AT3G06433 : -
Query Information
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AGICode AT3G06433
Description pseudogene of nodulin MtN3 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G06433 pseudogene of nodulin MtN3 family protein 1 0.3 -0.31
2 AT1G58160 Mannose-binding lectin superfamily protein 0.75 0.3 -0.3
3 AT4G12460 OSBP(oxysterol binding protein)-related protein 2B OSBP(oxysterol binding
protein)-related protein 2B		 0.74 0.3 -0.31
4 AT5G38210 Protein kinase family protein 0.73 0.33 -0.32
5 AT4G00650 FRIGIDA-like protein FLOWERING LOCUS A, FRIGIDA 0.7 0.3 -0.32
6 AT5G20710 beta-galactosidase 7 beta-galactosidase 7 0.68 0.32 -0.32
7 AT1G60710 NAD(P)-linked oxidoreductase superfamily protein ATB2 0.67 0.31 -0.31
8 AT5G03200 RING/U-box superfamily protein 0.67 0.33 -0.3
9 AT4G32960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits
to 106 proteins in 39 species: Archae - 0; Bacteria - 0;
Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 0.67 0.33 -0.3
10 AT5G42280 Cysteine/Histidine-rich C1 domain family protein 0.66 0.33 -0.28
11 AT5G40500 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.66 0.31 -0.33
12 AT2G15042 Leucine-rich repeat (LRR) family protein 0.65 0.32 -0.3
13 AT5G22510 alkaline/neutral invertase alkaline/neutral invertase E,
Arabidopsis alkaline/neutral
invertase E, alkaline/neutral
invertase E		 0.65 0.31 -0.34
14 AT4G24390 RNI-like superfamily protein auxin signaling F-box 4 0.64 0.28 -0.29
15 AT3G29380 Cyclin-like family protein plant-specific TFIIB-related
protein 2		 0.64 0.31 -0.31
16 AT1G43770 RING/FYVE/PHD zinc finger superfamily protein 0.63 0.33 -0.31
17 AT4G21650 Subtilase family protein 0.63 0.31 -0.29
18 AT4G16020 transposable element gene 0.63 0.34 -0.32
19 AT2G47340 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.62 0.32 -0.32
20 AT4G08110 transposable element gene 0.62 0.3 -0.28
21 AT1G58270 TRAF-like family protein ZW9 0.62 0.3 -0.33
22 AT4G09680 conserved telomere maintenance component 1 ATCTC1, conserved telomere
maintenance component 1		 0.62 0.32 -0.31
23 AT5G59450 GRAS family transcription factor -0.62 0.29 -0.3
24 AT2G29580 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5B 0.62 0.34 -0.32
25 AT1G33920 phloem protein 2-A4 phloem protein 2-A4, phloem
protein 2-A4		 0.62 0.31 -0.31
26 AT1G61210 Transducin/WD40 repeat-like superfamily protein DWD hypersensitive to ABA 3 0.61 0.32 -0.3
27 AT5G60470 C2H2 and C2HC zinc fingers superfamily protein 0.61 0.33 -0.33
28 AT2G34840 Coatomer epsilon subunit 0.6 0.33 -0.32
29 AT4G01910 Cysteine/Histidine-rich C1 domain family protein 0.6 0.32 -0.29
30 AT4G27050 F-box/RNI-like superfamily protein -0.6 0.31 -0.32
31 AT5G14510 ARM repeat superfamily protein 0.59 0.31 -0.32
32 AT4G13460 SU(VAR)3-9 homolog 9 SETDOMAIN GROUP 22, SET22,
SU(VAR)3-9 homolog 9		 0.58 0.32 -0.33
33 AT1G62510 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.58 0.31 -0.31
34 AT1G63050 MBOAT (membrane bound O-acyl transferase) family protein -0.58 0.34 -0.32
35 AT3G09640 ascorbate peroxidase 2 ASCORBATE PEROXIDASE 1B, ascorbate
peroxidase 2		 0.58 0.31 -0.32
36 AT5G08335 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ARABIDOPSIS THALIANA ISOPRENYL
CYSTEINE METHYLTRANSFERASE B,
ATSTE14B, ISOPRENYL CYSTEINE
METHYLTRANSFERASE B		 -0.58 0.31 -0.3
37 AT2G01500 Homeodomain-like superfamily protein HIGH EXPRESSION OF OSMOTICALLY
