AT4G31985 : -
Query Information
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AGICode AT4G31985
Description Ribosomal protein L39 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G31985 Ribosomal protein L39 family protein 1 0.31 -0.32
2 AT3G09500 Ribosomal L29 family protein 0.92 0.33 -0.32
3 AT1G74270 Ribosomal protein L35Ae family protein 0.91 0.34 -0.34
4 AT5G57290 60S acidic ribosomal protein family 0.89 0.33 -0.32
5 AT3G47370 Ribosomal protein S10p/S20e family protein 0.89 0.33 -0.33
6 AT5G27770 Ribosomal L22e protein family 0.89 0.31 -0.31
7 AT3G48930 Nucleic acid-binding, OB-fold-like protein embryo defective 1080 0.88 0.33 -0.34
8 AT3G07230 wound-responsive protein-related 0.87 0.31 -0.35
9 AT1G69620 ribosomal protein L34 ribosomal protein L34 0.87 0.29 -0.3
10 AT3G62870 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.87 0.3 -0.3
11 AT5G03850 Nucleic acid-binding, OB-fold-like protein 0.87 0.32 -0.32
12 AT5G07090 Ribosomal protein S4 (RPS4A) family protein 0.87 0.3 -0.31
13 AT2G25210 Ribosomal protein L39 family protein 0.87 0.32 -0.3
14 AT4G33865 Ribosomal protein S14p/S29e family protein 0.87 0.32 -0.33
15 AT5G02450 Ribosomal protein L36e family protein 0.87 0.3 -0.31
16 AT5G56670 Ribosomal protein S30 family protein 0.87 0.29 -0.3
17 AT3G07910 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Reactive oxygen species modulator 1 (InterPro:IPR018450);
Has 192 Blast hits to 192 proteins in 80 species: Archae -
0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		 0.86 0.32 -0.31
18 AT2G44860 Ribosomal protein L24e family protein 0.86 0.32 -0.33
19 AT1G04480 Ribosomal protein L14p/L23e family protein 0.86 0.32 -0.33
20 AT1G67430 Ribosomal protein L22p/L17e family protein 0.86 0.31 -0.31
21 AT1G26880 Ribosomal protein L34e superfamily protein 0.86 0.32 -0.32
22 AT5G23900 Ribosomal protein L13e family protein 0.86 0.31 -0.31
23 AT2G19730 Ribosomal L28e protein family 0.86 0.32 -0.3
24 AT1G02780 Ribosomal protein L19e family protein embryo defective 2386 0.85 0.3 -0.32
25 AT3G49010 breast basic conserved 1 breast basic conserved 1, breast
basic conserved 1, 40S RIBOSOMAL
PROTEIN		 0.85 0.33 -0.32
26 AT2G27530 Ribosomal protein L1p/L10e family PIGGYBACK1 0.85 0.31 -0.31
27 AT1G18540 Ribosomal protein L6 family protein 0.85 0.31 -0.31
28 AT5G41520 RNA binding Plectin/S10 domain-containing protein 0.85 0.33 -0.33
29 AT1G34030 Ribosomal protein S13/S18 family 0.85 0.3 -0.31
30 AT2G39390 Ribosomal L29 family protein 0.85 0.32 -0.32
31 AT1G75560 zinc knuckle (CCHC-type) family protein 0.85 0.31 -0.31
32 AT2G34480 Ribosomal protein L18ae/LX family protein 0.85 0.31 -0.3
33 AT2G39460 ribosomal protein L23AA ARABIDOPSIS THALIANA RIBOSOMAL
PROTEIN L23A, RIBOSOMAL PROTEIN
L23A, RIBOSOMAL PROTEIN L23A1,
ribosomal protein L23AA		 0.85 0.32 -0.33
34 AT1G15250 Zinc-binding ribosomal protein family protein 0.84 0.32 -0.32
35 AT2G44120 Ribosomal protein L30/L7 family protein 0.84 0.32 -0.33
36 AT1G76160 SKU5 similar 5 SKU5 similar 5 0.84 0.29 -0.32
37 AT4G29390 Ribosomal protein S30 family protein 0.84 0.3 -0.32
38 AT2G36160 Ribosomal protein S11 family protein 0.84 0.33 -0.33
39 AT5G10360 Ribosomal protein S6e embryo defective 3010, Ribosomal
protein small subunit 6b		 0.84 0.31 -0.32
40 AT3G05560 Ribosomal L22e protein family 0.83 0.31 -0.33
41 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 0.83 0.31 -0.31
42 AT5G41010 DNA directed RNA polymerase, 7 kDa subunit NRPB12, NRPD12, NRPE12 0.83 0.34 -0.33
43 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 0.83 0.32 -0.3
44 AT1G44835 YbaK/aminoacyl-tRNA synthetase-associated domain 0.83 0.33 -0.31
45 AT3G09200 Ribosomal protein L10 family protein 0.83 0.3 -0.32
46 AT2G17360 Ribosomal protein S4 (RPS4A) family protein 0.83 0.31 -0.32
47 AT5G06360 Ribosomal protein S8e family protein 0.82 0.34 -0.33
