AT2G35950 : embryo sac development arrest 12
Query Information
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AGICode AT2G35950
Description embryo sac development arrest 12
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 1 0.3 -0.33
2 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 0.72 0.33 -0.34
3 AT4G16520 Ubiquitin-like superfamily protein autophagy 8f 0.71 0.3 -0.31
4 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 -0.71 0.32 -0.33
5 AT5G52470 fibrillarin 1 ATFBR1, ATFIB1, FIBRILLARIN 1,
fibrillarin 1,
SKP1/ASK1-INTERACTING PROTEIN		 -0.71 0.31 -0.3
6 AT2G37310 Pentatricopeptide repeat (PPR) superfamily protein -0.7 0.33 -0.31
7 AT2G25670 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928
proteins in 1799 species: Archae - 86; Bacteria - 6347;
Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses -
259; Other Eukaryotes - 13792 (source: NCBI BLink).		 -0.7 0.32 -0.33
8 AT1G54230 Winged helix-turn-helix transcription repressor DNA-binding 0.7 0.32 -0.3
9 AT2G40420 Transmembrane amino acid transporter family protein 0.69 0.32 -0.33
10 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 -0.69 0.31 -0.32
11 AT5G61770 PETER PAN-like protein PETER PAN-like protein -0.69 0.32 -0.31
12 AT1G50920 Nucleolar GTP-binding protein -0.69 0.32 -0.3
13 AT3G08840 D-alanine--D-alanine ligase family 0.68 0.32 -0.32
14 AT4G29070 Phospholipase A2 family protein 0.68 0.31 -0.34
15 AT5G41010 DNA directed RNA polymerase, 7 kDa subunit NRPB12, NRPD12, NRPE12 -0.68 0.3 -0.31
16 AT1G04350 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.68 0.31 -0.34
17 AT5G63200 tetratricopeptide repeat (TPR)-containing protein 0.68 0.3 -0.3
18 AT1G08610 Pentatricopeptide repeat (PPR) superfamily protein -0.68 0.31 -0.31
19 AT1G11940 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.68 0.27 -0.32
20 AT3G42710 transposable element gene -0.68 0.32 -0.31
21 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.68 0.3 -0.32
22 AT3G10420 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SEEDLING PLASTID DEVELOPMENT 1 0.67 0.31 -0.35
23 AT4G15770 RNA binding -0.67 0.3 -0.34
24 AT5G11430 SPOC domain / Transcription elongation factor S-II protein -0.67 0.33 -0.3
25 AT1G54770 Fcf2 pre-rRNA processing protein -0.66 0.31 -0.32
26 AT1G60850 DNA-directed RNA polymerase family protein AAC42, ATRPAC42 -0.66 0.32 -0.33
27 AT1G69620 ribosomal protein L34 ribosomal protein L34 -0.66 0.31 -0.32
28 AT3G13860 heat shock protein 60-3A heat shock protein 60-3A -0.66 0.35 -0.3
29 AT3G23990 heat shock protein 60 heat shock protein 60, HEAT SHOCK
PROTEIN 60-3B		 -0.66 0.34 -0.29
30 AT5G61970 signal recognition particle-related / SRP-related -0.66 0.32 -0.35
31 AT5G11910 alpha/beta-Hydrolases superfamily protein 0.66 0.3 -0.34
32 AT5G45620 Proteasome component (PCI) domain protein -0.66 0.31 -0.32
33 AT3G55605 Mitochondrial glycoprotein family protein -0.66 0.31 -0.31
34 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.66 0.31 -0.32
35 AT1G61640 Protein kinase superfamily protein -0.66 0.32 -0.31
36 AT4G23540 ARM repeat superfamily protein -0.66 0.32 -0.33
37 AT5G06110 DnaJ domain ;Myb-like DNA-binding domain -0.66 0.31 -0.3
38 AT3G16840 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.66 0.33 -0.32
