AT4G38940 : -
Query Information
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AGICode AT4G38940
Description Galactose oxidase/kelch repeat superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G38940 Galactose oxidase/kelch repeat superfamily protein 1 0.32 -0.3
2 AT2G34840 Coatomer epsilon subunit -0.67 0.33 -0.31
3 AT3G26310 cytochrome P450, family 71, subfamily B, polypeptide 35 cytochrome P450, family 71,
subfamily B, polypeptide 35		 -0.63 0.32 -0.32
4 AT1G43770 RING/FYVE/PHD zinc finger superfamily protein -0.61 0.29 -0.33
5 AT3G25600 Calcium-binding EF-hand family protein 0.6 0.32 -0.34
6 AT5G18870 Inosine-uridine preferring nucleoside hydrolase family
protein		 nucleoside hydrolase 5 -0.59 0.31 -0.32
7 AT2G07230 transposable element gene -0.59 0.31 -0.3
8 AT5G59450 GRAS family transcription factor 0.59 0.31 -0.29
9 AT2G42480 TRAF-like family protein -0.58 0.32 -0.32
10 AT1G30370 alpha/beta-Hydrolases superfamily protein DAD1-like acylhydrolase 0.58 0.33 -0.32
11 AT5G02910 F-box/RNI-like superfamily protein 0.57 0.32 -0.32
12 AT2G29580 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5B -0.57 0.32 -0.31
13 AT3G29380 Cyclin-like family protein plant-specific TFIIB-related
protein 2		 -0.57 0.33 -0.32
14 AT1G19200 Protein of unknown function (DUF581) -0.56 0.32 -0.33
15 AT3G13730 cytochrome P450, family 90, subfamily D, polypeptide 1 cytochrome P450, family 90,
subfamily D, polypeptide 1		 0.56 0.29 -0.33
16 AT2G16960 ARM repeat superfamily protein -0.55 0.31 -0.32
17 AT1G68840 related to ABI3/VP1 2 AtRAV2, ETHYLENE RESPONSE DNA
BINDING FACTOR 2, RELATED TO AP2
8, related to ABI3/VP1 2,
TEMPRANILLO 2		 0.55 0.3 -0.31
18 AT3G19540 Protein of unknown function (DUF620) 0.55 0.34 -0.32
19 AT5G44760 C2 domain-containing protein -0.55 0.31 -0.31
20 AT5G40250 RING/U-box superfamily protein 0.54 0.31 -0.32
21 AT4G39570 Galactose oxidase/kelch repeat superfamily protein 0.54 0.28 -0.31
22 AT3G60200 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G44600.1); Has 60 Blast hits
to 60 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 8; Fungi - 0; Plants - 51; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 0.54 0.31 -0.31
23 AT1G32670 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.54 0.33 -0.31
24 AT5G45710 winged-helix DNA-binding transcription factor family
protein		 HEAT SHOCK TRANSCRIPTION FACTOR
A4C, HEAT SHOCK TRANSCRIPTION
FACTOR A4C, ROOT HANDEDNESS 1		 0.54 0.33 -0.33
25 AT1G49840 Protein of unknown function (DUF620) 0.54 0.31 -0.29
26 AT2G47340 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.53 0.31 -0.32
27 AT5G55330 MBOAT (membrane bound O-acyl transferase) family protein -0.53 0.32 -0.3
28 AT4G09480 transposable element gene -0.52 0.32 -0.3
29 AT1G32880 ARM repeat superfamily protein 0.51 0.31 -0.32
30 AT2G03210 fucosyltransferase 2 ATFUT2, fucosyltransferase 2 -0.51 0.34 -0.29
31 AT2G04660 anaphase-promoting complex/cyclosome 2 anaphase-promoting
complex/cyclosome 2		 -0.51 0.32 -0.29
32 AT1G33220 Glycosyl hydrolase superfamily protein -0.51 0.32 -0.3
33 AT3G18660 plant glycogenin-like starch initiation protein 1 glucuronic acid substitution of
xylan 1, plant glycogenin-like
starch initiation protein 1		 -0.51 0.3 -0.3
34 AT5G10220 annexin 6 annexin 6, ANNEXIN ARABIDOPSIS
THALIANA 6		 0.51 0.34 -0.32
35 AT5G51020 crumpled leaf constitutive activator of
AAA-ATPase, CRUMPLED LEAF		 -0.5 0.31 -0.31
36 AT3G51190 Ribosomal protein L2 family -0.5 0.33 -0.32
37 AT2G39550 Prenyltransferase family protein GERANYLGERANYLTRANSFERASE-I BETA
SUBUNIT, GGB, PGGT-I		 -0.5 0.33 -0.33
38 AT2G04370 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.5 0.33 -0.3
39 AT5G09930 ABC transporter family protein ATP-binding cassette F2 -0.5 0.3 -0.31
40 AT1G31350 KAR-UP F-box 1 KAR-UP F-box 1 0.5 0.32 -0.33
41 AT5G18360 Disease resistance protein (TIR-NBS-LRR class) family -0.49 0.33 -0.31
42 AT1G75050 Pathogenesis-related thaumatin superfamily protein -0.49 0.31 -0.32
