AT5G46400 : AT PRP39-2
Query Information
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AGICode AT5G46400
Description Tetratricopeptide repeat (TPR)-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G46400 Tetratricopeptide repeat (TPR)-like superfamily protein AT PRP39-2, PRP39-2 1 0.31 -0.33
2 AT5G07890 myosin heavy chain-related 0.77 0.32 -0.31
3 AT1G77570 Winged helix-turn-helix transcription repressor DNA-binding -0.73 0.29 -0.33
4 AT5G35170 adenylate kinase family protein 0.71 0.31 -0.31
5 AT2G36040 transposable element gene 0.71 0.33 -0.32
6 AT2G36320 A20/AN1-like zinc finger family protein -0.69 0.32 -0.32
7 AT3G02630 Plant stearoyl-acyl-carrier-protein desaturase family
protein		 -0.67 0.33 -0.32
8 AT1G20270 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.67 0.32 -0.32
9 AT5G62740 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 ATHIR1, AtHIR4,
HYPERSENSITIVE-INDUCED RESPONSE
PROTEIN 1, hypersensitive induced
reaction 4		 -0.67 0.3 -0.32
10 AT1G78950 Terpenoid cyclases family protein 0.67 0.31 -0.3
11 AT2G20330 Transducin/WD40 repeat-like superfamily protein -0.66 0.33 -0.3
12 AT4G26210 Mitochondrial ATP synthase subunit G protein -0.66 0.33 -0.32
13 AT1G52730 Transducin/WD40 repeat-like superfamily protein -0.66 0.31 -0.32
14 AT5G58640 Selenoprotein, Rdx type -0.66 0.3 -0.33
15 AT1G74160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits
to 2217 proteins in 314 species: Archae - 0; Bacteria -
264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses -
34; Other Eukaryotes - 1149 (source: NCBI BLink).		 0.66 0.33 -0.31
16 AT5G52460 FBD, F-box and Leucine Rich Repeat domains containing
protein		 embryo sac development arrest 41 0.66 0.34 -0.32
17 AT5G20320 dicer-like 4 DICER-LIKE 4, dicer-like 4 0.65 0.31 -0.3
18 AT5G64120 Peroxidase superfamily protein -0.64 0.31 -0.33
19 AT3G01015 TPX2 (targeting protein for Xklp2) protein family 0.64 0.34 -0.32
20 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 -0.64 0.33 -0.31
21 AT4G01700 Chitinase family protein -0.64 0.34 -0.32
22 AT2G35910 RING/U-box superfamily protein -0.64 0.32 -0.32
23 AT1G18570 myb domain protein 51 myb domain protein 51, BW51A,
BW51B, HIGH INDOLIC GLUCOSINOLATE
1, myb domain protein 51		 -0.64 0.33 -0.32
24 AT3G20020 protein arginine methyltransferase 6 ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 6,
protein arginine methyltransferase
6		 0.64 0.3 -0.31
25 AT5G43860 chlorophyllase 2 ARABIDOPSIS THALIANA
CHLOROPHYLLASE 2, chlorophyllase 2		 -0.64 0.31 -0.3
26 AT1G21730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.64 0.31 -0.3
27 AT2G29920 unknown protein; Has 14 Blast hits to 9 proteins in 5
species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink).		 0.64 0.31 -0.32
28 AT1G10180 BEST Arabidopsis thaliana protein match is: exocyst complex
component 84B (TAIR:AT5G49830.1); Has 132 Blast hits to 132
proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa -
7; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes -
8 (source: NCBI BLink).		 0.64 0.3 -0.31
29 AT1G17890 NAD(P)-binding Rossmann-fold superfamily protein GER2 -0.64 0.33 -0.31
30 AT1G50250 FTSH protease 1 FTSH protease 1 0.64 0.32 -0.31
31 AT4G17430 O-fucosyltransferase family protein -0.63 0.31 -0.33
32 AT1G79390 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.63 0.31 -0.33
33 AT3G48570 secE/sec61-gamma protein transport protein -0.63 0.31 -0.32
34 AT4G04970 glucan synthase-like 1 GLUCAN SYNTHASE LIKE 1, GLUCAN
SYNTHASE LIKE-1, GSL01, glucan
synthase-like 1		 0.63 0.31 -0.31
35 AT3G60310 unknown protein; Has 22 Blast hits to 18 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.63 0.32 -0.3
36 AT5G59340 WUSCHEL related homeobox 2 WUSCHEL related homeobox 2 0.63 0.33 -0.32
37 AT4G18395 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.63 0.3 -0.3
38 AT5G14105 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.63 0.32 -0.31
39 AT1G09330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
integral to membrane; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF846, eukaryotic
(InterPro:IPR008564); Has 518 Blast hits to 518 proteins in
206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi
- 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107
(source: NCBI BLink).		 -0.63 0.31 -0.3
