AT4G01790 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G01790
Description Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G01790 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 1 0.31 -0.29
2 AT1G62150 Mitochondrial transcription termination factor family
protein		 0.79 0.31 -0.31
3 AT1G47250 20S proteasome alpha subunit F2 20S proteasome alpha subunit F2 0.78 0.32 -0.35
4 AT3G55170 Ribosomal L29 family protein 0.76 0.3 -0.31
5 AT1G68370 Chaperone DnaJ-domain superfamily protein ALTERED RESPONSE TO GRAVITY 1 0.76 0.31 -0.3
6 AT1G65290 mitochondrial acyl carrier protein 2 mitochondrial acyl carrier protein
2		 0.75 0.33 -0.33
7 AT5G16320 FRIGIDA like 1 FRIGIDA like 1 0.75 0.29 -0.32
8 AT5G05750 DNAJ heat shock N-terminal domain-containing protein 0.74 0.32 -0.32
9 AT1G02360 Chitinase family protein 0.73 0.32 -0.3
10 AT1G59830 protein phosphatase 2A-2 protein phosphatase 2A-2 0.7 0.31 -0.32
11 AT3G53260 phenylalanine ammonia-lyase 2 ATPAL2, phenylalanine
ammonia-lyase 2		 0.7 0.31 -0.31
12 AT1G48840 Plant protein of unknown function (DUF639) -0.7 0.32 -0.32
13 AT5G27990 Pre-rRNA-processing protein TSR2, conserved region 0.7 0.32 -0.31
14 AT3G53880 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C11		 0.69 0.31 -0.33
15 AT5G38630 cytochrome B561-1 cytochrome B561-1, cytochrome
B561-1		 0.69 0.32 -0.32
16 AT1G64700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 11 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.32 -0.34
17 AT4G34030 3-methylcrotonyl-CoA carboxylase 3-methylcrotonyl-CoA carboxylase -0.68 0.32 -0.33
18 AT2G22520 unknown protein; Has 186 Blast hits to 37 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4;
Plants - 17; Viruses - 0; Other Eukaryotes - 165 (source:
NCBI BLink).		 0.68 0.31 -0.31
19 AT1G43170 ribosomal protein 1 ribosomal protein 1, embryo
defective 2207, ribosomal protein
1, RPL3A		 0.68 0.34 -0.3
20 AT3G57820 60S ribosomal protein L21 (RPL21F), pseudogene, 60S
RIBOSOMAL PROTEIN L21 - Arabidopsis thaliana,
SWISSPROT:RL21_ARATH; blastp match of 75% identity and
2.5e-15 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S
ribosomal protein L21 {Oryza sativa}		 0.67 0.32 -0.31
21 AT4G37445 BEST Arabidopsis thaliana protein match is: Calcium-binding
EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.67 0.33 -0.31
22 AT1G64490 DEK, chromatin associated protein 0.67 0.33 -0.32
23 AT1G62830 LSD1-like 1 ARABIDOPSIS LYSINE-SPECIFIC
HISTONE DEMETHYLASE, ATSWP1,
LSD1-like 1, LYSINE-SPECIFIC
HISTONE DEMETHYLASE, SWP1		 0.67 0.31 -0.31
24 AT1G64190 6-phosphogluconate dehydrogenase family protein 0.67 0.33 -0.3
25 AT4G09420 Disease resistance protein (TIR-NBS class) 0.66 0.32 -0.32
26 AT1G59900 pyruvate dehydrogenase complex E1 alpha subunit pyruvate dehydrogenase complex E1
alpha subunit, pyruvate
dehydrogenase complex E1 alpha
subunit		 0.66 0.31 -0.31
27 AT1G52840 transposable element gene 0.65 0.3 -0.31
28 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 -0.65 0.29 -0.31
29 AT5G35180 Protein of unknown function (DUF1336) -0.65 0.33 -0.32
30 AT5G15900 TRICHOME BIREFRINGENCE-LIKE 19 TRICHOME BIREFRINGENCE-LIKE 19 0.64 0.29 -0.31
31 AT5G27950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.64 0.33 -0.37
32 AT1G49950 telomere repeat binding factor 1 TELOMERE REPEAT BINDING FACTOR 1,
telomere repeat binding factor 1		 0.64 0.32 -0.31
33 AT3G58450 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.64 0.3 -0.29
34 AT5G03345 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Magnesium transporter (InterPro:IPR018937); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.64 0.33 -0.34