43 AT5G06500 AGAMOUS-like 96 AGAMOUS-like 96 0.48 0.33 -0.32
44 AT3G06433 pseudogene of nodulin MtN3 family protein -0.48 0.31 -0.32
45 AT2G04840 Protein of unknown function (DUF295) 0.48 0.32 -0.31
46 AT2G46960 cytochrome P450, family 709, subfamily B, polypeptide 1 cytochrome P450, family 709,
subfamily B, polypeptide 1		 -0.47 0.32 -0.31
47 AT5G11400 Protein kinase superfamily protein 0.47 0.3 -0.33
48 AT1G61210 Transducin/WD40 repeat-like superfamily protein DWD hypersensitive to ABA 3 -0.46 0.32 -0.33
49 AT3G04410 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 0.46 0.29 -0.31
50 AT5G28270 transposable element gene 0.46 0.3 -0.31
51 AT2G26810 Putative methyltransferase family protein -0.46 0.31 -0.33
52 AT5G46640 AT hook motif DNA-binding family protein 0.46 0.31 -0.33
53 AT5G40430 myb domain protein 22 myb domain protein 22, myb domain
protein 22		 0.46 0.32 -0.32
54 AT3G31403 transposable element gene 0.45 0.31 -0.32
55 AT4G19730 Glycosyl hydrolase superfamily protein 0.45 0.3 -0.31
56 AT4G08530 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.45 0.29 -0.33
57 AT1G74150 Galactose oxidase/kelch repeat superfamily protein 0.44 0.33 -0.31
58 AT1G01530 AGAMOUS-like 28 AGAMOUS-like 28 0.43 0.3 -0.31
59 AT1G12970 plant intracellular ras group-related LRR 3 plant intracellular ras
group-related LRR 3		 0.43 0.3 -0.31
60 AT3G20760 Nse4, component of Smc5/6 DNA repair complex 0.43 0.32 -0.31
61 AT3G17220 pectin methylesterase inhibitor 2 ATPMEI2, pectin methylesterase
inhibitor 2		 0.43 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
62 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis -0.81 0.48 -0.47 C0234
63 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		-0.8 0.47 -0.46 C0056
64 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine -0.8 0.4 -0.47 C0030
65 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) -0.79 0.45 -0.44 C0099
66 C0006 β-Homothreonine L-β-Homothreonine - - -0.74 0.42 -0.44
67 C0094 Galactosamine D-Galactosamine - - -0.72 0.45 -0.45
68 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		-0.72 0.42 -0.44 C0087
69 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		-0.71 0.41 -0.42 C0261
70 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis -0.7 0.42 -0.46
71 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		-0.68 0.44 -0.46 C0262
72 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		-0.67 0.44 -0.49 C0186
73 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		-0.67 0.44 -0.45 C0032
74 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		-0.66 0.42 -0.45 C0011
75 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		-0.65 0.44 -0.44 C0015
76 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) -0.65 0.44 -0.45 C0075
77 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		-0.64 0.45 -0.48 C0091
78 C0113 Histidinol - Histidinol histidine biosynthesis -0.62 0.32 -0.29 C0113
79 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		-0.62 0.46 -0.44 C0088
80 C0259 Tyramine - Tyramine hydroxycinnamic acid tyramine amides biosynthesis,
suberin biosynthesis 		-0.61 0.32 -0.3 C0259
81 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.59 0.45 -0.45 C0073
82 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		-0.59 0.44 -0.44 C0027
83 C0114 Homocystine L-Homocystine - - -0.55 0.32 -0.32
84 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		-0.55 0.32 -0.32 C0005
85 C0062 Betain - - - -0.52 0.32 -0.32
86 C0066 Choline - Choline choline biosynthesis III,
phosphatidylcholine biosynthesis I,
choline biosynthesis I,
glycine betaine biosynthesis III (plants),
choline biosynthesis II,
sinapate ester biosynthesis,
phospholipases 		-0.52 0.32 -0.32 C0066
87 C0112 Histidine L-Histidine L-Histidine tRNA charging,
histidine biosynthesis 		-0.51 0.31 -0.34 C0112
88 C0013 N2-Acetyl-Ornithine N2-Acetyl-L-ornithine N-acetyl-L-ornithine arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		-0.49 0.31 -0.35 C0013