AT3G19540 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G19540
Description Protein of unknown function (DUF620)
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G19540 Protein of unknown function (DUF620) 1 0.31 -0.32
2 AT5G43560 TRAF-like superfamily protein -0.74 0.31 -0.32
3 AT4G39570 Galactose oxidase/kelch repeat superfamily protein 0.71 0.32 -0.32
4 AT4G13250 NAD(P)-binding Rossmann-fold superfamily protein NON-YELLOW COLORING 1 -0.7 0.32 -0.32
5 AT2G22890 Kua-ubiquitin conjugating enzyme hybrid localisation domain 0.7 0.32 -0.3
6 AT2G13560 NAD-dependent malic enzyme 1 NAD-dependent malic enzyme 1 -0.68 0.3 -0.32
7 AT5G17350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.67 0.31 -0.32
8 AT5G13100 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.67 0.33 -0.32
9 AT5G15910 NAD(P)-binding Rossmann-fold superfamily protein -0.67 0.34 -0.32
10 AT1G08190 vacuolar protein sorting 41 ATVAM2, VACUOLAR PROTEIN SORTING
41, VAM2, vacuolar protein sorting
41, ZIGZAG SUPPRESSOR 2		 -0.67 0.32 -0.33
11 AT5G16210 HEAT repeat-containing protein -0.66 0.32 -0.32
12 AT3G16170 AMP-dependent synthetase and ligase family protein acyl activating enzyme 13 -0.66 0.3 -0.31
13 AT3G09560 Lipin family protein PHOSPHATIDIC ACID PHOSPHOHYDROLASE
1, PHOSPHATIDIC ACID
PHOSPHOHYDROLASE 1		 -0.65 0.3 -0.33
14 AT3G19170 presequence protease 1 presequence protease 1, ATZNMP,
presequence protease 1		 -0.65 0.31 -0.31
15 AT1G32130 Transcription elongation factor (TFIIS) family protein ARABIDOPSIS THALIANA IWS1 (FROM
YEAST INTERACTS WITH SPT6), HIGH
NITROGEN INSENSITIVE 9, IWS1		 -0.65 0.32 -0.31
16 AT1G10940 Protein kinase superfamily protein ARABIDOPSIS SERINE/THREONINE
KINASE 1, SUCROSE NONFERMENTING
1-RELATED PROTEIN KINASE 2-4,
SNF1-related protein kinase 2.4,
SRK2A		 -0.65 0.31 -0.32
17 AT5G50330 Protein kinase superfamily protein -0.64 0.3 -0.3
18 AT2G07200 Cysteine proteinases superfamily protein -0.64 0.31 -0.31
19 AT3G07410 RAB GTPase homolog A5B RAB GTPase homolog A5B, RAB GTPase
homolog A5B		 0.64 0.34 -0.33
20 AT3G50060 myb domain protein 77 myb domain protein 77 0.64 0.31 -0.33
21 AT2G35050 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.64 0.33 -0.32
22 AT5G65420 CYCLIN D4;1 CYCLIN D4;1 0.64 0.32 -0.32
23 AT3G50070 CYCLIN D3;3 CYCLIN D3;3 0.63 0.32 -0.31
24 AT1G49840 Protein of unknown function (DUF620) 0.63 0.32 -0.3
25 AT4G00900 ER-type Ca2+-ATPase 2 ARABIDOPSIS THALIANA ER-TYPE
CA2+-ATPASE 2, ER-type Ca2+-ATPase
2		 -0.62 0.32 -0.31
26 AT2G41010 calmodulin (CAM)-binding protein of 25 kDa calmodulin (CAM)-binding protein
of 25 kDa, calmodulin
(CAM)-binding protein of 25 kDa		 0.62 0.31 -0.3
27 AT4G37760 squalene epoxidase 3 squalene epoxidase 3 -0.62 0.31 -0.32
28 AT4G22140 PHD finger family protein / bromo-adjacent homology (BAH)
domain-containing protein		 EARLY BOLTING IN SHORT DAYS 0.62 0.32 -0.29
29 AT1G72950 Disease resistance protein (TIR-NBS class) 0.61 0.31 -0.33
30 AT5G41000 YELLOW STRIPE like 4 YELLOW STRIPE like 4 0.61 0.3 -0.31
31 AT3G61220 NAD(P)-binding Rossmann-fold superfamily protein short-chain
dehydrogenase/reductase 1		 -0.61 0.33 -0.32
32 AT3G15530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.61 0.32 -0.33
33 AT4G17530 RAB GTPase homolog 1C RAB GTPase homolog 1C, ATRABD2C,
RAB1C, RAB GTPase homolog 1C		 -0.61 0.31 -0.32
34 AT5G17450 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 21		 -0.6 0.31 -0.32
35 AT2G32810 beta galactosidase 9 beta galactosidase 9,
beta-galactosidase 9		 -0.6 0.31 -0.33
36 AT5G23110 Zinc finger, C3HC4 type (RING finger) family protein -0.59 0.3 -0.31
37 AT3G04030 Homeodomain-like superfamily protein -0.59 0.3 -0.29
