AT1G71770 : poly(A)-binding protein 5
Query Information
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AGICode AT1G71770
Description poly(A)-binding protein 5
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G71770 poly(A)-binding protein 5 poly(A)-binding protein 5 1 0.32 -0.32
2 AT3G54010 FKBP-type peptidyl-prolyl cis-trans isomerase family
protein		 DEI1, PASTICCINO 1 -0.75 0.32 -0.33
3 AT2G23480 transposable element gene 0.69 0.31 -0.3
4 AT3G12950 Trypsin family protein -0.67 0.31 -0.32
5 AT4G33390 Plant protein of unknown function (DUF827) 0.67 0.36 -0.3
6 AT1G22760 poly(A) binding protein 3 poly(A) binding protein 3 0.63 0.28 -0.31
7 AT4G13780 methionine--tRNA ligase, putative / methionyl-tRNA
synthetase, putative / MetRS, putative		 -0.63 0.31 -0.33
8 AT1G29520 AWPM-19-like family protein 0.62 0.31 -0.3
9 AT5G11740 arabinogalactan protein 15 arabinogalactan protein 15,
ATAGP15		 0.62 0.32 -0.32
10 AT5G28210 mRNA capping enzyme family protein 0.62 0.31 -0.32
11 AT1G76710 SET domain group 26 ASH1 RELATED PROTEIN 1,
ASH1-RELATED PROTEIN 1, SET domain
group 26		 -0.62 0.32 -0.32
12 AT3G09735 S1FA-like DNA-binding protein 0.61 0.3 -0.33
13 AT5G04210 CCCH-type zinc fingerfamily protein with RNA-binding domain 0.61 0.33 -0.32
14 AT3G32100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; Has 1 Blast hits to 1 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.34 -0.31
15 AT4G12350 myb domain protein 42 myb domain protein 42, myb domain
protein 42		 -0.6 0.31 -0.3
16 AT4G25610 C2H2-like zinc finger protein 0.6 0.33 -0.29
17 AT4G24890 purple acid phosphatase 24 ARABIDOPSIS THALIANA PURPLE ACID
PHOSPHATASE 24, purple acid
phosphatase 24		 0.6 0.29 -0.3
18 AT5G59050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.59 0.32 -0.32
19 AT5G65160 tetratricopeptide repeat (TPR)-containing protein tetratricopeptide repeat 14 -0.59 0.31 -0.33
20 AT5G17320 homeodomain GLABROUS 9 homeodomain GLABROUS 9 0.59 0.32 -0.29
21 AT5G29000 Homeodomain-like superfamily protein PHR1-like 1 -0.59 0.32 -0.3
22 AT2G13760 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24380.1); Has 68 Blast hits
to 68 proteins in 20 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 4; Plants - 43; Viruses - 0; Other
Eukaryotes - 19 (source: NCBI BLink).		 0.59 0.31 -0.28
23 AT5G57840 HXXXD-type acyl-transferase family protein -0.59 0.31 -0.32
24 AT5G60320 Concanavalin A-like lectin protein kinase family protein 0.58 0.31 -0.32
25 AT5G05700 arginine-tRNA protein transferase 1 ATATE1, arginine-tRNA protein
transferase 1, DELAYED LEAF
SENESCENCE 1		 -0.58 0.3 -0.29
26 AT5G48750 Cytochrome b561/ferric reductase transmembrane with DOMON
related domain		 0.58 0.31 -0.3
27 AT1G06970 cation/hydrogen exchanger 14 ATCHX14, cation/hydrogen exchanger
14		 0.58 0.33 -0.32
28 AT2G28960 Leucine-rich repeat protein kinase family protein 0.58 0.32 -0.31
29 AT1G50530 BEST Arabidopsis thaliana protein match is:
Calcium-dependent lipid-binding (CaLB domain) family
protein (TAIR:AT1G50570.2); Has 10 Blast hits to 10
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.58 0.31 -0.3
30 AT3G21400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; Has 29 Blast hits to 29 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants -
27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.58 0.33 -0.32
31 AT3G13980 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits
to 418 proteins in 98 species: Archae - 0; Bacteria - 6;
Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other