40 AT4G11770 Galactose oxidase/kelch repeat superfamily protein 0.63 0.3 -0.31
41 AT4G05620 Galactose oxidase/kelch repeat superfamily protein 0.63 0.33 -0.31
42 AT4G39220 Rer1 family protein ATRER1A -0.63 0.3 -0.34
43 AT5G22720 F-box/RNI-like superfamily protein 0.63 0.3 -0.29
44 AT5G55820 CONTAINS InterPro DOMAIN/s: Inner centromere protein,
ARK-binding region (InterPro:IPR005635); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 WYRD 0.62 0.32 -0.31
45 AT3G27570 Sucrase/ferredoxin-like family protein -0.62 0.31 -0.31
46 AT3G54420 homolog of carrot EP3-3 chitinase CHITINASE CLASS IV, homolog of
carrot EP3-3 chitinase, CHIV,
homolog of carrot EP3-3 chitinase		 -0.62 0.3 -0.33
47 AT5G03130 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.33 -0.32
48 AT5G56160 Sec14p-like phosphatidylinositol transfer family protein 0.62 0.34 -0.32
49 AT1G69190 Dihydropterin pyrophosphokinase / Dihydropteroate synthase 0.62 0.31 -0.32
50 AT2G30970 aspartate aminotransferase 1 aspartate aminotransferase 1 -0.61 0.29 -0.31
51 AT3G05490 ralf-like 22 ralf-like 22 -0.61 0.33 -0.31
52 AT4G12490 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.61 0.3 -0.33
53 AT5G49440 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.61 0.33 -0.33
54 AT2G46170 Reticulon family protein -0.61 0.32 -0.32
55 AT4G31940 cytochrome P450, family 82, subfamily C, polypeptide 4 cytochrome P450, family 82,
subfamily C, polypeptide 4		 0.61 0.3 -0.31
56 AT3G15710 Peptidase S24/S26A/S26B/S26C family protein -0.61 0.33 -0.31
57 AT2G44990 carotenoid cleavage dioxygenase 7 ATCCD7, carotenoid cleavage
dioxygenase 7, MAX3		 0.61 0.31 -0.31
58 AT3G08640 Protein of unknown function (DUF3411) -0.6 0.31 -0.32
59 AT5G25140 cytochrome P450, family 71, subfamily B, polypeptide 13 cytochrome P450, family 71,
subfamily B, polypeptide 13		 -0.6 0.31 -0.32
60 AT2G13150 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.6 0.32 -0.34
61 AT1G77590 long chain acyl-CoA synthetase 9 long chain acyl-CoA synthetase 9 0.6 0.29 -0.33
62 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.6 0.31 -0.3
63 AT5G16060 Cytochrome c oxidase biogenesis protein Cmc1-like -0.6 0.33 -0.33
64 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 0.6 0.31 -0.3
65 AT1G05720 selenoprotein family protein -0.6 0.33 -0.3
66 AT1G57943 purine permease 17 purine permease 17, purine
permease 17		 0.6 0.33 -0.32
67 AT3G57340 Heat shock protein DnaJ, N-terminal with domain of unknown
function (DUF1977)		 -0.6 0.33 -0.29
68 AT5G04390 C2H2-type zinc finger family protein -0.6 0.32 -0.29
69 AT5G21130 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.6 0.32 -0.29
70 AT5G07960 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0139
(InterPro:IPR005351); Has 193 Blast hits to 193 proteins in
75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi
- 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 -0.6 0.3 -0.32
71 AT4G21550 VP1/ABI3-like 3 VP1/ABI3-like 3 0.59 0.32 -0.33
72 AT2G43260 F-box and associated interaction domains-containing protein -0.59 0.31 -0.31
73 AT3G53880 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C11		 -0.59 0.3 -0.31
74 AT5G09450 Tetratricopeptide repeat (TPR)-like superfamily protein -0.59 0.32 -0.31
75 AT5G20500 Glutaredoxin family protein -0.59 0.32 -0.3
76 AT1G19390 Wall-associated kinase family protein 0.59 0.32 -0.3
77 AT5G10880 tRNA synthetase-related / tRNA ligase-related 0.59 0.33 -0.31
78 AT2G27395 pseudogene of cysteine protease-related 0.59 0.29 -0.31
79 AT5G44730 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.59 0.31 -0.34
80 AT2G27900 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein
sorting-associated protein 54 (InterPro:IPR019515); Has 316
Blast hits to 252 proteins in 92 species: Archae - 0;
Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.59 0.3 -0.31
81 AT3G43940 unknown protein; Has 24 Blast hits to 24 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.58 0.33 -0.32
82 AT3G22700 F-box and associated interaction domains-containing protein -0.58 0.34 -0.33
83 AT2G47230 DOMAIN OF UNKNOWN FUNCTION 724 6 DOMAIN OF UNKNOWN FUNCTION 724 6,
DOMAIN OF UNKNOWN FUNCTION 724 6		 0.58 0.3 -0.32
84 AT1G34545 transposable element gene 0.58 0.33 -0.31
85 AT2G26440 Plant invertase/pectin methylesterase inhibitor superfamily -0.58 0.31 -0.32