38 AT3G03790 ankyrin repeat family protein / regulator of chromosome
condensation (RCC1) family protein		 -0.59 0.31 -0.31
39 AT5G43890 Flavin-binding monooxygenase family protein SUPPRESSOR OF ER 1, YUCCA5 0.59 0.3 -0.31
40 AT4G16845 VEFS-Box of polycomb protein REDUCED VERNALIZATION RESPONSE 2 -0.59 0.32 -0.3
41 AT2G32700 LEUNIG_homolog LEUNIG_homolog, MUCILAGE-MODIFIED
1		 -0.59 0.31 -0.29
42 AT5G11070 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.59 0.31 -0.28
43 AT2G48030 DNAse I-like superfamily protein -0.59 0.33 -0.3
44 AT2G26710 Cytochrome P450 superfamily protein PHYB ACTIVATION TAGGED SUPPRESSOR
1, CYP72B1, CYP734A1		 0.59 0.31 -0.31
45 AT1G67790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G01680.1); Has 208 Blast hits
to 125 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.59 0.3 -0.32
46 AT5G61600 ethylene response factor 104 ethylene response factor 104 0.59 0.31 -0.32
47 AT1G19200 Protein of unknown function (DUF581) -0.58 0.31 -0.3
48 AT5G64400 CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST
Arabidopsis thaliana protein match is: Cox19-like CHCH
family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.58 0.31 -0.3
49 AT1G49470 Family of unknown function (DUF716) -0.58 0.32 -0.3
50 AT2G32260 phosphorylcholine cytidylyltransferase ATCCT1, phosphorylcholine
cytidylyltransferase		 -0.58 0.33 -0.3
51 AT5G60230 splicing endonuclease 2 SPLICING ENDONUCLEASE 2, splicing
endonuclease 2		 0.58 0.31 -0.31
52 AT1G52540 Protein kinase superfamily protein -0.58 0.31 -0.3
53 AT1G27360 squamosa promoter-like 11 squamosa promoter-like 11 -0.58 0.31 -0.34
54 AT1G68330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G48780.1); Has 155 Blast hits
to 147 proteins in 23 species: Archae - 0; Bacteria - 0;
Metazoa - 19; Fungi - 3; Plants - 126; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 0.57 0.34 -0.33
55 AT5G03970 F-box associated ubiquitination effector family protein 0.57 0.32 -0.31
56 AT5G40460 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits
to 87 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.57 0.34 -0.3
57 AT3G26730 RING/U-box superfamily protein -0.57 0.32 -0.31
58 ATMG00650 NADH dehydrogenase subunit 4L NADH dehydrogenase subunit 4L -0.57 0.32 -0.34
59 AT4G11160 Translation initiation factor 2, small GTP-binding protein -0.57 0.33 -0.32
60 AT1G75190 unknown protein; Has 7306 Blast hits to 3858 proteins in
279 species: Archae - 15; Bacteria - 134; Metazoa - 3314;
Fungi - 546; Plants - 228; Viruses - 207; Other Eukaryotes
- 2862 (source: NCBI BLink).		 0.57 0.33 -0.29
61 AT3G09870 SAUR-like auxin-responsive protein family 0.57 0.31 -0.31
62 AT2G29660 zinc finger (C2H2 type) family protein 0.57 0.3 -0.33
63 AT1G30370 alpha/beta-Hydrolases superfamily protein DAD1-like acylhydrolase 0.57 0.33 -0.31
64 AT1G68840 related to ABI3/VP1 2 AtRAV2, ETHYLENE RESPONSE DNA
BINDING FACTOR 2, RELATED TO AP2
8, related to ABI3/VP1 2,
TEMPRANILLO 2		 0.56 0.32 -0.31
65 AT4G39320 microtubule-associated protein-related 0.56 0.33 -0.3
66 AT1G13110 cytochrome P450, family 71 subfamily B, polypeptide 7 cytochrome P450, family 71
subfamily B, polypeptide 7		 0.56 0.29 -0.29
67 AT3G23460 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.56 0.31 -0.31
68 AT5G44060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.56 0.3 -0.35
69 AT2G01670 nudix hydrolase homolog 17 nudix hydrolase homolog 17, nudix
hydrolase homolog 17		 0.56 0.31 -0.3
70 AT2G25250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G32020.1); Has 30 Blast
hits to 30 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 2; Plants - 28; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.55 0.31 -0.32