35 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 -0.64 0.31 -0.32
36 AT5G05890 UDP-Glycosyltransferase superfamily protein 0.64 0.31 -0.31
37 AT1G55450 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.63 0.32 -0.31
38 AT2G28960 Leucine-rich repeat protein kinase family protein 0.63 0.32 -0.31
39 AT5G05270 Chalcone-flavanone isomerase family protein 0.63 0.32 -0.32
40 AT1G61730 DNA-binding storekeeper protein-related transcriptional
regulator		 0.63 0.3 -0.34
41 AT4G19240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits
to 17 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.32 -0.32
42 AT5G42450 Pentatricopeptide repeat (PPR) superfamily protein 0.62 0.29 -0.33
43 AT1G23880 NHL domain-containing protein -0.62 0.33 -0.33
44 AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein -0.62 0.32 -0.29
45 AT5G20580 BEST Arabidopsis thaliana protein match is: FRIGIDA
interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast
hits to 167 proteins in 73 species: Archae - 0; Bacteria -
25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 0.62 0.31 -0.31
46 AT1G74320 Protein kinase superfamily protein 0.62 0.3 -0.3
47 AT1G33980 Smg-4/UPF3 family protein ATUPF3, UPF3 -0.62 0.31 -0.32
48 ATCG00580 photosystem II reaction center protein E photosystem II reaction center
protein E		 -0.62 0.3 -0.32
49 AT5G27110 Tetratricopeptide repeat (TPR)-like superfamily protein 0.62 0.31 -0.33
50 AT5G54140 IAA-leucine-resistant (ILR1)-like 3 IAA-leucine-resistant (ILR1)-like
3		 0.62 0.31 -0.31
51 AT5G23230 nicotinamidase 2 nicotinamidase 2 0.62 0.32 -0.31
52 AT4G05450 mitochondrial ferredoxin 1 ARABIDOPSIS MITOCHONDRIAL
FERREDOXIN 1, mitochondrial
ferredoxin 1		 0.62 0.3 -0.31
53 AT4G02450 HSP20-like chaperones superfamily protein 0.61 0.32 -0.31
54 AT4G11100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03060.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.61 0.33 -0.32
55 AT1G36000 LOB domain-containing protein 5 LOB domain-containing protein 5 0.61 0.31 -0.34
56 AT1G66620 Protein with RING/U-box and TRAF-like domains 0.61 0.33 -0.3
57 AT1G58170 Disease resistance-responsive (dirigent-like protein)
family protein		 0.61 0.31 -0.29
58 AT5G08565 Transcription initiation Spt4-like protein 0.61 0.3 -0.3
59 AT1G63880 Disease resistance protein (TIR-NBS-LRR class) family 0.6 0.31 -0.3
60 AT3G53710 ARF-GAP domain 6 ARF-GAP domain 6 0.6 0.3 -0.33
61 AT4G12110 sterol-4alpha-methyl oxidase 1-1 ATSMO1-1, sterol-4alpha-methyl
oxidase 1-1		 0.6 0.34 -0.34
62 AT5G23760 Copper transport protein family 0.6 0.31 -0.31
63 AT4G18920 Protein of unknown function (DUF1264) 0.6 0.31 -0.31
64 AT5G49630 amino acid permease 6 amino acid permease 6 0.6 0.3 -0.3
65 AT1G45160 Protein kinase superfamily protein -0.6 0.31 -0.34
66 AT5G15980 Pentatricopeptide repeat (PPR) superfamily protein 0.6 0.33 -0.3
67 AT5G36930 Disease resistance protein (TIR-NBS-LRR class) family 0.6 0.31 -0.31
68 AT4G30410 sequence-specific DNA binding transcription factors 0.59 0.3 -0.31
69 AT4G14050 Pentatricopeptide repeat (PPR) superfamily protein 0.59 0.31 -0.31
70 AT3G23590 REF4-related 1 MED33A, REF4-related 1 -0.59 0.3 -0.3
71 ATMG00060 NADH dehydrogenase subunit 5C NADH DEHYDROGENASE SUBUNIT 5, NADH
DEHYDROGENASE SUBUNIT 5.3, NADH
dehydrogenase subunit 5C		 -0.59 0.32 -0.32
72 AT5G25370 phospholipase D alpha 3 phospholipase D alpha 3 0.59 0.32 -0.3
73 AT3G61720 Ca2+dependent plant phosphoribosyltransferase family
protein		 0.59 0.31 -0.3
74 AT5G04270 DHHC-type zinc finger family protein 0.59 0.31 -0.31
