AT4G08890 : -
Query Information
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AGICode AT4G08890
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G08890 transposable element gene 1 0.31 -0.32
2 AT3G21430 DNA binding ALWAYS EARLY 3, ARABIDOPSIS
THALIANA ALWAYS EARLY 3		 0.68 0.3 -0.31
3 AT5G65500 U-box domain-containing protein kinase family protein -0.6 0.3 -0.32
4 AT5G15480 C2H2-type zinc finger family protein -0.59 0.32 -0.31
5 AT2G11240 transposable element gene 0.55 0.31 -0.32
6 AT4G24020 NIN like protein 7 NIN like protein 7 -0.55 0.31 -0.31
7 AT4G02910 unknown protein; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.55 0.3 -0.3
8 AT5G10500 Kinase interacting (KIP1-like) family protein -0.54 0.33 -0.31
9 AT3G49450 F-box and associated interaction domains-containing protein -0.53 0.34 -0.32
10 AT2G30480 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.53 0.3 -0.3
11 AT5G11820 Plant self-incompatibility protein S1 family -0.53 0.31 -0.32
12 AT5G64590 BEST Arabidopsis thaliana protein match is: Putative
endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.52 0.32 -0.32
13 AT5G42840 Cysteine/Histidine-rich C1 domain family protein 0.52 0.32 -0.34
14 AT5G62480 glutathione S-transferase tau 9 glutathione S-transferase tau 9,
GLUTATHIONE S-TRANSFERASE 14,
GLUTATHIONE S-TRANSFERASE 14B,
glutathione S-transferase tau 9		 0.52 0.3 -0.31
15 AT1G50960 gibberellin 2-oxidase 7 ARABIDOPSIS THALIANA GIBBERELLIN
2-OXIDASE 7, gibberellin 2-oxidase
7		 -0.51 0.32 -0.32
16 AT4G16460 unknown protein; Has 58 Blast hits to 58 proteins in 23
species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 4;
Plants - 16; Viruses - 0; Other Eukaryotes - 8 (source:
NCBI BLink).		 -0.51 0.34 -0.31
17 AT4G08560 pumilio 15 pumilio 15, pumilio 15 -0.5 0.3 -0.33
18 AT1G36670 transposable element gene 0.5 0.31 -0.32
19 AT1G35150 General transcription factor 2-related zinc finger protein -0.5 0.32 -0.31
20 AT4G17505 Protein of Unknown Function (DUF239) 0.5 0.31 -0.3
21 AT3G16750 unknown protein; Has 4708 Blast hits to 1416 proteins in
195 species: Archae - 36; Bacteria - 1240; Metazoa - 1232;
Fungi - 406; Plants - 191; Viruses - 23; Other Eukaryotes -
1580 (source: NCBI BLink).		 -0.5 0.33 -0.32
22 AT3G42780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G09130.1); Has 5 Blast hits to
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.49 0.31 -0.32
23 AT3G28520 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.49 0.34 -0.32
24 AT4G20160 LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has
64917 Blast hits to 39974 proteins in 1949 species: Archae
- 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788;
Plants - 3193; Viruses - 275; Other Eukaryotes - 21353
(source: NCBI BLink).		 -0.49 0.33 -0.29
25 AT1G31520 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.48 0.3 -0.31
26 AT2G16250 Leucine-rich repeat protein kinase family protein 0.48 0.33 -0.31
27 AT2G39790 Mitochondrial glycoprotein family protein -0.48 0.31 -0.32
28 AT1G56150 SAUR-like auxin-responsive protein family -0.48 0.33 -0.31
29 AT1G67780 Zinc-finger domain of monoamine-oxidase A repressor R1
protein		 -0.47 0.31 -0.31
30 AT2G16690 transposable element gene -0.47 0.31 -0.31
31 AT4G21430 Zinc finger, RING-type;Transcription factor
jumonji/aspartyl beta-hydroxylase		 B160 -0.46 0.31 -0.31
32 AT4G36170 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.46 0.3 -0.31
33 AT5G36190 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is: F-box
and associated interaction domains-containing protein
(TAIR:AT5G36200.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.46 0.33 -0.32
34 AT4G10410 Leucine-rich repeat (LRR) family protein -0.45 0.32 -0.31
35 ATCG00730 photosynthetic electron transfer D photosynthetic electron transfer D -0.45 0.29 -0.32
36 AT5G64610 histone acetyltransferase of the MYST family 1 histone acetyltransferase of the
MYST family 1		 -0.45 0.31 -0.32
37 AT1G53020 UBC26 (UBIQUITIN-CONJUGATING ENZYME 26); ubiquitin-protein
ligase		 HO2 FAMILY UBIQUITIN CONJUGATION
ENZYME 3, ubiquitin-conjugating
enzyme 26		 -0.45 0.32 -0.3
38 AT5G45190 Cyclin family protein -0.45 0.31 -0.31
39 AT2G16960 ARM repeat superfamily protein -0.44 0.34 -0.33
40 AT1G20520 Arabidopsis protein of unknown function (DUF241) -0.44 0.33 -0.32
41 AT4G02720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.44 0.33 -0.32
42 AT3G43050 transposable element gene 0.44 0.3 -0.33
43 AT1G51480 Disease resistance protein (CC-NBS-LRR class) family -0.44 0.31 -0.32
44 AT2G06180 transposable element gene 0.43 0.33 -0.3
45 AT3G55550 Concanavalin A-like lectin protein kinase family protein 0.41 0.31 -0.29
46 AT5G23970 HXXXD-type acyl-transferase family protein 0.4 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
47 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		-0.74 0.45 -0.45 C0091
48 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		-0.74 0.45 -0.47 C0087
49 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		-0.73 0.44 -0.45 C0262
50 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis -0.72 0.43 -0.42 C0234
51 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) -0.69 0.43 -0.42 C0075
52 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		-0.69 0.43 -0.45 C0027
53 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) -0.68 0.43 -0.43 C0099
54 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		-0.68 0.46 -0.44 C0261
55 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III -0.66 0.45 -0.45 C0195
56 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		-0.65 0.47 -0.39 C0011
57 C0006 β-Homothreonine L-β-Homothreonine - - -0.65 0.45 -0.41
58 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		-0.63 0.41 -0.45 C0015
59 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		-0.63 0.44 -0.46 C0186
60 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis -0.63 0.39 -0.41
61 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		-0.61 0.45 -0.45 C0088
62 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.59 0.49 -0.47 C0073
63 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		-0.54 0.31 -0.31 C0005
64 C0062 Betain - - - -0.49 0.31 -0.32