AT3G29380 : plant-specific TFIIB-related protein 2
Query Information
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AGICode AT3G29380
Description Cyclin-like family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G29380 Cyclin-like family protein plant-specific TFIIB-related
protein 2		 1 0.32 -0.32
2 AT5G04900 NYC1-like NYC1-like 0.71 0.34 -0.32
3 AT5G51020 crumpled leaf constitutive activator of
AAA-ATPase, CRUMPLED LEAF		 0.71 0.34 -0.33
4 AT4G36880 cysteine proteinase1 cysteine proteinase1 -0.71 0.3 -0.3
5 AT3G56270 Plant protein of unknown function (DUF827) 0.7 0.31 -0.34
6 AT4G03520 Thioredoxin superfamily protein ATHM2 0.68 0.31 -0.31
7 AT3G26310 cytochrome P450, family 71, subfamily B, polypeptide 35 cytochrome P450, family 71,
subfamily B, polypeptide 35		 0.68 0.33 -0.32
8 AT2G15042 Leucine-rich repeat (LRR) family protein 0.67 0.31 -0.32
9 AT5G37870 Protein with RING/U-box and TRAF-like domains 0.67 0.31 -0.34
10 AT3G43170 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF295 (InterPro:IPR005174); BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF295) (TAIR:AT5G54330.1); Has 90 Blast hits to
90 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink).		 0.67 0.3 -0.32
11 AT2G29580 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5B 0.66 0.32 -0.31
12 AT1G43770 RING/FYVE/PHD zinc finger superfamily protein 0.65 0.32 -0.31
13 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 0.65 0.31 -0.3
14 AT4G10030 alpha/beta-Hydrolases superfamily protein 0.65 0.34 -0.33
15 AT1G30370 alpha/beta-Hydrolases superfamily protein DAD1-like acylhydrolase -0.65 0.31 -0.3
16 AT3G06433 pseudogene of nodulin MtN3 family protein 0.64 0.32 -0.33
17 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.64 0.31 -0.29
18 AT2G47340 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.63 0.31 -0.32
19 AT2G34840 Coatomer epsilon subunit 0.63 0.3 -0.29
20 AT2G36030 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.63 0.32 -0.32
21 AT2G35580 Serine protease inhibitor (SERPIN) family protein 0.63 0.31 -0.32
22 AT3G04390 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin
binding protein		 0.63 0.3 -0.31
23 AT3G06710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
RING/FYVE/PHD zinc finger superfamily protein
(TAIR:AT4G32670.1); Has 15 Blast hits to 15 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.33 -0.33
24 AT3G15280 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant
structures; EXPRESSED DURING: L mature pollen stage, 4
anthesis, petal differentiation and expansion stage; Has 36
Blast hits to 36 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.62 0.32 -0.31
25 AT5G51320 transposable element gene 0.62 0.29 -0.31
26 AT2G22850 basic leucine-zipper 6 basic leucine-zipper 6, basic
leucine-zipper 6		 -0.62 0.33 -0.32
27 AT5G63200 tetratricopeptide repeat (TPR)-containing protein 0.62 0.33 -0.3
28 AT4G09480 transposable element gene 0.61 0.32 -0.3
29 AT5G08080 syntaxin of plants 132 ATSYP132, syntaxin of plants 132 -0.61 0.31 -0.33
30 AT5G05290 expansin A2 ATEXP2, expansin A2, ATHEXP ALPHA
1.12, EXPANSIN 2, expansin A2		 -0.6 0.32 -0.33
31 AT3G50720 Protein kinase superfamily protein 0.6 0.32 -0.32
32 AT3G46910 Cullin family protein 0.6 0.3 -0.32
33 AT4G13980 winged-helix DNA-binding transcription factor family
protein		 AT-HSFA5, HEAT SHOCK TRANSCRIPTION
FACTOR A5		 0.6 0.33 -0.34
34 AT5G16460 Putative adipose-regulatory protein (Seipin) 0.6 0.3 -0.3
35 AT5G55350 MBOAT (membrane bound O-acyl transferase) family protein 0.6 0.32 -0.33
36 AT3G48960 Ribosomal protein L13e family protein -0.59 0.3 -0.32
37 AT1G77410 beta-galactosidase 16 beta-galactosidase 16 0.59 0.29 -0.31
38 AT3G26860 Plant self-incompatibility protein S1 family 0.59 0.29 -0.3
39 AT1G48010 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.58 0.31 -0.3
40 AT4G37050 PATATIN-like protein 4 phospholipase A IVC, PLA V,
patatin-related phospholipase III
beta, PATATIN-like protein 4		 0.58 0.33 -0.32
41 AT4G13810 receptor like protein 47 receptor like protein 47, receptor
like protein 47		 0.58 0.3 -0.29
42 AT4G35520 MUTL protein homolog 3 ATMLH3, MUTL protein homolog 3 -0.57 0.33 -0.3