39 AT2G34840 Coatomer epsilon subunit 0.65 0.3 -0.33
40 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 -0.65 0.31 -0.33
41 AT1G73240 CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup
(InterPro:IPR019049); Has 36 Blast hits to 36 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.32 -0.33
42 AT3G29380 Cyclin-like family protein plant-specific TFIIB-related
protein 2		 0.65 0.33 -0.31
43 AT1G29090 Cysteine proteinases superfamily protein -0.65 0.32 -0.32
44 AT2G18520 Tetratricopeptide repeat (TPR)-like superfamily protein -0.65 0.31 -0.29
45 AT4G28450 nucleotide binding;protein binding -0.65 0.3 -0.32
46 AT1G62040 Ubiquitin-like superfamily protein autophagy 8c 0.65 0.33 -0.32
47 AT4G29510 arginine methyltransferase 11 ARABIDOPSIS THALIANA ARGININE
METHYLTRANSFERASE 11, ARABIDOPSIS
THALIANA PROTEIN ARGININE
METHYLTRANSFERASE 1B, arginine
methyltransferase 11, PROTEIN
ARGININE METHYLTRANSFERASE 1B		 -0.65 0.3 -0.31
48 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 -0.65 0.3 -0.32
49 AT3G56090 ferritin 3 ferritin 3, ferritin 3 -0.65 0.34 -0.31
50 AT5G39910 Pectin lyase-like superfamily protein 0.64 0.31 -0.32
51 AT3G56270 Plant protein of unknown function (DUF827) 0.64 0.31 -0.32
52 AT4G34910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.64 0.32 -0.33
53 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.31 -0.34
54 AT3G02490 Pentatricopeptide repeat (PPR) superfamily protein -0.64 0.33 -0.3
55 AT2G21440 RNA-binding (RRM/RBD/RNP motifs) family protein -0.64 0.33 -0.31
56 AT3G12270 protein arginine methyltransferase 3 ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 3,
protein arginine methyltransferase
3		 -0.64 0.34 -0.32
57 AT3G20420 RNAse THREE-like protein 2 RNASEIII-LIKE 2, RNAse THREE-like
protein 2		 0.64 0.33 -0.32
58 AT4G07540 transposable element gene 0.64 0.32 -0.3
59 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 -0.64 0.32 -0.31
60 AT3G46210 Ribosomal protein S5 domain 2-like superfamily protein -0.64 0.33 -0.31
61 AT2G40700 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.63 0.28 -0.31
62 AT4G31180 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 -0.63 0.33 -0.33
63 AT5G02500 heat shock cognate protein 70-1 ARABIDOPSIS THALIANA HEAT SHOCK
COGNATE PROTEIN 70-1, AtHsp70-1,
HEAT SHOCK COGNATE PROTEIN 70,
heat shock cognate protein 70-1,
HEAT SHOCK PROTEIN 70-1		 -0.63 0.31 -0.3
64 AT1G51590 alpha-mannosidase 1 ALPHA-MANNOSIDASE IB,
alpha-mannosidase 1		 -0.63 0.31 -0.3
65 AT2G22310 ubiquitin-specific protease 4 ubiquitin-specific protease 4,
ubiquitin-specific protease 4		 0.63 0.3 -0.31
66 AT3G52140 tetratricopeptide repeat (TPR)-containing protein -0.63 0.31 -0.32
67 AT5G19350 RNA-binding (RRM/RBD/RNP motifs) family protein -0.63 0.32 -0.32
68 AT1G26460 Tetratricopeptide repeat (TPR)-like superfamily protein -0.63 0.3 -0.31
69 AT3G62360 Carbohydrate-binding-like fold -0.62 0.33 -0.33
70 AT1G63780 Ribosomal RNA processing Brix domain protein IMP4 -0.62 0.32 -0.3
71 AT1G05180 NAD(P)-binding Rossmann-fold superfamily protein AUXIN RESISTANT 1 -0.62 0.33 -0.32
72 AT1G67500 recovery protein 3 recovery protein 3, recovery
protein 3		 0.62 0.31 -0.33
73 AT3G04710 ankyrin repeat family protein tetratricopeptide repeat 10 -0.62 0.31 -0.32
