AT1G10000 : -
Query Information
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AGICode AT1G10000
Description Ribonuclease H-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G10000 Ribonuclease H-like superfamily protein 1 0.3 -0.34
2 ATCG00280 photosystem II reaction center protein C photosystem II reaction center
protein C		 0.66 0.34 -0.29
3 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 0.66 0.29 -0.32
4 ATCG00080 photosystem II reaction center protein I photosystem II reaction center
protein I		 0.66 0.3 -0.3
5 AT1G21850 SKU5 similar 8 SKU5 similar 8 0.65 0.29 -0.3
6 AT1G53210 sodium/calcium exchanger family protein / calcium-binding
EF hand family protein		 0.65 0.34 -0.32
7 AT2G29970 Double Clp-N motif-containing P-loop nucleoside
triphosphate hydrolases superfamily protein		 0.64 0.33 -0.33
8 AT5G57670 Protein kinase superfamily protein 0.62 0.31 -0.32
9 AT2G04660 anaphase-promoting complex/cyclosome 2 anaphase-promoting
complex/cyclosome 2		 0.62 0.31 -0.3
10 AT4G30090 embryo defective 1353 -0.62 0.32 -0.31
11 AT1G22600 Late embryogenesis abundant protein (LEA) family protein 0.61 0.3 -0.3
12 AT5G07960 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0139
(InterPro:IPR005351); Has 193 Blast hits to 193 proteins in
75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi
- 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 -0.6 0.33 -0.31
13 AT1G67450 F-box and associated interaction domains-containing protein 0.6 0.31 -0.31
14 AT3G18300 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G48780.1); Has 69 Blast hits
to 69 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.59 0.32 -0.31
15 AT2G32000 DNA topoisomerase, type IA, core 0.59 0.29 -0.35
16 AT3G04150 RmlC-like cupins superfamily protein 0.59 0.32 -0.31
17 AT5G49440 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.59 0.32 -0.31
18 AT5G62040 PEBP (phosphatidylethanolamine-binding protein) family
protein		 brother of FT and TFL1 0.58 0.31 -0.32
19 AT1G12830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 39778
Blast hits to 22088 proteins in 1060 species: Archae - 152;
Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants -
2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI
BLink).		 -0.58 0.33 -0.31
20 AT4G15040 Subtilisin-like serine endopeptidase family protein 0.57 0.31 -0.3
21 AT3G42880 Leucine-rich repeat protein kinase family protein 0.57 0.32 -0.31
22 ATCG00070 photosystem II reaction center protein K precursor photosystem II reaction center
protein K precursor		 0.57 0.31 -0.29
23 AT1G12520 copper chaperone for SOD1 copper chaperone for SOD1, copper
chaperone for SOD1		 -0.57 0.31 -0.33
24 AT4G14760 kinase interacting (KIP1-like) family protein 0.57 0.32 -0.3
25 AT5G60630 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 6 growth stages; BEST Arabidopsis thaliana protein
match is: hydroxyproline-rich glycoprotein family protein
(TAIR:AT3G45230.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.56 0.31 -0.33
26 AT1G49400 Nucleic acid-binding, OB-fold-like protein embryo defective 1129 -0.56 0.33 -0.31
27 AT2G17870 cold shock domain protein 3 ARABIDOPSIS COLD SHOCK DOMAIN
PROTEIN 3, cold shock domain
protein 3		 -0.56 0.32 -0.32
28 AT3G01020 ISCU-like 2 ISCU-LIKE 2, ISCU-like 2 0.56 0.33 -0.31
29 AT2G36120 Glycine-rich protein family DEFECTIVELY ORGANIZED TRIBUTARIES
1		 -0.55 0.31 -0.32
30 AT1G70000 myb-like transcription factor family protein -0.55 0.31 -0.31
31 AT4G39200 Ribosomal protein S25 family protein -0.55 0.34 -0.3
32 AT1G61920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: sperm cell, male
gametophyte, pollen tube; EXPRESSED DURING: M germinated
pollen stage; Has 3 Blast hits to 3 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.55 0.32 -0.32
33 AT5G58590 RAN binding protein 1 RAN binding protein 1 -0.54 0.34 -0.32
34 AT1G67540 unknown protein; Has 18 Blast hits to 18 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.54 0.33 -0.32
35 AT1G66660 Protein with RING/U-box and TRAF-like domains -0.54 0.32 -0.31
36 AT4G11020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G23870.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.54 0.32 -0.34
37 AT3G43940 unknown protein; Has 24 Blast hits to 24 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.53 0.31 -0.29
38 AT1G08370 decapping 1 ATDCP1, decapping 1 -0.53 0.33 -0.3