75 AT5G47560 tonoplast dicarboxylate transporter ATSDAT, TONOPLAST DICARBOXYLATE
TRANSPORTER, tonoplast
dicarboxylate transporter		 -0.59 0.33 -0.3
76 AT4G01130 GDSL-like Lipase/Acylhydrolase superfamily protein 0.59 0.31 -0.33
77 AT1G27590 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana
protein match is: phosphatidylinositol 3- and 4-kinase
family protein (TAIR:AT1G27570.1); Has 109 Blast hits to
109 proteins in 38 species: Archae - 0; Bacteria - 0;
Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.59 0.3 -0.32
78 AT1G62914 pentatricopeptide (PPR) repeat-containing protein -0.59 0.32 -0.32
79 AT4G16515 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 6 0.59 0.33 -0.33
80 AT5G38150 Plant protein of unknown function (DUF827) plastid movement impaired 15 -0.59 0.32 -0.34
81 AT1G54120 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits
to 23 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.32 -0.31
82 AT2G37720 TRICHOME BIREFRINGENCE-LIKE 15 TRICHOME BIREFRINGENCE-LIKE 15 0.59 0.32 -0.33
83 ATCG00550 photosystem II reaction center protein J photosystem II reaction center
protein J		 -0.58 0.31 -0.32
84 AT5G56570 Leucine-rich repeat (LRR) family protein -0.58 0.32 -0.31
85 AT4G27670 heat shock protein 21 heat shock protein 21 -0.58 0.32 -0.32
86 AT2G25080 glutathione peroxidase 1 GLUTATHIONE PEROXIDASE 1,
glutathione peroxidase 1		 -0.57 0.32 -0.31
87 AT1G19390 Wall-associated kinase family protein -0.57 0.32 -0.33
88 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.56 0.3 -0.31
89 AT4G34640 squalene synthase 1 ERG9, squalene synthase 1 -0.56 0.32 -0.3
90 AT4G18395 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.56 0.31 -0.3
91 AT3G25840 Protein kinase superfamily protein -0.56 0.32 -0.34
92 AT4G08160 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein		 -0.56 0.31 -0.34
93 AT5G57790 unknown protein; Has 13 Blast hits to 11 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.56 0.32 -0.31
94 AT1G31650 RHO guanyl-nucleotide exchange factor 14 ATROPGEF14, RHO guanyl-nucleotide
exchange factor 14		 -0.56 0.32 -0.35
95 AT1G68750 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4,
phosphoenolpyruvate carboxylase 4		 -0.55 0.33 -0.3
96 AT1G48310 chromatin remodeling factor18 CHA18, chromatin remodeling
factor18		 -0.54 0.31 -0.32
97 AT5G35470 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.54 0.31 -0.32
98 AT5G09930 ABC transporter family protein ATP-binding cassette F2 -0.54 0.32 -0.32
99 AT1G68760 nudix hydrolase 1 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 1, nudix
hydrolase 1, nudix hydrolase 1,
NUDIX HYDROLASE 1		 -0.54 0.32 -0.31
100 AT5G15360 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.53 0.32 -0.33
101 AT3G61600 POZ/BTB containin G-protein 1 POZ/BTB containin G-protein 1,
POZ/BTB containin G-protein 1		 -0.53 0.31 -0.31
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
102 C0038 5-(Methylthio)pentylglucosinolate - 5-Methylthiopentylglucosinolate glucosinolate biosynthesis from trihomomethionine 0.81 0.43 -0.46 C0038
103 C0034 4-Methylthio-n-butylglucosinolate - 4-Methylthiobutyl glucosinolate glucosinolate biosynthesis from dihomomethionine 0.74 0.31 -0.31 C0034
104 C0178 MST_2446.7 - - - -0.71 0.46 -0.46
105 C0244 Sucrose D-Sucrose Sucrose stachyose biosynthesis,
fructan degradation,
stachyose degradation,
galactose degradation III,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
sucrose degradation III,
UDP-glucose biosynthesis (from sucrose),
ajugose biosynthesis II (galactinol-independent),
sucrose biosynthesis I 		0.63 0.32 -0.29 C0244