AT1G54230 : -
Query Information
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AGICode AT1G54230
Description Winged helix-turn-helix transcription repressor DNA-binding
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G54230 Winged helix-turn-helix transcription repressor DNA-binding 1 0.3 -0.34
2 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 0.7 0.33 -0.29
3 AT5G45620 Proteasome component (PCI) domain protein -0.69 0.28 -0.32
4 AT5G02450 Ribosomal protein L36e family protein -0.69 0.29 -0.31
5 AT4G29070 Phospholipase A2 family protein 0.68 0.29 -0.31
6 AT5G61770 PETER PAN-like protein PETER PAN-like protein -0.68 0.3 -0.31
7 AT3G21140 Pyridoxamine 5'-phosphate oxidase family protein -0.68 0.33 -0.32
8 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.68 0.33 -0.33
9 AT1G54770 Fcf2 pre-rRNA processing protein -0.67 0.31 -0.32
10 AT1G69620 ribosomal protein L34 ribosomal protein L34 -0.66 0.34 -0.33
11 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 0.66 0.3 -0.31
12 AT2G17360 Ribosomal protein S4 (RPS4A) family protein -0.66 0.32 -0.32
13 AT5G06360 Ribosomal protein S8e family protein -0.66 0.32 -0.31
14 AT1G25260 Ribosomal protein L10 family protein -0.66 0.32 -0.29
15 AT1G54360 TBP-ASSOCIATED FACTOR 6B TBP-ASSOCIATED FACTOR 6B,
TBP-ASSOCIATED FACTOR 6B1,
TBP-ASSOCIATED FACTOR 6B2,
TBP-associated factor 6B4		 0.66 0.31 -0.31
16 AT2G25670 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928
proteins in 1799 species: Archae - 86; Bacteria - 6347;
Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses -
259; Other Eukaryotes - 13792 (source: NCBI BLink).		 -0.65 0.32 -0.32
17 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein -0.65 0.32 -0.32
18 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 -0.65 0.3 -0.31
19 AT3G07590 Small nuclear ribonucleoprotein family protein -0.65 0.29 -0.32
20 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 -0.64 0.33 -0.3
21 AT2G18740 Small nuclear ribonucleoprotein family protein -0.64 0.32 -0.32
22 AT3G53520 UDP-glucuronic acid decarboxylase 1 ATUXS1, UDP-glucuronic acid
decarboxylase 1		 -0.64 0.3 -0.33
23 AT3G51270 protein serine/threonine kinases;ATP binding;catalytics -0.64 0.31 -0.33
24 AT3G04130 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.31 -0.31
25 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 -0.64 0.32 -0.31
26 AT5G06210 RNA binding (RRM/RBD/RNP motifs) family protein -0.64 0.3 -0.32
27 AT1G51600 ZIM-LIKE 2 GATA TRANSCRIPTION FACTOR 28,
TIFY2A, ZIM-LIKE 2		 -0.63 0.3 -0.33
28 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 -0.63 0.32 -0.31
29 AT5G49540 Rab5-interacting family protein -0.63 0.33 -0.32
30 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 -0.63 0.32 -0.32
31 AT4G37190 LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation
binding site (InterPro:IPR013838), Misato Segment II,
myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746); Has 345 Blast hits to 341 proteins in
161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 -0.62 0.33 -0.31
32 AT5G39910 Pectin lyase-like superfamily protein 0.62 0.31 -0.32
33 AT2G37310 Pentatricopeptide repeat (PPR) superfamily protein -0.62 0.32 -0.33
34 AT3G15640 Rubredoxin-like superfamily protein -0.62 0.32 -0.32
35 AT5G28060 Ribosomal protein S24e family protein -0.62 0.31 -0.32
36 AT3G19630 Radical SAM superfamily protein -0.62 0.3 -0.34
37 AT5G53770 Nucleotidyltransferase family protein -0.62 0.29 -0.33
38 AT1G55150 DEA(D/H)-box RNA helicase family protein -0.62 0.34 -0.3
39 AT2G44510 CDK inhibitor P21 binding protein -0.62 0.32 -0.31
40 AT1G44990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 0.62 0.31 -0.31
41 AT1G22090 Protein of unknown function (DUF626) embryo defective 2204 0.62 0.32 -0.31
42 AT4G13940 S-adenosyl-L-homocysteine hydrolase S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE
1, EMBRYO DEFECTIVE 1395,
HOMOLOGY-DEPENDENT GENE SILENCING
1, MATERNAL EFFECT EMBRYO ARREST
58, S-ADENOSYL-L-HOMOCYSTEIN
HYDROLASE 1		 -0.61 0.32 -0.29
43 AT4G20890 tubulin beta-9 chain tubulin beta-9 chain -0.61 0.33 -0.31
44 AT1G74870 RING/U-box superfamily protein -0.61 0.31 -0.31
45 AT3G16950 lipoamide dehydrogenase 1 lipoamide dehydrogenase 1, ptlpd1 -0.61 0.3 -0.3
46 AT1G04510 MOS4-associated complex 3A MOS4-associated complex 3A -0.61 0.32 -0.33
47 AT5G35430 Tetratricopeptide repeat (TPR)-like superfamily protein -0.61 0.32 -0.32