43 AT5G39910 Pectin lyase-like superfamily protein 0.57 0.3 -0.31
44 AT2G42480 TRAF-like family protein 0.57 0.33 -0.29
45 AT2G36040 transposable element gene 0.57 0.32 -0.29
46 AT4G32180 pantothenate kinase 2 pantothenate kinase 2,
pantothenate kinase 2		 -0.57 0.31 -0.32
47 AT4G38940 Galactose oxidase/kelch repeat superfamily protein -0.57 0.29 -0.31
48 AT1G11340 S-locus lectin protein kinase family protein -0.57 0.35 -0.31
49 AT3G18930 RING/U-box superfamily protein 0.57 0.33 -0.31
50 AT1G33920 phloem protein 2-A4 phloem protein 2-A4, phloem
protein 2-A4		 0.57 0.32 -0.32
51 AT2G10465 transposable element gene 0.56 0.33 -0.31
52 AT5G18870 Inosine-uridine preferring nucleoside hydrolase family
protein		 nucleoside hydrolase 5 0.56 0.32 -0.32
53 AT3G57980 DNA-binding bromodomain-containing protein 0.56 0.32 -0.3
54 AT1G30790 F-box and associated interaction domains-containing protein 0.56 0.32 -0.32
55 AT4G18400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.56 0.3 -0.3
56 AT5G34460 transposable element gene 0.55 0.33 -0.34
57 AT1G71470 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22090.1); Has 11 Blast hits
to 11 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.55 0.31 -0.31
58 AT1G03390 HXXXD-type acyl-transferase family protein 0.55 0.34 -0.33
59 AT2G28330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G08035.1); Has 18 Blast hits
to 18 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.55 0.3 -0.33
60 AT5G38210 Protein kinase family protein 0.55 0.32 -0.3
61 AT5G48100 Laccase/Diphenol oxidase family protein ATLAC15, LACCASE-LIKE 15,
TRANSPARENT TESTA 10		 -0.55 0.3 -0.32
62 AT5G59370 actin 4 actin 4 0.55 0.29 -0.33
63 AT3G10880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G05180.1); Has 15699 Blast
hits to 11378 proteins in 1134 species: Archae - 391;
Bacteria - 2054; Metazoa - 6851; Fungi - 1354; Plants -
1096; Viruses - 119; Other Eukaryotes - 3834 (source: NCBI
BLink).		 0.55 0.31 -0.35
64 AT5G64890 elicitor peptide 2 precursor elicitor peptide 2 precursor -0.55 0.31 -0.31
65 AT1G44318 Aldolase superfamily protein hemb2 0.54 0.29 -0.31
66 AT5G45690 Protein of unknown function (DUF1264) 0.54 0.31 -0.32
67 AT5G02910 F-box/RNI-like superfamily protein -0.54 0.32 -0.31
68 AT2G26720 Cupredoxin superfamily protein -0.54 0.32 -0.32
69 AT2G19330 plant intracellular ras group-related LRR 6 plant intracellular ras
group-related LRR 6		 0.54 0.3 -0.32
70 AT1G71380 cellulase 3 cellulase 3, ARABIDOPSIS THALIANA
GLYCOSYL HYDROLASE 9B3, cellulase
3		 -0.54 0.32 -0.31
71 AT4G03153 Kinase interacting (KIP1-like) family protein 0.54 0.33 -0.31
72 AT2G27180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits
to 99 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.54 0.32 -0.31
73 AT2G40740 WRKY DNA-binding protein 55 WRKY DNA-BINDING PROTEIN 55, WRKY
DNA-binding protein 55		 -0.54 0.32 -0.31
74 AT1G50960 gibberellin 2-oxidase 7 ARABIDOPSIS THALIANA GIBBERELLIN
2-OXIDASE 7, gibberellin 2-oxidase
7		 0.54 0.31 -0.3
75 AT5G61865 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.54 0.31 -0.32
76 AT5G19200 NAD(P)-binding Rossmann-fold superfamily protein TSC10B 0.54 0.32 -0.31
77 AT4G05370 BCS1 AAA-type ATPase -0.52 0.32 -0.32
78 AT1G35410 Protein of unknown function (DUF1184) -0.52 0.3 -0.32
79 AT4G09130 RING/U-box superfamily protein -0.51 0.32 -0.33
80 AT4G22020 pseudogene, hypothetical protein, similar to
uncharacterized glycine-rich protein (GI:7269047)
{Arabidopsis thaliana}		 -0.5 0.33 -0.31
81 AT5G53480 ARM repeat superfamily protein -0.5 0.33 -0.3
82 AT4G25200 mitochondrion-localized small heat shock protein 23.6 mitochondrion-localized small heat
shock protein 23.6,
mitochondrion-localized small heat
shock protein 23.6		 -0.5 0.29 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
83 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.74 0.43 -0.43 C0234
84 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.72 0.48 -0.46 C0099
85 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.71 0.44 -0.45 C0056
86 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		0.71 0.44 -0.43 C0186
87 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		0.62 0.31 -0.32 C0005