AT5G59450 : -
Query Information
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AGICode AT5G59450
Description GRAS family transcription factor
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G59450 GRAS family transcription factor 1 0.32 -0.3
2 AT1G49840 Protein of unknown function (DUF620) 0.74 0.31 -0.34
3 AT5G46710 PLATZ transcription factor family protein 0.69 0.32 -0.31
4 AT5G50400 purple acid phosphatase 27 ARABIDOPSIS THALIANA PURPLE ACID
PHOSPHATASE 27, purple acid
phosphatase 27		 -0.68 0.31 -0.31
5 AT1G74840 Homeodomain-like superfamily protein 0.66 0.33 -0.33
6 AT4G10925 Nuclear transport factor 2 (NTF2) family protein 0.66 0.3 -0.32
7 AT1G75800 Pathogenesis-related thaumatin superfamily protein 0.65 0.33 -0.3
8 AT3G22490 Seed maturation protein -0.64 0.31 -0.31
9 AT2G25450 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.32 -0.35
10 AT2G34840 Coatomer epsilon subunit -0.63 0.29 -0.3
11 AT2G33070 nitrile specifier protein 2 NITRILE-SPECIFIER PROTEIN 2,
nitrile specifier protein 2		 -0.63 0.32 -0.31
12 AT2G26190 calmodulin-binding family protein 0.62 0.34 -0.32
13 AT5G13100 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.62 0.29 -0.31
14 AT3G06433 pseudogene of nodulin MtN3 family protein -0.62 0.31 -0.32
15 AT3G25600 Calcium-binding EF-hand family protein 0.62 0.35 -0.31
16 AT3G13360 WPP domain interacting protein 3 WPP domain interacting protein 3 0.62 0.31 -0.32
17 AT1G76700 DNAJ heat shock N-terminal domain-containing protein 0.61 0.3 -0.32
18 AT1G44800 nodulin MtN21 /EamA-like transporter family protein -0.6 0.32 -0.31
19 AT4G08290 nodulin MtN21 /EamA-like transporter family protein -0.6 0.31 -0.32
20 AT1G62510 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.6 0.31 -0.34
21 AT2G12720 transposable element gene -0.6 0.32 -0.31
22 AT1G55240 Family of unknown function (DUF716) -0.59 0.33 -0.3
23 AT3G47420 phosphate starvation-induced gene 3 Glycerol-3-phosphate permease 1,
phosphate starvation-induced gene
3, Glycerol-3-phosphate permease
1, phosphate starvation-induced
gene 3		 -0.59 0.29 -0.32
24 AT4G38940 Galactose oxidase/kelch repeat superfamily protein 0.59 0.33 -0.32
25 AT5G47810 phosphofructokinase 2 phosphofructokinase 2 -0.59 0.33 -0.32
26 AT4G16845 VEFS-Box of polycomb protein REDUCED VERNALIZATION RESPONSE 2 -0.59 0.31 -0.32
27 AT5G19240 Glycoprotein membrane precursor GPI-anchored 0.59 0.29 -0.32
28 AT1G22900 Disease resistance-responsive (dirigent-like protein)
family protein		 0.58 0.32 -0.31
29 AT1G07520 GRAS family transcription factor 0.58 0.29 -0.32
30 AT1G63530 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT1G63540.1); Has 10212 Blast hits to 4024 proteins
in 434 species: Archae - 1; Bacteria - 1259; Metazoa -
3608; Fungi - 2247; Plants - 291; Viruses - 90; Other
Eukaryotes - 2716 (source: NCBI BLink).		 -0.58 0.3 -0.3
31 AT1G60710 NAD(P)-linked oxidoreductase superfamily protein ATB2 -0.58 0.29 -0.31
32 AT5G02910 F-box/RNI-like superfamily protein 0.58 0.33 -0.34
33 AT4G23810 WRKY family transcription factor ATWRKY53, WRKY53 0.58 0.3 -0.3
34 AT5G45750 RAB GTPase homolog A1C RAB GTPase homolog A1C, RAB GTPase
homolog A1C		 0.58 0.32 -0.32
35 AT5G08750 RING/FYVE/PHD zinc finger superfamily protein -0.58 0.3 -0.31
36 AT4G29680 Alkaline-phosphatase-like family protein -0.58 0.32 -0.32
37 AT2G01500 Homeodomain-like superfamily protein HIGH EXPRESSION OF OSMOTICALLY
RESPONSIVE GENE 9, PRETTY FEW
SEEDS 2, WUSCHEL RELATED HOMEOBOX
6		 -0.58 0.32 -0.29
38 AT2G13100 Major facilitator superfamily protein glycerol-3-phosphate permease 5,
glycerol-3-phosphate permease 5		 -0.58 0.31 -0.31
39 AT5G55810 nicotinate/nicotinamide mononucleotide adenyltransferase nicotinate/nicotinamide
mononucleotide adenyltransferase,
nicotinate/nicotinamide
mononucleotide adenyltransferase		 -0.58 0.32 -0.32
40 AT2G22950 Cation transporter/ E1-E2 ATPase family protein auto-regulated Ca2+-ATPase 7 0.58 0.31 -0.31
41 AT3G07650 CONSTANS-like 9 CONSTANS-like 9 0.57 0.32 -0.28
42 AT2G38280 AMP deaminase, putative / myoadenylate deaminase, putative ADENOSINE 5'-MONOPHOSPHATE
DEAMINASE, EMBRYONIC FACTOR1		 -0.57 0.3 -0.32
43 AT5G07070 CBL-interacting protein kinase 2 CBL-interacting protein kinase 2,
SNF1-RELATED PROTEIN KINASE 3.2		 0.57 0.32 -0.3
44 AT1G76290 AMP-dependent synthetase and ligase family protein -0.57 0.3 -0.3
45 AT5G64570 beta-D-xylosidase 4 ARABIDOPSIS THALIANA
BETA-D-XYLOSIDASE 4,
beta-D-xylosidase 4		 -0.57 0.32 -0.31