48 AT3G25940 TFIIB zinc-binding protein 0.82 0.31 -0.28
49 AT2G43460 Ribosomal L38e protein family 0.82 0.33 -0.31
50 AT3G11400 eukaryotic translation initiation factor 3G1 ATEIF3G1, eukaryotic translation
initiation factor 3G1		 0.82 0.31 -0.33
51 AT4G39300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.82 0.32 -0.35
52 AT1G23290 Ribosomal protein L18e/L15 superfamily protein RIBOSOMAL PROTEIN L27A, RPL27AB 0.82 0.33 -0.31
53 AT4G17970 aluminum-activated, malate transporter 12 aluminum-activated, malate
transporter 12, ATALMT12		 -0.82 0.31 -0.31
54 AT3G59650 mitochondrial ribosomal protein L51/S25/CI-B8 family
protein		 0.82 0.3 -0.32
55 AT3G04920 Ribosomal protein S24e family protein 0.81 0.32 -0.29
56 AT5G14040 phosphate transporter 3;1 phosphate transporter 3;1 0.81 0.31 -0.31
57 AT4G24940 SUMO-activating enzyme 1A AT-SAE1-1, SUMO-ACTIVATING ENZYME
1A, SUMO-activating enzyme 1A		 0.81 0.31 -0.33
58 AT4G13170 Ribosomal protein L13 family protein 0.81 0.31 -0.31
59 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.81 0.33 -0.3
60 AT1G26740 Ribosomal L32p protein family 0.81 0.33 -0.31
61 AT1G31817 Ribosomal L18p/L5e family protein NUCLEAR FUSION DEFECTIVE 3 0.81 0.34 -0.32
62 AT3G53890 Ribosomal protein S21e 0.8 0.3 -0.31
63 AT1G22920 COP9 signalosome 5A ARABIDOPSIS JAB1 HOMOLOG 1, COP9
signalosome 5A, JAB1		 0.8 0.33 -0.33
64 AT2G32220 Ribosomal L27e protein family 0.8 0.33 -0.31
65 AT4G38100 unknown protein; LOCATED IN: chloroplast thylakoid
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G01150.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.8 0.31 -0.31
66 AT2G46230 PIN domain-like family protein 0.8 0.32 -0.31
67 AT5G43970 translocase of outer membrane 22-V ATTOM22-V, translocase of outer
membrane 22-V, TRANSLOCASE OUTER
MITOCHONDRIAL MEMBRANE 22-V		 0.8 0.33 -0.31
68 AT2G25670 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928
proteins in 1799 species: Archae - 86; Bacteria - 6347;
Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses -
259; Other Eukaryotes - 13792 (source: NCBI BLink).		 0.8 0.31 -0.33
69 AT2G45860 unknown protein; Has 32 Blast hits to 32 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.8 0.33 -0.31
70 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 0.8 0.29 -0.34
71 AT3G10090 Nucleic acid-binding, OB-fold-like protein 0.8 0.32 -0.32
72 AT1G14980 chaperonin 10 chaperonin 10 0.8 0.33 -0.31
73 AT2G40010 Ribosomal protein L10 family protein 0.8 0.33 -0.35
74 AT3G18740 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein receptor-like kinase 902 0.8 0.3 -0.34
75 AT2G37020 Translin family protein 0.79 0.32 -0.31
76 AT3G62940 Cysteine proteinases superfamily protein 0.79 0.34 -0.33
77 AT3G06790 plastid developmental protein DAG, putative 0.78 0.3 -0.32
78 AT2G19480 nucleosome assembly protein 1;2 nucleosome assembly protein 1;2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 2		 0.78 0.33 -0.32
79 AT5G11340 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.78 0.32 -0.33
80 AT4G24440 transcription initiation factor IIA gamma chain /
TFIIA-gamma (TFIIA-S)		 0.78 0.32 -0.32
81 AT2G23930 probable small nuclear ribonucleoprotein G probable small nuclear
ribonucleoprotein G		 0.78 0.3 -0.31
82 AT2G21290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.78 0.32 -0.31
83 AT4G39920 C-CAP/cofactor C-like domain-containing protein PORCINO, TUBULIN-FOLDING COFACTOR
C		 0.78 0.31 -0.31
84 AT5G16470 zinc finger (C2H2 type) family protein 0.78 0.33 -0.3
85 AT4G02230 Ribosomal protein L19e family protein 0.78 0.32 -0.32
86 AT3G51830 SAC domain-containing protein 8 ATG5, SAC domain-containing
protein 8		 -0.77 0.32 -0.31
87 AT1G72770 homology to ABI1 HYPERSENSITIVE TO ABA1 -0.77 0.32 -0.32
88 AT3G16940 calmodulin binding;transcription regulators -0.75 0.32 -0.31
89 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14		 -0.75 0.3 -0.31