86 AT5G54970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G26960.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.58 0.32 -0.32
87 AT5G62960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.58 0.32 -0.31
88 AT1G07485 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: shoot apex,
embryo, leaf whorl, pedicel; EXPRESSED DURING: 4 anthesis,
D bilateral stage; Has 5 Blast hits to 5 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.58 0.31 -0.3
89 AT4G11745 Galactose oxidase/kelch repeat superfamily protein 0.58 0.3 -0.33
90 AT1G31940 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.32 -0.3
91 AT5G60070 ankyrin repeat family protein 0.58 0.3 -0.32
92 AT4G08670 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.58 0.3 -0.31
93 AT1G55190 PRA1 (Prenylated rab acceptor) family protein PRENYLATED RAB ACCEPTOR 1.F2, PRA7 -0.57 0.31 -0.33
94 AT1G51540 Galactose oxidase/kelch repeat superfamily protein -0.57 0.32 -0.3
95 AT5G26640 BEST Arabidopsis thaliana protein match is:
anaphase-promoting complex/cyclosome 11 (TAIR:AT3G05870.2);
Has 293 Blast hits to 293 proteins in 137 species: Archae -
0; Bacteria - 0; Metazoa - 128; Fungi - 102; Plants - 41;
Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).		 0.57 0.32 -0.32
96 AT5G39910 Pectin lyase-like superfamily protein 0.57 0.31 -0.33
97 AT4G14050 Pentatricopeptide repeat (PPR) superfamily protein -0.57 0.31 -0.32
98 AT1G21430 Flavin-binding monooxygenase family protein YUC11 0.57 0.32 -0.32
99 AT1G69960 serine/threonine protein phosphatase 2A serine/threonine protein
phosphatase 2A		 -0.57 0.31 -0.33
100 AT4G12650 Endomembrane protein 70 protein family -0.57 0.32 -0.31
101 AT1G04260 CAMV movement protein interacting protein 7 CAMV movement protein interacting
protein 7, CAMV MOVEMENT PROTEIN
INTERACTING PROTEIN 7, PRENYLATED
RAB ACCEPTOR 1.D		 -0.57 0.31 -0.32
102 AT5G44030 cellulose synthase A4 cellulose synthase A4, IRREGULAR
XYLEM 5, NWS2		 0.57 0.31 -0.31
103 AT5G14720 Protein kinase superfamily protein 0.57 0.33 -0.33
104 AT4G10750 Phosphoenolpyruvate carboxylase family protein -0.57 0.31 -0.32
105 AT4G09570 calcium-dependent protein kinase 4 ATCPK4, calcium-dependent protein
kinase 4		 -0.57 0.35 -0.33
106 AT4G32270 Ubiquitin-like superfamily protein 0.57 0.33 -0.33
107 AT5G39250 F-box family protein -0.56 0.32 -0.32
108 AT2G10460 transposable element gene -0.56 0.31 -0.32
109 AT2G04550 indole-3-butyric acid response 5 DUAL SPECIFICITY PROTEIN
PHOSPHATASE 1E, indole-3-butyric
acid response 5		 -0.56 0.31 -0.31
110 AT3G53340 nuclear factor Y, subunit B10 nuclear factor Y, subunit B10 -0.56 0.33 -0.32
111 AT3G59900 auxin-regulated gene involved in organ size AUXIN-REGULATED GENE INVOLVED IN
ORGAN SIZE		 -0.56 0.35 -0.31
112 AT3G15970 NUP50 (Nucleoporin 50 kDa) protein -0.56 0.3 -0.31
113 AT2G42940 Predicted AT-hook DNA-binding family protein -0.56 0.32 -0.3
114 AT5G55050 GDSL-like Lipase/Acylhydrolase superfamily protein -0.56 0.31 -0.31
115 AT5G60250 zinc finger (C3HC4-type RING finger) family protein -0.56 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
116 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.83 0.45 -0.44 C0234
117 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.73 0.43 -0.46 C0056
118 C0162 MST_1588.3 - - - 0.73 0.46 -0.47
119 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.73 0.43 -0.45 C0087
120 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.72 0.43 -0.46 C0032
121 C0063 Campesterol - Campesterol brassinosteroid biosynthesis I,
brassinosteroid biosynthesis II,
plant sterol biosynthesis,
brassinosteroid biosynthesis III 		0.7 0.47 -0.46 C0063
122 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.7 0.46 -0.45 C0053
123 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway 0.68 0.31 -0.3 C0218
124 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.67 0.42 -0.45
125 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		0.66 0.43 -0.44 C0011
126 C0006 β-Homothreonine L-β-Homothreonine - - 0.64 0.48 -0.46
127 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		0.6 0.46 -0.41 C0027
128 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II 0.59 0.3 -0.3 C0097
129 C0142 Malonic acid - Malonate fatty acid biosynthesis (plant mitochondria) 0.57 0.3 -0.31 C0142
130 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		0.57 0.33 -0.32 C0005