39 AT5G46850 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.53 0.33 -0.3
40 AT4G25530 FLOWERING WAGENINGEN FLOWERING WAGENINGEN, HOMEODOMAIN
GLABROUS 6		 0.53 0.33 -0.32
41 AT4G35870 early-responsive to dehydration stress protein (ERD4) 0.52 0.29 -0.31
42 AT1G75870 unknown protein; Has 10 Blast hits to 10 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.52 0.32 -0.31
43 AT2G07200 Cysteine proteinases superfamily protein 0.52 0.34 -0.31
44 AT4G36590 MADS-box transcription factor family protein 0.52 0.34 -0.32
45 AT1G17800 early nodulin-like protein 22 AtENODL22, early nodulin-like
protein 22		 0.51 0.31 -0.32
46 AT3G31380 transposable element gene 0.51 0.32 -0.33
47 AT3G26120 terminal EAR1-like 1 terminal EAR1-like 1 0.51 0.31 -0.32
48 AT3G13660 Disease resistance-responsive (dirigent-like protein)
family protein		 0.51 0.3 -0.33
49 AT1G66530 Arginyl-tRNA synthetase, class Ic -0.51 0.3 -0.32
50 AT3G49630 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.51 0.31 -0.32
51 AT3G25160 ER lumen protein retaining receptor family protein 0.51 0.33 -0.32
52 AT1G43650 nodulin MtN21 /EamA-like transporter family protein 0.51 0.34 -0.3
53 AT1G55560 SKU5 similar 14 SKU5 similar 14 0.51 0.32 -0.32
54 AT3G08000 RNA-binding (RRM/RBD/RNP motifs) family protein -0.51 0.32 -0.3
55 AT5G59370 actin 4 actin 4 0.51 0.32 -0.32
56 AT2G46620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.51 0.31 -0.29
57 AT5G25750 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.5 0.32 -0.32
58 AT5G51630 Disease resistance protein (TIR-NBS-LRR class) family -0.5 0.32 -0.34
59 AT3G19740 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.5 0.33 -0.31
60 AT2G26460 RED family protein SUPPRESSORS OF MEC-8 AND UNC-52 2 -0.49 0.33 -0.3
61 AT1G34500 MBOAT (membrane bound O-acyl transferase) family protein -0.48 0.31 -0.29
62 AT4G11870 unknown protein; Has 98 Blast hits to 93 proteins in 36
species: Archae - 2; Bacteria - 26; Metazoa - 15; Fungi -
20; Plants - 2; Viruses - 0; Other Eukaryotes - 33 (source:
NCBI BLink).		 -0.48 0.33 -0.33
63 AT4G39000 glycosyl hydrolase 9B17 glycosyl hydrolase 9B17, glycosyl
hydrolase 9B17		 -0.48 0.31 -0.32
64 AT5G42250 Zinc-binding alcohol dehydrogenase family protein -0.47 0.34 -0.32
65 AT3G20180 Copper transport protein family -0.47 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
66 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.75 0.46 -0.43 C0056
67 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.73 0.45 -0.44 C0261
68 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.71 0.44 -0.45 C0088
69 C0142 Malonic acid - Malonate fatty acid biosynthesis (plant mitochondria) 0.67 0.32 -0.3 C0142
70 C0026 2-Hydroxyisobutyric acid - - β oxidation 0.67 0.48 -0.48
71 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.67 0.44 -0.44 C0087
72 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		0.66 0.46 -0.45 C0015
73 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway 0.66 0.3 -0.31 C0218
74 C0006 β-Homothreonine L-β-Homothreonine - - 0.66 0.44 -0.42
75 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.65 0.45 -0.44 C0262
76 C0061 Aspartic acid L-Aspartic acid L-Aspartate purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging,
indole-3-acetyl-amino acid biosynthesis,
citrulline-nitric oxide cycle,
asparagine degradation I,
cyanide detoxification II,
asparagine biosynthesis I,
asparagine biosynthesis III (tRNA-dependent),
arginine biosynthesis I,
inosine-5'-phosphate biosynthesis II,
uridine-5'-phosphate biosynthesis,
aspartate biosynthesis,
homoserine biosynthesis,
lysine biosynthesis VI,
aspartate degradation II,
urea cycle,
purine nucleotides de novo biosynthesis II,
NAD biosynthesis I (from aspartate),
IAA degradation IV,
arginine biosynthesis II (acetyl cycle) 		0.65 0.31 -0.29 C0061
77 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.64 0.43 -0.43 C0075
78 C0062 Betain - - - 0.6 0.29 -0.32
79 C0259 Tyramine - Tyramine hydroxycinnamic acid tyramine amides biosynthesis,
suberin biosynthesis 		0.59 0.31 -0.31 C0259
80 C0216 Proline L-Proline L-Proline proline degradation II,
arginine degradation VI (arginase 2 pathway),
L-Ndelta-acetylornithine biosynthesis,
tRNA charging,
citrulline biosynthesis,
proline biosynthesis III 		0.56 0.32 -0.33 C0216
81 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		0.53 0.33 -0.33 C0022