46 AT5G23130 Peptidoglycan-binding LysM domain-containing protein 0.57 0.32 -0.33
47 AT3G04910 with no lysine (K) kinase 1 ATWNK1, with no lysine (K) kinase
1, ZIK4		 0.57 0.31 -0.32
48 AT3G55450 PBS1-like 1 PBS1-like 1 0.56 0.3 -0.34
49 AT5G39100 germin-like protein 6 germin-like protein 6 0.56 0.31 -0.32
50 AT1G03470 Kinase interacting (KIP1-like) family protein 0.56 0.33 -0.33
51 AT5G57840 HXXXD-type acyl-transferase family protein -0.56 0.29 -0.32
52 AT3G62970 zinc finger (C3HC4-type RING finger) family protein -0.56 0.32 -0.31
53 AT3G17790 purple acid phosphatase 17 ATACP5, ATPAP17, purple acid
phosphatase 17		 -0.56 0.33 -0.31
54 AT3G03290 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.55 0.3 -0.33
55 AT1G12470 zinc ion binding -0.54 0.33 -0.3
56 AT4G28710 Myosin family protein with Dil domain MYOSIN XI H, XIH -0.54 0.32 -0.31
57 AT1G42190 GAG/POL/ENV polyprotein 0.54 0.33 -0.29
58 AT3G15280 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant
structures; EXPRESSED DURING: L mature pollen stage, 4
anthesis, petal differentiation and expansion stage; Has 36
Blast hits to 36 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.54 0.32 -0.33
59 AT5G24070 Peroxidase superfamily protein 0.54 0.31 -0.33
60 AT2G05540 Glycine-rich protein family -0.54 0.34 -0.29
61 AT2G23740 nucleic acid binding;sequence-specific DNA binding
transcription factors;zinc ion binding		 -0.54 0.3 -0.32
62 AT3G19540 Protein of unknown function (DUF620) 0.54 0.32 -0.32
63 AT1G69040 ACT domain repeat 4 ACT domain repeat 4 0.54 0.33 -0.36
64 AT1G39350 transposable element gene -0.54 0.32 -0.31
65 AT5G56110 myb domain protein 103 myb domain protein 103,
ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 80, MALE STERILE 188, myb
domain protein 103, MYB80		 -0.54 0.33 -0.34
66 AT5G40500 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.53 0.31 -0.3
67 AT3G13772 transmembrane nine 7 AtTMN7, transmembrane nine 7 -0.53 0.33 -0.34
68 AT4G02890 Ubiquitin family protein UBQ14 -0.53 0.31 -0.33
69 AT5G20710 beta-galactosidase 7 beta-galactosidase 7 -0.53 0.33 -0.31
70 AT4G03820 Protein of unknown function (DUF3537) -0.52 0.31 -0.33
71 AT2G40580 Protein kinase superfamily protein 0.52 0.31 -0.31
72 AT4G07660 transposable element gene 0.52 0.31 -0.32
73 AT3G23460 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.52 0.31 -0.31
74 AT2G23240 Plant EC metallothionein-like protein, family 15 Arabidopsis thaliana
metallothionein 4b		 -0.52 0.31 -0.33
75 AT1G60995 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s:
Membralin (InterPro:IPR019144); Has 172 Blast hits to 170
proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa -
110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes
- 24 (source: NCBI BLink).		 0.52 0.34 -0.33
76 AT3G10120 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03890.1); Has 57 Blast hits
to 57 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.52 0.31 -0.32
77 AT1G19200 Protein of unknown function (DUF581) -0.51 0.31 -0.31
78 AT2G32810 beta galactosidase 9 beta galactosidase 9,
beta-galactosidase 9		 -0.51 0.31 -0.34
79 AT4G32960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits
to 106 proteins in 39 species: Archae - 0; Bacteria - 0;
Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 -0.51 0.31 -0.33
80 AT5G37450 Leucine-rich repeat protein kinase family protein 0.51 0.3 -0.33
81 AT5G19850 alpha/beta-Hydrolases superfamily protein -0.51 0.33 -0.33
82 AT1G09360 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.5 0.31 -0.33
83 AT4G25100 Fe superoxide dismutase 1 ARABIDOPSIS FE SUPEROXIDE
DISMUTASE 1, Fe superoxide
dismutase 1		 -0.5 0.3 -0.33
84 AT1G33500 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.5 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
85 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		-0.7 0.48 -0.44 C0056
86 C0197 Phosphatidylcholine-36:1 - Phosphatidylcholine-36:1 choline biosynthesis III,
diacylglycerol biosynthesis,
phospholipases,
triacylglycerol biosynthesis,
linoleate biosynthesis I,
phosphatidylcholine biosynthesis III,
glutathione redox reactions I 		0.69 0.48 -0.49 C0197
87 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) -0.65 0.45 -0.45 C0099
88 C0083 Digalactosyldiacylglycerol-36:4 - Digalactosyldiacylglycerol-36:4 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.65 0.49 -0.45 C0083
89 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.64 0.46 -0.44 C0053
90 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		-0.6 0.44 -0.44 C0186