 like BRI1 like -0.59 0.32 -0.34
61 AT3G07130 purple acid phosphatase 15 PURPLE ACID PHOSPHATASE 15, purple
acid phosphatase 15		 -0.59 0.31 -0.34
62 AT3G45320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G60330.1); Has 7 Blast hits to
7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.58 0.29 -0.3
63 AT1G33820 unknown protein; Has 46 Blast hits to 44 proteins in 25
species: Archae - 0; Bacteria - 8; Metazoa - 18; Fungi - 1;
Plants - 6; Viruses - 0; Other Eukaryotes - 13 (source:
NCBI BLink).		 0.58 0.3 -0.33
64 AT4G09390 transposable element gene 0.58 0.32 -0.31
65 AT4G17690 Peroxidase superfamily protein 0.58 0.28 -0.32
66 AT2G19640 ASH1-related protein 2 ASH1-related 2, SET DOMAIN PROTEIN
39		 -0.58 0.31 -0.31
67 AT1G01600 cytochrome P450, family 86, subfamily A, polypeptide 4 cytochrome P450, family 86,
subfamily A, polypeptide 4		 0.58 0.33 -0.32
68 AT3G22870 F-box and associated interaction domains-containing protein 0.58 0.33 -0.31
69 AT2G35920 RNA helicase family protein -0.57 0.29 -0.34
70 AT3G55870 ADC synthase superfamily protein 0.57 0.31 -0.32
71 AT4G00232 DNA-binding storekeeper protein-related transcriptional
regulator		 0.57 0.31 -0.33
72 AT5G54230 myb domain protein 49 myb domain protein 49, myb domain
protein 49		 -0.57 0.31 -0.29
73 AT2G27000 cytochrome P450, family 705, subfamily A, polypeptide 8 cytochrome P450, family 705,
subfamily A, polypeptide 8		 -0.57 0.27 -0.31
74 AT5G15480 C2H2-type zinc finger family protein 0.57 0.33 -0.32
75 AT1G25460 NAD(P)-binding Rossmann-fold superfamily protein 0.57 0.3 -0.31
76 AT3G30660 transposable element gene -0.57 0.33 -0.32
77 AT1G53860 Remorin family protein -0.57 0.31 -0.32
78 AT3G22940 F-box associated ubiquitination effector family protein 0.57 0.32 -0.32
79 AT5G07400 forkhead-associated domain-containing protein / FHA
domain-containing protein		 -0.56 0.32 -0.31
80 AT3G25400 CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase
MazG-related, RS21-C6 (InterPro:IPR011394), EAR
(InterPro:IPR009039), NTP pyrophosphohydrolase MazG,
putative catalytic core (InterPro:IPR004518); Has 1123
Blast hits to 1121 proteins in 452 species: Archae - 22;
Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83;
Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).		 -0.56 0.31 -0.3
81 AT5G18910 Protein kinase superfamily protein -0.56 0.29 -0.31
82 ATMG00670 hypothetical protein ORF275 -0.56 0.32 -0.32
83 AT5G12080 mechanosensitive channel of small conductance-like 10 ATMSL10, mechanosensitive channel
of small conductance-like 10		 -0.55 0.33 -0.29
84 AT3G54000 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits
to 94 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.33 -0.31
85 AT3G21090 ABC-2 type transporter family protein ATP-binding cassette G15 -0.55 0.33 -0.31
86 AT3G50850 Putative methyltransferase family protein -0.55 0.31 -0.31
87 AT1G25360 Pentatricopeptide repeat (PPR) superfamily protein -0.55 0.31 -0.32
88 AT3G16490 IQ-domain 26 IQ-domain 26 -0.55 0.33 -0.32
89 AT5G38910 RmlC-like cupins superfamily protein -0.55 0.33 -0.3
90 AT1G72840 Disease resistance protein (TIR-NBS-LRR class) -0.54 0.32 -0.3
91 AT1G77360 Tetratricopeptide repeat (TPR)-like superfamily protein -0.54 0.31 -0.28
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
92 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.81 0.46 -0.42 C0234
93 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.81 0.44 -0.46
94 C0159 MST_1505.6 - - - 0.8 0.43 -0.48
95 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.8 0.44 -0.45 C0087
96 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		0.78 0.43 -0.43 C0186
97 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.78 0.43 -0.46 C0088
98 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.78 0.43 -0.45 C0261
99 C0006 β-Homothreonine L-β-Homothreonine - - 0.78 0.42 -0.45
100 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.77 0.46 -0.44 C0262
101 C0162 MST_1588.3 - - - 0.77 0.42 -0.47
102 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.76 0.45 -0.41 C0075
103 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.75 0.4 -0.49 C0053
104 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.73 0.44 -0.43 C0091
105 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.72 0.44 -0.46 C0032
106 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.72 0.43 -0.47 C0030
107 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		0.72 0.44 -0.44 C0027
108 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.7 0.46 -0.47 C0099
109 C0026 2-Hydroxyisobutyric acid - - β oxidation 0.69 0.46 -0.42
110 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III 0.61 0.45 -0.47 C0195
111 C0196 Phosphatidylcholine-34:3 - Phosphatidylcholine-34:3 choline biosynthesis III,
diacylglycerol biosynthesis,
phospholipases,
triacylglycerol biosynthesis,
linoleate biosynthesis I,
phosphatidylcholine biosynthesis III,
glutathione redox reactions I 		0.58 0.45 -0.46 C0196