RESPONSIVE GENE 9, PRETTY FEW
SEEDS 2, WUSCHEL RELATED HOMEOBOX
6		 0.58 0.31 -0.31
38 AT5G25380 cyclin a2;1 cyclin a2;1 0.58 0.34 -0.31
39 AT3G56270 Plant protein of unknown function (DUF827) 0.57 0.32 -0.3
40 AT5G24070 Peroxidase superfamily protein -0.57 0.31 -0.33
41 AT5G35730 EXS (ERD1/XPR1/SYG1) family protein 0.57 0.32 -0.33
42 AT1G60995 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s:
Membralin (InterPro:IPR019144); Has 172 Blast hits to 170
proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa -
110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes
- 24 (source: NCBI BLink).		 -0.57 0.3 -0.32
43 AT5G07850 HXXXD-type acyl-transferase family protein 0.57 0.33 -0.31
44 AT1G77080 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 27, FLOWERING LOCUS
M, MADS AFFECTING FLOWERING 1		 0.57 0.31 -0.31
45 AT1G65280 DNAJ heat shock N-terminal domain-containing protein 0.57 0.31 -0.33
46 AT1G17615 Disease resistance protein (TIR-NBS class) 0.56 0.31 -0.32
47 AT5G08080 syntaxin of plants 132 ATSYP132, syntaxin of plants 132 -0.56 0.31 -0.3
48 AT5G20070 nudix hydrolase homolog 19 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 19, nudix
hydrolase homolog 19, nudix
hydrolase homolog 19		 0.56 0.32 -0.29
49 AT5G05870 UDP-glucosyl transferase 76C1 UDP-glucosyl transferase 76C1 0.56 0.31 -0.31
50 AT3G50720 Protein kinase superfamily protein 0.55 0.31 -0.32
51 AT2G20380 Galactose oxidase/kelch repeat superfamily protein 0.55 0.3 -0.31
52 AT3G30340 nodulin MtN21 /EamA-like transporter family protein 0.55 0.32 -0.32
53 AT2G16960 ARM repeat superfamily protein 0.55 0.31 -0.31
54 AT1G66030 cytochrome P450, family 96, subfamily A, polypeptide 14
pseudogene		 cytochrome P450, family 96,
subfamily A, polypeptide 14
pseudogene		 -0.54 0.3 -0.27
55 AT2G05390 transposable element gene 0.54 0.31 -0.32
56 AT2G27180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits
to 99 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.54 0.35 -0.3
57 AT4G12270 Copper amine oxidase family protein -0.54 0.32 -0.32
58 AT1G11990 O-fucosyltransferase family protein 0.54 0.31 -0.31
59 AT1G50970 Membrane trafficking VPS53 family protein 0.54 0.33 -0.35
60 AT5G19200 NAD(P)-binding Rossmann-fold superfamily protein TSC10B 0.54 0.31 -0.32
61 AT4G08480 mitogen-activated protein kinase kinase kinase 9 mitogen-activated protein kinase
kinase kinase 9, MAPK/ERK KINASE
KINASE 2		 0.54 0.33 -0.31
62 AT1G67730 beta-ketoacyl reductase 1 ATKCR1, beta-ketoacyl reductase 1,
YBR159		 0.54 0.3 -0.31
63 AT1G39350 transposable element gene 0.54 0.32 -0.32
64 AT5G45690 Protein of unknown function (DUF1264) 0.53 0.31 -0.33
65 AT1G70080 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.53 0.32 -0.31
66 AT5G35660 Glycine-rich protein family 0.53 0.33 -0.35
67 AT3G10120 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03890.1); Has 57 Blast hits
to 57 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.53 0.33 -0.31
68 AT5G09640 serine carboxypeptidase-like 19 serine carboxypeptidase-like 19,
SINAPOYLGLUCOSE ACCUMULATOR 2		 0.53 0.31 -0.35
69 AT1G36550 transposable element gene 0.53 0.3 -0.33
70 AT4G05260 Ubiquitin-like superfamily protein 0.52 0.32 -0.33
71 AT5G65500 U-box domain-containing protein kinase family protein 0.52 0.31 -0.33
