AT3G46580 : ATMBD5
Query Information
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AGICode AT3G46580
Description methyl-CPG-binding domain protein 5
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G46580 methyl-CPG-binding domain protein 5 ATMBD5, METHYL-CPG-BINDING DOMAIN
PROTEIN 05, methyl-CPG-binding
domain protein 5		 1 0.31 -0.32
2 AT2G41730 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G24640.1); Has 25 Blast hits
to 25 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.74 0.3 -0.3
3 AT5G08430 SWIB/MDM2 domain;Plus-3;GYF 0.71 0.33 -0.3
4 AT4G21650 Subtilase family protein 0.71 0.33 -0.3
5 AT5G26860 lon protease 1 lon protease 1, LON_ARA_ARA -0.71 0.3 -0.33
6 AT1G31370 Ubiquitin-specific protease family C19-related protein 0.7 0.3 -0.34
7 AT5G20480 EF-TU receptor EF-TU receptor -0.7 0.32 -0.32
8 AT3G62550 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.7 0.35 -0.29
9 AT1G18670 Protein kinase superfamily protein IMPAIRED IN BABA-INDUCED STERILITY
1		 0.7 0.32 -0.32
10 AT4G10030 alpha/beta-Hydrolases superfamily protein 0.7 0.3 -0.3
11 AT3G17910 Surfeit locus 1 cytochrome c oxidase biogenesis protein EMBRYO DEFECTIVE 3121, SURFEIT 1 -0.69 0.31 -0.3
12 AT2G04070 MATE efflux family protein -0.69 0.32 -0.32
13 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.68 0.3 -0.31
14 AT3G62150 P-glycoprotein 21 ATP-binding cassette B21,
P-glycoprotein 21		 -0.68 0.32 -0.31
15 AT5G35735 Auxin-responsive family protein -0.68 0.31 -0.31
16 AT1G18480 Calcineurin-like metallo-phosphoesterase superfamily
protein		 AtSLP2, Shewenella-like protein
phosphatase 2		 -0.67 0.31 -0.3
17 AT3G49780 phytosulfokine 4 precursor ATPSK3 (FORMER SYMBOL),
phytosulfokine 4 precursor,
phytosulfokine 4 precursor		 -0.67 0.31 -0.33
18 AT1G77440 20S proteasome beta subunit C2 20S proteasome beta subunit C2 -0.67 0.31 -0.32
19 AT5G67500 voltage dependent anion channel 2 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 2, voltage
dependent anion channel 2		 -0.67 0.31 -0.33
20 AT1G72530 plastid developmental protein DAG, putative -0.67 0.32 -0.31
21 AT1G09240 nicotianamine synthase 3 ARABIDOPSIS THALIANA NICOTIANAMINE
SYNTHASE 3, nicotianamine synthase
3		 -0.66 0.31 -0.32
22 AT5G37600 glutamine synthase clone R1 ARABIDOPSIS GLUTAMINE SYNTHASE
1;1, ARABIDOPSIS THALIANA
GLUTAMINE SYNTHASE CLONE R1,
GLUTAMINE SYNTHASE 1;1, glutamine
synthase clone R1		 -0.66 0.28 -0.31
23 AT2G38610 RNA-binding KH domain-containing protein -0.66 0.32 -0.32
24 AT3G43210 ATP binding microtubule motor family protein ARABIDOPSIS NPK1-ACTIVATING
KINESIN 2, NPK1-ACTIVATING KINESIN
2, TETRASPORE		 0.66 0.32 -0.3
25 AT1G77250 RING/FYVE/PHD-type zinc finger family protein 0.65 0.33 -0.31
26 AT3G10200 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.65 0.32 -0.33
27 AT2G32970 unknown protein; Has 158 Blast hits to 154 proteins in 73
species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source:
NCBI BLink).		 0.65 0.3 -0.31
28 AT3G56110 prenylated RAB acceptor 1.B1 prenylated RAB acceptor 1.B1 -0.64 0.32 -0.31
29 AT4G38500 Protein of unknown function (DUF616) -0.64 0.32 -0.31
30 AT5G22720 F-box/RNI-like superfamily protein 0.64 0.34 -0.32
31 AT3G24515 ubiquitin-conjugating enzyme 37 ubiquitin-conjugating enzyme 37 0.63 0.31 -0.33
32 AT5G55400 Actin binding Calponin homology (CH) domain-containing
protein		 0.63 0.3 -0.31
33 AT4G24920 secE/sec61-gamma protein transport protein -0.63 0.33 -0.31
34 AT1G27970 nuclear transport factor 2B nuclear transport factor 2B -0.63 0.32 -0.28
35 AT4G24330 Protein of unknown function (DUF1682) -0.63 0.31 -0.31
36 AT4G39880 Ribosomal protein L23/L15e family protein -0.63 0.35 -0.31
37 AT1G53350 Disease resistance protein (CC-NBS-LRR class) family 0.63 0.29 -0.32
38 AT1G79460 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 ARABIDOPSIS THALIANA ENT-KAURENE
SYNTHASE, ARABIDOPSIS THALIANA