74 AT1G04080 Tetratricopeptide repeat (TPR)-like superfamily protein PRP39 -0.62 0.3 -0.31
75 AT1G04510 MOS4-associated complex 3A MOS4-associated complex 3A -0.62 0.32 -0.3
76 AT2G16500 arginine decarboxylase 1 arginine decarboxylase 1, ARGDC,
ARGDC1, SPE1		 -0.62 0.31 -0.32
77 AT3G15000 cobalt ion binding -0.62 0.31 -0.32
78 AT5G52880 F-box family protein 0.62 0.32 -0.3
79 AT5G06210 RNA binding (RRM/RBD/RNP motifs) family protein -0.62 0.31 -0.32
80 AT2G15042 Leucine-rich repeat (LRR) family protein 0.61 0.3 -0.32
81 AT4G12750 Homeodomain-like transcriptional regulator -0.61 0.33 -0.33
82 AT3G62310 RNA helicase family protein -0.61 0.3 -0.3
83 AT2G17360 Ribosomal protein S4 (RPS4A) family protein -0.61 0.32 -0.32
84 AT5G51120 polyadenylate-binding protein 1 POLYADENYLATE-BINDING PROTEIN 1,
polyadenylate-binding protein 1		 -0.61 0.33 -0.31
85 AT4G09510 cytosolic invertase 2 alkaline/neutral invertase I,
cytosolic invertase 2		 -0.61 0.33 -0.32
86 AT2G27610 Tetratricopeptide repeat (TPR)-like superfamily protein -0.61 0.32 -0.3
87 AT4G38710 glycine-rich protein -0.61 0.31 -0.3
88 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).		 -0.61 0.32 -0.3
89 AT5G49530 SIN-like family protein -0.61 0.32 -0.32
90 AT5G07250 RHOMBOID-like protein 3 RHOMBOID-like protein 3,
RHOMBOID-like protein 3		 0.61 0.31 -0.32
91 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein 0.61 0.34 -0.31
92 AT2G20770 GCR2-like 2 GCR2-like 2 0.61 0.31 -0.32
93 AT2G44510 CDK inhibitor P21 binding protein -0.61 0.3 -0.32
94 AT2G20670 Protein of unknown function (DUF506) 0.6 0.29 -0.3
95 AT2G06005 FRIGIDA interacting protein 1 FRIGIDA interacting protein 1 0.6 0.31 -0.31
96 AT5G57670 Protein kinase superfamily protein 0.6 0.34 -0.31
97 AT1G55460 DNA/RNA-binding protein Kin17, conserved region 0.59 0.3 -0.31
98 AT5G18000 VERDANDI VERDANDI 0.59 0.3 -0.3
99 AT2G22740 SU(VAR)3-9 homolog 6 SET DOMAIN PROTEIN 23, SU(VAR)3-9
homolog 6		 0.59 0.32 -0.32
100 AT1G12680 phosphoenolpyruvate carboxylase-related kinase 2 phosphoenolpyruvate
carboxylase-related kinase 2		 0.59 0.32 -0.31
101 AT1G56710 Pectin lyase-like superfamily protein 0.58 0.32 -0.31
102 AT1G30200 F-box family protein 0.58 0.33 -0.33
103 AT1G21870 golgi nucleotide sugar transporter 5 golgi nucleotide sugar transporter
5		 0.57 0.32 -0.3
104 AT3G43170 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF295 (InterPro:IPR005174); BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF295) (TAIR:AT5G54330.1); Has 90 Blast hits to
90 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink).		 0.57 0.31 -0.3
105 AT5G19430 RING/U-box superfamily protein 0.56 0.32 -0.32
106 AT2G36040 transposable element gene 0.56 0.32 -0.31
107 AT2G19330 plant intracellular ras group-related LRR 6 plant intracellular ras
group-related LRR 6		 0.56 0.32 -0.34
108 AT3G07930 DNA glycosylase superfamily protein 0.56 0.31 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
109 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.63 0.43 -0.46 C0053
110 C0114 Homocystine L-Homocystine - - 0.61 0.32 -0.31
111 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		0.59 0.32 -0.32 C0137
112 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II 0.59 0.32 -0.32 C0097
113 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		0.57 0.34 -0.32 C0005