90 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.75 0.31 -0.3
91 AT1G51140 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.75 0.32 -0.31
92 AT2G46680 homeobox 7 homeobox 7, ARABIDOPSIS THALIANA
HOMEOBOX 7, homeobox 7		 -0.75 0.32 -0.32
93 AT3G11410 protein phosphatase 2CA AHG3, ARABIDOPSIS THALIANA PROTEIN
PHOSPHATASE 2CA, protein
phosphatase 2CA		 -0.75 0.33 -0.31
94 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 -0.74 0.31 -0.32
95 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 -0.74 0.3 -0.34
96 AT3G19620 Glycosyl hydrolase family protein -0.73 0.3 -0.32
97 AT3G13784 cell wall invertase 5 cell wall invertase 5, cell wall
invertase 5		 -0.73 0.3 -0.31
98 AT5G63560 HXXXD-type acyl-transferase family protein -0.72 0.32 -0.33
99 AT3G57540 Remorin family protein -0.71 0.31 -0.32
100 AT2G01580 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits
to 129 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.71 0.33 -0.34
101 AT5G43840 heat shock transcription factor A6A heat shock transcription factor
A6A, heat shock transcription
factor A6A		 -0.71 0.32 -0.34
102 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 -0.71 0.33 -0.31
103 AT5G63200 tetratricopeptide repeat (TPR)-containing protein -0.71 0.3 -0.3
104 AT2G25690 Protein of unknown function (DUF581) -0.7 0.3 -0.29
105 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein -0.7 0.33 -0.32
106 AT1G80310 sulfate transmembrane transporters molybdate transporter 2 -0.69 0.33 -0.32
107 AT3G13040 myb-like HTH transcriptional regulator family protein -0.69 0.32 -0.3
108 AT3G56050 Protein kinase family protein -0.68 0.31 -0.31
109 AT1G24600 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits
to 18 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.33 -0.34
110 AT1G02120 GRAM domain family protein VASCULAR ASSOCIATED DEATH1 -0.67 0.31 -0.32
111 AT5G42600 marneral synthase marneral synthase -0.67 0.33 -0.32
112 AT5G44310 Late embryogenesis abundant protein (LEA) family protein -0.67 0.33 -0.31
113 AT1G33813 transposable element gene -0.67 0.32 -0.32
114 AT1G68710 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.67 0.32 -0.32
115 AT3G53980 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.67 0.33 -0.29
116 AT5G24380 YELLOW STRIPE like 2 YELLOW STRIPE LIKE 2, YELLOW
STRIPE like 2		 -0.66 0.33 -0.31
117 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 -0.66 0.29 -0.31
118 AT5G12930 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.66 0.32 -0.3
119 AT3G50220 Protein of unknown function (DUF579) IRREGULAR XYLEM 15 -0.66 0.3 -0.32
120 AT4G26180 Mitochondrial substrate carrier family protein -0.66 0.34 -0.32
121 AT1G26450 Carbohydrate-binding X8 domain superfamily protein -0.64 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
122 C0111 Hexa-2-O-glycerol-β-galactopyranoside Hexa-2-O-gllycerol-β-D-galactopyranoside - - -0.79 0.44 -0.44
123 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		-0.78 0.47 -0.43 C0109
124 C0225 Raffinose D-(+)-Raffinose Raffinose ajugose biosynthesis II (galactinol-independent),
stachyose biosynthesis,
stachyose degradation 		-0.76 0.44 -0.46 C0225
125 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		-0.76 0.45 -0.45 C0057
126 C0054 Agmatine - Agmatine putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis 		-0.75 0.31 -0.32 C0054
127 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		-0.74 0.31 -0.32 C0137
128 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		-0.7 0.44 -0.45 C0056
129 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		-0.69 0.32 -0.32 C0260
130 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II -0.69 0.33 -0.3 C0097
131 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		-0.67 0.46 -0.43 C0032
132 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		-0.64 0.32 -0.31 C0022