ENT-KAURENE SYNTHASE 1, GA
REQUIRING 2, KS, ENT-KAURENE
SYNTHASE 1		 0.63 0.34 -0.32
39 AT1G06110 SKP1/ASK-interacting protein 16 SKP1/ASK-interacting protein 16 0.63 0.31 -0.31
40 AT3G04090 small and basic intrinsic protein 1A SIP1;1, small and basic intrinsic
protein 1A		 -0.63 0.31 -0.3
41 AT3G56270 Plant protein of unknown function (DUF827) 0.62 0.32 -0.32
42 AT3G01040 galacturonosyltransferase 13 galacturonosyltransferase 13 -0.62 0.3 -0.32
43 AT1G18630 glycine-rich RNA-binding protein 6 glycine-rich RNA-binding protein 6 -0.61 0.31 -0.31
44 AT4G24800 MA3 domain-containing protein EIN2 C-terminus Interacting
Protein 1		 0.61 0.31 -0.31
45 AT1G07030 Mitochondrial substrate carrier family protein -0.61 0.3 -0.31
46 AT2G06410 transposable element gene 0.61 0.3 -0.3
47 AT2G04900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF423
(InterPro:IPR006696); Has 1824 Blast hits to 1824 proteins
in 878 species: Archae - 0; Bacteria - 1498; Metazoa - 118;
Fungi - 14; Plants - 58; Viruses - 0; Other Eukaryotes -
136 (source: NCBI BLink).		 -0.6 0.33 -0.32
48 AT2G40730 Protein kinase family protein with ARM repeat domain cytoplasmic tRNA export protein -0.6 0.32 -0.32
49 AT5G03380 Heavy metal transport/detoxification superfamily protein -0.6 0.3 -0.3
50 AT2G18730 diacylglycerol kinase 3 ATDGK3, diacylglycerol kinase 3 -0.59 0.32 -0.32
51 AT5G05350 PLAC8 family protein 0.59 0.3 -0.33
52 AT5G15880 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.59 0.29 -0.3
53 AT4G38900 Basic-leucine zipper (bZIP) transcription factor family
protein		 0.59 0.31 -0.31
54 AT1G59870 ABC-2 and Plant PDR ABC-type transporter family protein ATP-binding cassette G36,
Arabidopsis thaliana ATP-binding
cassette G36, ARABIDOPSIS
PLEIOTROPIC DRUG RESISTANCE 8,
PLEIOTROPIC DRUG RESISTANCE 8,
PENETRATION 3		 -0.58 0.3 -0.34
55 AT5G36270 pseudogene of dehydroascorbate reductase 0.58 0.29 -0.33
56 AT4G16210 enoyl-CoA hydratase/isomerase A ENOYL-COA HYDRATASE 2, enoyl-CoA
hydratase/isomerase A		 -0.58 0.31 -0.31
57 AT5G44260 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.58 0.31 -0.31
58 AT1G50960 gibberellin 2-oxidase 7 ARABIDOPSIS THALIANA GIBBERELLIN
2-OXIDASE 7, gibberellin 2-oxidase
7		 0.58 0.3 -0.31
59 AT2G04050 MATE efflux family protein -0.58 0.31 -0.33
60 AT4G37850 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.58 0.34 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
61 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.77 0.44 -0.43 C0030
62 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.73 0.43 -0.45 C0234
63 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.73 0.43 -0.46 C0261
64 C0094 Galactosamine D-Galactosamine - - 0.7 0.47 -0.46
65 C0006 β-Homothreonine L-β-Homothreonine - - 0.68 0.46 -0.43
66 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		0.67 0.3 -0.33 C0005
67 C0259 Tyramine - Tyramine hydroxycinnamic acid tyramine amides biosynthesis,
suberin biosynthesis 		0.67 0.29 -0.35 C0259
68 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		0.66 0.44 -0.43 C0186
69 C0018 sn-Glycerol-3-phosphate D,L-sn-Glycerol-3-phosphate sn-Glycerol-3-phosphate CDP-diacylglycerol biosynthesis II,
phosphatidylglycerol biosynthesis II (non-plastidic),
triacylglycerol biosynthesis,
glycerol degradation IV,
glycerol-3-phosphate shuttle,
a quinone + sn-glycerol-3-phosphate -> a quinol + dihydroxyacetone phosphate,
CDP-diacylglycerol biosynthesis I,
cardiolipin biosynthesis II,
phosphatidylglycerol biosynthesis I (plastidic),
sn-glycerol-3-phosphate + a ubiquinone -> a ubiquinol + dihydroxyacetone phosphate,
an electron-transfer-related quinone + sn-glycerol-3-phosphate -> an electron-transfer-related quinol + dihydroxyacetone phosphate 		-0.65 0.46 -0.45 C0018
70 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.65 0.44 -0.46 C0075
71 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.65 0.45 -0.45 C0088