48 AT1G78130 Major facilitator superfamily protein unfertilized embryo sac 2 0.61 0.32 -0.3
49 AT3G25940 TFIIB zinc-binding protein -0.6 0.31 -0.31
50 AT3G02220 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2039 (InterPro:IPR019351); Has 215
Blast hits to 215 proteins in 94 species: Archae - 2;
Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 -0.6 0.32 -0.33
51 AT4G26390 Pyruvate kinase family protein 0.6 0.3 -0.31
52 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family 0.6 0.33 -0.31
53 AT4G31580 serine/arginine-rich 22 RS-containing zinc finger protein
22, RS-containing zinc finger
protein 22, RS-CONTAINING ZINC
FINGER PROTEIN 22,
serine/arginine-rich 22, SRZ22		 -0.6 0.3 -0.31
54 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein 0.6 0.31 -0.32
55 AT4G25330 unknown protein; Has 21 Blast hits to 21 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.3 -0.31
56 AT2G15520 transposable element gene 0.59 0.32 -0.31
57 AT5G58230 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS MULTICOPY SUPRESSOR OF
IRA1, MATERNAL EFFECT EMBRYO
ARREST 70, MULTICOPY SUPRESSOR OF
IRA1		 -0.59 0.33 -0.33
58 AT5G63200 tetratricopeptide repeat (TPR)-containing protein 0.59 0.31 -0.32
59 AT4G39200 Ribosomal protein S25 family protein -0.59 0.3 -0.33
60 AT2G34250 SecY protein transport family protein -0.59 0.32 -0.34
61 AT5G49210 unknown protein; Has 3675 Blast hits to 2315 proteins in
312 species: Archae - 2; Bacteria - 342; Metazoa - 1190;
Fungi - 281; Plants - 114; Viruses - 4; Other Eukaryotes -
1742 (source: NCBI BLink).		 -0.59 0.34 -0.31
62 AT1G01990 unknown protein; Has 32 Blast hits to 32 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.3 -0.29
63 AT2G10465 transposable element gene 0.58 0.31 -0.32
64 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 -0.58 0.34 -0.29
65 AT4G08670 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.58 0.33 -0.32
66 AT4G13810 receptor like protein 47 receptor like protein 47, receptor
like protein 47		 0.58 0.32 -0.3
67 AT2G34970 Trimeric LpxA-like enzyme -0.57 0.32 -0.31
68 AT2G32890 RALF-like 17 RALF-like 17 0.57 0.29 -0.31
69 AT5G46210 cullin4 ATCUL4, cullin4 -0.57 0.32 -0.32
70 AT5G66820 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 -0.57 0.28 -0.31
71 AT3G60920 CONTAINS InterPro DOMAIN/s: Beige/BEACH
(InterPro:IPR000409); BEST Arabidopsis thaliana protein
match is: WD-40 repeat family protein / beige-related
(TAIR:AT2G45540.1); Has 1795 Blast hits to 1563 proteins in
214 species: Archae - 2; Bacteria - 29; Metazoa - 830;
Fungi - 160; Plants - 230; Viruses - 0; Other Eukaryotes -
544 (source: NCBI BLink).		 0.56 0.32 -0.3
72 AT2G42390 protein kinase C substrate, heavy chain-related 0.55 0.31 -0.32
73 AT1G15320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower; EXPRESSED
DURING: petal differentiation and expansion stage; Has 62
Blast hits to 62 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.55 0.32 -0.31
74 AT1G19390 Wall-associated kinase family protein 0.55 0.32 -0.31
75 AT5G60470 C2H2 and C2HC zinc fingers superfamily protein 0.54 0.3 -0.34
76 AT5G49500 Signal recognition particle, SRP54 subunit protein 0.54 0.3 -0.32
77 AT5G11910 alpha/beta-Hydrolases superfamily protein 0.54 0.3 -0.31
78 AT2G37910 cation/hydrogen exchanger, putative (CHX21) 0.54 0.31 -0.32
79 AT3G46380 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.54 0.32 -0.32
80 AT5G58820 Subtilisin-like serine endopeptidase family protein 0.53 0.31 -0.32
81 AT3G11740 Protein of unknown function (DUF567) 0.53 0.32 -0.31
82 AT4G37970 cinnamyl alcohol dehydrogenase 6 ATCAD6, cinnamyl alcohol
dehydrogenase 6		 0.53 0.32 -0.3
83 AT5G58830 Subtilisin-like serine endopeptidase family protein 0.53 0.33 -0.32
84 AT2G35110 transcription activators GNARLED, NCK-ASSOCIATED PROTEIN 1,
NAPP		 0.53 0.32 -0.31
85 AT3G06895 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.52 0.3 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
86 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		0.71 0.32 -0.33 C0022
87 C0031 3-Methylthio-n-propylglucosinolate - 3-Methylthiopropylglucosinolate glucosinolate biosynthesis from homomethionine -0.7 0.45 -0.42 C0031
88 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.67 0.43 -0.44 C0032
89 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.63 0.47 -0.44 C0053
90 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		0.62 0.31 -0.32 C0137
91 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II 0.59 0.32 -0.32 C0097