AT3G57980 : -
Query Information
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AGICode AT3G57980
Description DNA-binding bromodomain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G57980 DNA-binding bromodomain-containing protein 1 0.3 -0.32
2 AT1G16030 heat shock protein 70B heat shock protein 70B 0.73 0.3 -0.32
3 AT1G54770 Fcf2 pre-rRNA processing protein -0.69 0.33 -0.32
4 AT1G57620 emp24/gp25L/p24 family/GOLD family protein -0.68 0.33 -0.3
5 AT1G34350 unknown protein; Has 192 Blast hits to 192 proteins in 79
species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi -
0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source:
NCBI BLink).		 -0.67 0.29 -0.3
6 AT5G47930 Zinc-binding ribosomal protein family protein -0.66 0.3 -0.32
7 AT5G11010 Pre-mRNA cleavage complex II protein family -0.65 0.32 -0.3
8 AT5G05220 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.64 0.33 -0.31
9 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 -0.64 0.32 -0.33
10 AT1G09910 Rhamnogalacturonate lyase family protein 0.64 0.3 -0.31
11 AT3G56800 calmodulin 3 CALMODULIN 3, calmodulin 3 -0.63 0.31 -0.33
12 AT5G58230 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS MULTICOPY SUPRESSOR OF
IRA1, MATERNAL EFFECT EMBRYO
ARREST 70, MULTICOPY SUPRESSOR OF
IRA1		 -0.63 0.29 -0.32
13 AT2G32580 Protein of unknown function (DUF1068) -0.63 0.31 -0.31
14 AT2G18740 Small nuclear ribonucleoprotein family protein -0.62 0.31 -0.29
15 AT4G00750 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.62 0.31 -0.3
16 AT5G49290 receptor like protein 56 receptor like protein 56, receptor
like protein 56		 0.61 0.33 -0.32
17 AT1G72830 nuclear factor Y, subunit A3 ATHAP2C, HAP2C, nuclear factor Y,
subunit A3		 0.61 0.31 -0.31
18 AT5G37660 plasmodesmata-located protein 7 plasmodesmata-located protein 7 -0.61 0.33 -0.31
19 AT2G44820 unknown protein; Has 70 Blast hits to 70 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4;
Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 -0.61 0.32 -0.35
20 AT5G27820 Ribosomal L18p/L5e family protein -0.6 0.32 -0.33
21 AT5G43840 heat shock transcription factor A6A heat shock transcription factor
A6A, heat shock transcription
factor A6A		 0.6 0.3 -0.32
22 AT3G46910 Cullin family protein 0.6 0.35 -0.29
23 AT3G53520 UDP-glucuronic acid decarboxylase 1 ATUXS1, UDP-glucuronic acid
decarboxylase 1		 -0.6 0.33 -0.3
24 AT3G12820 myb domain protein 10 myb domain protein 10, myb domain
protein 10		 -0.6 0.31 -0.31
25 AT5G52460 FBD, F-box and Leucine Rich Repeat domains containing
protein		 embryo sac development arrest 41 0.6 0.33 -0.3
26 AT3G54170 FKBP12 interacting protein 37 FKBP12 interacting protein 37,
FKBP12 interacting protein 37		 -0.59 0.3 -0.31
27 AT3G03620 MATE efflux family protein 0.59 0.31 -0.3
28 AT5G35740 Carbohydrate-binding X8 domain superfamily protein -0.59 0.34 -0.31
29 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 0.59 0.32 -0.32
30 AT5G36910 thionin 2.2 thionin 2.2 -0.59 0.31 -0.32
31 AT5G45160 Root hair defective 3 GTP-binding protein (RHD3) 0.59 0.3 -0.33
32 AT1G57943 purine permease 17 purine permease 17, purine
permease 17		 0.59 0.29 -0.33
33 AT5G49440 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.59 0.3 -0.33
34 AT3G03240 alpha/beta-Hydrolases superfamily protein 0.59 0.31 -0.3
35 AT3G54010 FKBP-type peptidyl-prolyl cis-trans isomerase family
protein		 DEI1, PASTICCINO 1 0.59 0.32 -0.32
36 AT5G62800 Protein with RING/U-box and TRAF-like domains 0.58 0.31 -0.32
37 AT1G11690 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G20350.1); Has 5959 Blast hits
to 4807 proteins in 476 species: Archae - 156; Bacteria -
436; Metazoa - 2789; Fungi - 309; Plants - 336; Viruses -
9; Other Eukaryotes - 1924 (source: NCBI BLink).		 0.58 0.33 -0.33
38 AT3G17830 Molecular chaperone Hsp40/DnaJ family protein -0.58 0.32 -0.32
39 AT2G29130 laccase 2 ATLAC2, laccase 2 0.58 0.31 -0.34
40 AT1G07120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
envelope; EXPRESSED IN: inflorescence meristem, petal, leaf
whorl, flower; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: Tetratricopeptide repeat
(TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288
Blast hits to 260 proteins in 50 species: Archae - 0;
Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163;
Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).		 0.58 0.34 -0.31
41 AT4G18990 xyloglucan endotransglucosylase/hydrolase 29 xyloglucan
endotransglucosylase/hydrolase 29		 0.58 0.31 -0.33
42 AT4G33440 Pectin lyase-like superfamily protein 0.57 0.33 -0.32
43 AT1G48470 glutamine synthetase 1;5 glutamine synthetase 1;5 0.56 0.32 -0.31
44 AT4G07480 transposable element gene -0.56 0.31 -0.3
45 AT4G26460 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.56 0.3 -0.32
46 AT1G03750 switch 2 CHROMATIN REMODELING 9 0.56 0.33 -0.33
47 AT5G45090 phloem protein 2-A7 phloem protein 2-A7, phloem
protein 2-A7		 0.56 0.3 -0.32
48 AT3G52130 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.56 0.31 -0.32
49 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.56 0.33 -0.31
50 AT3G29380 Cyclin-like family protein plant-specific TFIIB-related
protein 2		 0.56 0.34 -0.29
51 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein 0.55 0.31 -0.32
52 AT5G02720 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G53490.1); Has 47 Blast hits
to 47 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.55 0.3 -0.33
53 AT1G76850 exocyst complex component sec5 exocyst complex component sec5 0.55 0.32 -0.3
54 AT5G18360 Disease resistance protein (TIR-NBS-LRR class) family 0.53 0.29 -0.3
55 AT1G19390 Wall-associated kinase family protein 0.53 0.31 -0.3
56 AT5G35660 Glycine-rich protein family 0.53 0.33 -0.29
57 AT5G35260 transposable element gene 0.53 0.31 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
58 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		0.75 0.44 -0.46 C0057
59 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.74 0.43 -0.43 C0056
60 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.74 0.42 -0.44 C0099
61 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.74 0.43 -0.46 C0053
62 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.73 0.45 -0.46 C0032
63 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.72 0.43 -0.46 C0030
64 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II 0.68 0.34 -0.34 C0097