71 AT1G09575 Protein of unknown function (DUF607) 0.55 0.32 -0.31
72 AT5G46710 PLATZ transcription factor family protein 0.55 0.34 -0.28
73 AT4G38940 Galactose oxidase/kelch repeat superfamily protein 0.55 0.34 -0.31
74 AT5G49050 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
response to stress; LOCATED IN: cellular_component unknown;
CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016),
Rossmann-like alpha/beta/alpha sandwich fold
(InterPro:IPR014729); BEST Arabidopsis thaliana protein
match is: Adenine nucleotide alpha hydrolases-like
superfamily protein (TAIR:AT2G47710.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.55 0.32 -0.29
75 AT4G32120 Galactosyltransferase family protein 0.54 0.3 -0.33
76 AT5G59450 GRAS family transcription factor 0.54 0.32 -0.32
77 AT4G37770 1-amino-cyclopropane-1-carboxylate synthase 8 1-amino-cyclopropane-1-carboxylate
synthase 8		 0.54 0.31 -0.33
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
78 C0220 Pyruvic acid - Pyruvate sucrose degradation to ethanol and lactate (anaerobic),
alanine degradation II (to D-lactate),
alanine degradation III,
glutamine biosynthesis III,
pyruvate fermentation to ethanol II,
serine racemization,
methylerythritol phosphate pathway,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
valine biosynthesis,
seleno-amino acid biosynthesis,
phenylalanine degradation III,
an electron-transfer-related quinone + D-lactate -> an electron-transfer-related quinol + pyruvate,
tetrahydrofolate biosynthesis II,
methylglyoxal degradation I,
glycolysis I,
tryptophan biosynthesis,
salicylate biosynthesis I,
pyruvate fermentation to lactate,
methionine biosynthesis II,
glutathione-mediated detoxification II,
IAA biosynthesis I,
TCA cycle variation V (plant),
Rubisco shunt,
gluconeogenesis I,
acetaldehyde biosynthesis I,
homocysteine and cysteine interconversion,
glycolysis IV (plant cytosol),
4-aminobutyrate degradation IV,
beta-alanine biosynthesis II,
isoleucine biosynthesis I (from threonine),
glutamate degradation IV,
lysine biosynthesis VI,
acetyl-CoA biosynthesis (from pyruvate),
alanine biosynthesis II 		-0.77 0.46 -0.45 C0220
79 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) -0.7 0.44 -0.43 C0099
80 C0026 2-Hydroxyisobutyric acid - - β oxidation -0.69 0.44 -0.44
81 C0095 Galacturonic acid D-Galacturonic acid D-Galacturonate UDP-D-galacturonate biosynthesis II (from D-galacturonate) -0.66 0.33 -0.3 C0095
82 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis -0.65 0.44 -0.43
83 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.63 0.44 -0.42 C0073
84 C0187 Neoeriocitrin - - - 0.62 0.44 -0.46
85 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		-0.6 0.43 -0.45 C0186
86 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		-0.59 0.42 -0.41 C0027
87 C0243 Succinic acid - Succinate flavonol biosynthesis,
glyoxylate cycle,
gibberellin biosynthesis III (early C-13 hydroxylation),
TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
aerobic respiration (alternative oxidase pathway),
gibberellin inactivation I (2beta-hydroxylation),
4-aminobutyrate degradation IV,
luteolin biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
leucodelphinidin biosynthesis,
glutamate degradation IV,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
succinate + a ubiquinone -> a ubiquinol + fumarate,
gibberellin biosynthesis II (early C-3 hydroxylation),
flavonoid biosynthesis,
superpathway of glyoxylate cycle and fatty acid degradation,
aerobic respiration (cytochrome c),
leucopelargonidin and leucocyanidin biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
scopoletin biosynthesis 		-0.58 0.3 -0.32 C0243