AT4G01910 : -
Query Information
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AGICode AT4G01910
Description Cysteine/Histidine-rich C1 domain family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G01910 Cysteine/Histidine-rich C1 domain family protein 1 0.34 -0.34
2 AT5G15980 Pentatricopeptide repeat (PPR) superfamily protein 0.68 0.28 -0.32
3 AT4G05460 RNI-like superfamily protein 0.62 0.32 -0.3
4 AT5G38210 Protein kinase family protein 0.61 0.31 -0.31
5 AT3G06433 pseudogene of nodulin MtN3 family protein 0.6 0.28 -0.32
6 AT4G08110 transposable element gene 0.6 0.32 -0.32
7 AT1G52770 Phototropic-responsive NPH3 family protein -0.59 0.31 -0.33
8 AT5G35450 Disease resistance protein (CC-NBS-LRR class) family 0.59 0.33 -0.32
9 AT2G24660 transposable element gene -0.59 0.34 -0.31
10 AT1G33130 transposable element gene -0.58 0.31 -0.31
11 AT1G64490 DEK, chromatin associated protein 0.58 0.29 -0.32
12 AT5G41620 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast, plasma
membrane; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: 6 growth stages; BEST Arabidopsis thaliana protein
match is: intracellular protein transport protein
USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.57 0.31 -0.31
13 AT2G34090 maternal effect embryo arrest 18 maternal effect embryo arrest 18 -0.57 0.34 -0.31
14 AT4G05050 ubiquitin 11 ubiquitin 11 0.57 0.32 -0.33
15 AT1G65280 DNAJ heat shock N-terminal domain-containing protein 0.57 0.33 -0.31
16 AT5G39990 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.56 0.34 -0.33
17 AT5G05760 syntaxin of plants 31 ATSED5, ATSYP31, T-SNARE SED 5,
syntaxin of plants 31		 0.56 0.35 -0.32
18 AT4G13630 Protein of unknown function, DUF593 0.55 0.3 -0.31
19 AT1G58160 Mannose-binding lectin superfamily protein 0.55 0.33 -0.3
20 AT4G03050 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 AOP3 -0.55 0.31 -0.29
21 AT4G02540 Cysteine/Histidine-rich C1 domain family protein 0.55 0.32 -0.33
22 AT4G25710 Galactose oxidase/kelch repeat superfamily protein 0.55 0.32 -0.32
23 AT1G66540 Cytochrome P450 superfamily protein 0.55 0.33 -0.3
24 AT4G00110 UDP-D-glucuronate 4-epimerase 3 UDP-D-glucuronate 4-epimerase 3 0.54 0.32 -0.32
25 AT1G59960 NAD(P)-linked oxidoreductase superfamily protein 0.54 0.32 -0.32
26 AT5G03200 RING/U-box superfamily protein 0.54 0.3 -0.32
27 AT1G67550 urease urease 0.53 0.3 -0.32
28 AT2G05350 unknown protein; Has 22 Blast hits to 16 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.53 0.31 -0.31
29 AT5G28030 L-cysteine desulfhydrase 1 L-cysteine desulfhydrase 1 -0.53 0.33 -0.32
30 AT4G03820 Protein of unknown function (DUF3537) 0.52 0.33 -0.33
31 AT1G15100 RING-H2 finger A2A RING-H2 finger A2A 0.52 0.32 -0.32
32 AT4G01860 Transducin family protein / WD-40 repeat family protein 0.51 0.33 -0.3
33 AT2G24190 NAD(P)-binding Rossmann-fold superfamily protein short-chain
dehydrogenase/reductase 2		 0.51 0.32 -0.31
34 AT4G36690 U2 snRNP auxilliary factor, large subunit, splicing factor ATU2AF65A -0.51 0.31 -0.3
35 AT5G58110 chaperone binding;ATPase activators 0.51 0.3 -0.34
36 AT4G29800 PATATIN-like protein 8 PLA IVD, PATATIN-like protein 8 0.51 0.29 -0.31
37 AT4G09080 Outer membrane OMP85 family protein TRANSLOCON OUTER MEMBRANE COMPLEX
75-IV, translocon at the outer
envelope membrane of chloroplasts
75-IV		 -0.5 0.3 -0.34
38 AT1G36550 transposable element gene 0.5 0.31 -0.31
