4.0:Information of module
sfr3 cold
In comparison with Root dark control 24h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0072593 reactive oxygen species metabolic proces... BP 1.365e-03
GO:0042743 hydrogen peroxide metabolic process BP 6.063e-03
GO:0050665 hydrogen peroxide biosynthetic process BP 7.274e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048364 root development BP 2.916e-03
GO:0022622 root system development BP 3.000e-03
GO:0043455 regulation of secondary metabolic proces... BP 4.025e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
sfr3 cold		 Log2 signal ratio
Root dark control 24h
1 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 0.236 0.249
2 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.151 0.047
3 246396_at AT1G58180 ATBCA6, A. THALIANA BETA CARBONIC ANHYDRASE 6, BCA6, beta carbonic anhydrase 6 0.122 0.481
4 254195_at AT4G24020 NLP7, NIN like protein 7 0.115 0.166
5 252320_at AT3G48580 XTH11, xyloglucan endotransglucosylase/hydrolase 11 0.105 0.640
6 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.087 0.376
7 251427_at AT3G60130 BGLU16, beta glucosidase 16 0.086 0.198
8 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 0.077 0.068
9 264767_at AT1G61380 SD1-29, S-domain-1 29 0.075 0.160
10 260819_at AT1G06850 AtbZIP52, basic leucine-zipper 52, bZIP52, basic leucine-zipper 52 0.072 -0.288
11 246426_at AT5G17430 BBM, BABY BOOM 0.069 0.282
12 262491_at AT1G21650 SECA2 0.066 -0.086
13 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.062 -0.184
14 250755_at AT5G05750 [DNAJ heat shock N-terminal domain-containing protein] 0.056 0.298
15 249045_at AT5G44380 [FAD-binding Berberine family protein] 0.056 0.152
16 266726_at AT2G03160 ASK19, SKP1-like 19, SK19, SKP1-like 19 0.055 0.103
17 254108_at AT4G25230 RIN2, RPM1 interacting protein 2 0.055 0.011
18 246327_at AT1G16670 [Protein kinase superfamily protein] 0.053 0.170
19 261639_at AT1G50010 TUA2, tubulin alpha-2 chain -0.348 -0.209
20 256400_at AT3G06140 LUL4, LOG2-LIKE UBIQUITIN LIGASE4 -0.111 -0.339
21 245141_at AT2G45400 BEN1, BRI1-5 ENHANCED 1 -0.106 -0.302
22 264176_at AT1G02110 unknown -0.103 0.126
23 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 -0.098 -0.497
24 250637_at AT5G07530 ATGRP-7, ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 7, ATGRP17, ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 17, GRP17, glycine rich protein 17 -0.095 0.199
25 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a -0.089 -0.257
26 265144_at AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN -0.085 0.026
27 252799_at AT3G42320 unknown -0.084 0.174
28 266845_at AT2G26110 unknown -0.082 -0.043
29 245965_at AT5G19730 [Pectin lyase-like superfamily protein] -0.082 -0.618
30 264769_at AT1G61350 [ARM repeat superfamily protein] -0.079 0.030
31 267416_at AT2G34980 SETH1 -0.077 0.019
32 265544_at AT2G28260 ATCNGC15, cyclic nucleotide-gated channel 15, CNGC15, cyclic nucleotide-gated channel 15 -0.074 -0.094
33 257923_at AT3G23160 unknown -0.068 0.110
34 249632_at AT5G37170 [O-methyltransferase family protein] -0.067 0.113
35 265719_at AT2G03500 [Homeodomain-like superfamily protein] -0.067 0.137