72 AT5G41620 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast, plasma
membrane; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: 6 growth stages; BEST Arabidopsis thaliana protein
match is: intracellular protein transport protein
USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.52 0.29 -0.31
73 AT5G38350 Disease resistance protein (NBS-LRR class) family 0.52 0.32 -0.33
74 AT5G40260 Nodulin MtN3 family protein AtSWEET8, SWEET8 0.52 0.31 -0.32
75 AT5G66360 Ribosomal RNA adenine dimethylase family protein adenosine dimethyl transferase 1B -0.52 0.34 -0.34
76 AT5G35540 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G27260.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.52 0.32 -0.3
77 AT5G55350 MBOAT (membrane bound O-acyl transferase) family protein 0.52 0.27 -0.31
78 AT1G50960 gibberellin 2-oxidase 7 ARABIDOPSIS THALIANA GIBBERELLIN
2-OXIDASE 7, gibberellin 2-oxidase
7		 0.52 0.3 -0.32
79 AT5G02910 F-box/RNI-like superfamily protein -0.51 0.31 -0.35
80 AT4G05370 BCS1 AAA-type ATPase -0.51 0.32 -0.34
81 AT1G22900 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.51 0.32 -0.31
82 AT4G09080 Outer membrane OMP85 family protein TRANSLOCON OUTER MEMBRANE COMPLEX
75-IV, translocon at the outer
envelope membrane of chloroplasts
75-IV		 -0.51 0.3 -0.31
83 AT5G49530 SIN-like family protein -0.51 0.31 -0.32
84 AT4G39380 BEST Arabidopsis thaliana protein match is: TSL-kinase
interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits
to 74 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.5 0.32 -0.34
85 AT1G20780 senescence-associated E3 ubiquitin ligase 1 ARABIDOPSIS THALIANA PLANT U-BOX
44, PLANT U-BOX 44,
senescence-associated E3 ubiquitin
ligase 1		 -0.5 0.32 -0.3
86 AT4G38940 Galactose oxidase/kelch repeat superfamily protein -0.48 0.31 -0.3
87 AT1G11340 S-locus lectin protein kinase family protein -0.48 0.31 -0.31
88 AT5G64890 elicitor peptide 2 precursor elicitor peptide 2 precursor -0.48 0.31 -0.32
89 AT2G23210 UDP-Glycosyltransferase superfamily protein -0.47 0.31 -0.33
90 AT1G09360 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.47 0.32 -0.32
91 AT4G26040 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.46 0.3 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
92 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.85 0.45 -0.43 C0056
93 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.83 0.44 -0.43 C0234
94 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.78 0.42 -0.43 C0099
95 C0094 Galactosamine D-Galactosamine - - 0.78 0.41 -0.43
96 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.77 0.44 -0.44 C0030
97 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		0.75 0.46 -0.46 C0186
98 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.75 0.44 -0.45 C0261
99 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.74 0.41 -0.41 C0032
100 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		0.74 0.41 -0.43 C0057
101 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.69 0.47 -0.45 C0053
102 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.67 0.44 -0.43 C0262
103 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.66 0.46 -0.45 C0087
104 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.65 0.42 -0.44 C0075
105 C0006 β-Homothreonine L-β-Homothreonine - - 0.64 0.43 -0.44
106 C0116 Hydroxylamine - Hydroxylamine - 0.54 0.46 -0.44 C0116