39 AT2G40580 Protein kinase superfamily protein -0.49 0.3 -0.29
40 AT4G07400 VIER F-box proteine 3 VIER F-box proteine 3 -0.49 0.32 -0.34
41 AT5G54640 Histone superfamily protein ATHTA1, histone H2A 1, RESISTANT
TO AGROBACTERIUM TRANSFORMATION 5		 -0.49 0.31 -0.32
42 AT5G02100 Oxysterol-binding family protein OSBP(OXYSTEROL BINDING
PROTEIN)-RELATED PROTEIN 3A,
UNFERTILIZED EMBRYO SAC 18		 0.49 0.32 -0.28
43 ATMG00890 hypothetical protein ORF106D 0.48 0.31 -0.31
44 AT4G00335 RING-H2 finger B1A RING-H2 finger B1A -0.48 0.34 -0.3
45 AT1G11960 ERD (early-responsive to dehydration stress) family protein -0.47 0.32 -0.32
46 AT3G24770 CLAVATA3/ESR-RELATED 41 CLAVATA3/ESR-RELATED 41 -0.45 0.31 -0.32
47 AT5G66950 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.45 0.31 -0.32
48 AT4G27150 seed storage albumin 2 AT2S2, seed storage albumin 2 -0.45 0.32 -0.32
49 AT1G36100 myosin heavy chain-related 0.45 0.32 -0.32
50 AT1G60030 nucleobase-ascorbate transporter 7 ARABIDOPSIS NUCLEOBASE-ASCORBATE
TRANSPORTER 7,
nucleobase-ascorbate transporter 7		 -0.45 0.29 -0.32
51 AT4G00980 zinc knuckle (CCHC-type) family protein 0.44 0.32 -0.33
52 AT2G46310 cytokinin response factor 5 cytokinin response factor 5 -0.44 0.32 -0.31
53 AT2G23210 UDP-Glycosyltransferase superfamily protein -0.44 0.34 -0.32
54 AT2G15380 transposable element gene -0.44 0.33 -0.32
55 AT4G20160 LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has
64917 Blast hits to 39974 proteins in 1949 species: Archae
- 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788;
Plants - 3193; Viruses - 275; Other Eukaryotes - 21353
(source: NCBI BLink).		 0.44 0.33 -0.32
56 AT3G58860 F-box/RNI-like superfamily protein -0.43 0.34 -0.34
57 AT3G25600 Calcium-binding EF-hand family protein -0.43 0.36 -0.31
58 AT1G79370 cytochrome P450, family 79, subfamily C, polypeptide 1 cytochrome P450, family 79,
subfamily C, polypeptide 1		 -0.43 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
59 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.8 0.46 -0.47 C0262
60 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.8 0.46 -0.44 C0088
61 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.8 0.43 -0.43 C0261
62 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		0.78 0.45 -0.43 C0186
63 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		0.77 0.45 -0.45 C0027
64 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.77 0.48 -0.47
65 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.75 0.45 -0.43 C0091
66 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.75 0.43 -0.45 C0234
67 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.75 0.41 -0.4 C0053
68 C0026 2-Hydroxyisobutyric acid - - β oxidation 0.73 0.44 -0.43
69 C0178 MST_2446.7 - - - -0.73 0.44 -0.43
70 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.73 0.42 -0.45 C0099
71 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.72 0.44 -0.43 C0075
72 C0153 Monogalactosyldiacylgycerol-34:6 - a Monogalactosyldiacylgycerol glycolipid biosynthesis,
triacylglycerol degradation,
linoleate biosynthesis I,
glutathione redox reactions I 		-0.71 0.45 -0.46 C0153
73 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.7 0.41 -0.46 C0087
74 C0006 β-Homothreonine L-β-Homothreonine - - 0.69 0.45 -0.43
75 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.67 0.42 -0.48 C0030
76 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III 0.58 0.43 -0.46 C0195