Eukaryotes - 1059 (source: NCBI BLink).		 0.57 0.32 -0.32
32 AT3G42590 transposable element gene 0.57 0.31 -0.33
33 AT1G11040 HSP40/DnaJ peptide-binding protein 0.57 0.31 -0.32
34 AT1G19500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G35765.1); Has 9 Blast hits to 9 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.57 0.34 -0.31
35 AT4G26680 Tetratricopeptide repeat (TPR)-like superfamily protein -0.57 0.32 -0.31
36 AT1G32650 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.57 0.3 -0.3
37 AT5G62070 IQ-domain 23 IQ-domain 23 0.57 0.31 -0.3
38 AT4G39410 WRKY DNA-binding protein 13 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 13, WRKY
DNA-binding protein 13		 0.57 0.31 -0.32
39 AT5G12100 pentatricopeptide (PPR) repeat-containing protein -0.56 0.31 -0.3
40 AT4G32030 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80610.1); Has 63 Blast hits
to 59 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 6; Fungi - 0; Plants - 53; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 0.56 0.31 -0.29
41 AT3G17330 evolutionarily conserved C-terminal region 6 evolutionarily conserved
C-terminal region 6		 0.56 0.31 -0.31
42 AT4G04120 transposable element gene 0.56 0.33 -0.31
43 AT5G23260 K-box region and MADS-box transcription factor family
protein 		ARABIDOPSIS BSISTER, AGAMOUS-like
32, TRANSPARENT TESTA16		 0.56 0.33 -0.31
44 AT2G26490 Transducin/WD40 repeat-like superfamily protein 0.55 0.3 -0.31
45 AT3G52550 BEST Arabidopsis thaliana protein match is: ovate family
protein 18 (TAIR:AT3G52540.1); Has 5496 Blast hits to 1338
proteins in 151 species: Archae - 0; Bacteria - 23; Metazoa
- 3754; Fungi - 379; Plants - 301; Viruses - 154; Other
Eukaryotes - 885 (source: NCBI BLink).		 0.55 0.32 -0.31
46 AT5G03510 C2H2-type zinc finger family protein 0.55 0.32 -0.29
47 AT2G32560 F-box family protein 0.55 0.29 -0.32
48 AT5G46200 Protein of Unknown Function (DUF239) 0.55 0.32 -0.33
49 AT5G11940 Subtilase family protein 0.55 0.3 -0.31
50 AT2G28440 proline-rich family protein -0.55 0.31 -0.29
51 AT4G27110 COBRA-like protein 11 precursor COBRA-like protein 11 precursor 0.55 0.34 -0.31
52 AT3G57210 Protein of unknown function (DUF626) 0.55 0.3 -0.31
53 AT5G59130 Subtilase family protein 0.55 0.32 -0.34
54 AT4G33925 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 suppressor of sni1 2 0.54 0.31 -0.33
55 AT2G47300 ribonuclease Ps 0.54 0.31 -0.31
56 AT5G53840 F-box/RNI-like/FBD-like domains-containing protein 0.53 0.32 -0.33
57 AT3G42900 transposable element gene 0.53 0.32 -0.32
58 AT5G44440 FAD-binding Berberine family protein -0.53 0.31 -0.31
59 AT1G36240 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.53 0.32 -0.32
60 AT1G78440 Arabidopsis thaliana gibberellin 2-oxidase 1 Arabidopsis thaliana gibberellin
2-oxidase 1, gibberellin 2-oxidase
1		 0.53 0.29 -0.29
61 AT1G49840 Protein of unknown function (DUF620) 0.53 0.33 -0.31
62 AT3G47420 phosphate starvation-induced gene 3 Glycerol-3-phosphate permease 1,
phosphate starvation-induced gene
3, Glycerol-3-phosphate permease
1, phosphate starvation-induced
gene 3		 -0.52 0.3 -0.31
63 AT3G18650 AGAMOUS-like 103 AGAMOUS-like 103 -0.52 0.31 -0.31
64 AT2G06500 hAT family dimerisation domain 0.52 0.32 -0.31
65 AT5G11930 Thioredoxin superfamily protein 0.52 0.29 -0.33
66 AT2G16840 transposable element gene 0.51 0.31 -0.31
67 AT5G41310 P-loop nucleoside triphosphate hydrolases superfamily
protein with CH (Calponin Homology) domain		 0.51 0.32 -0.32
68 AT2G07300 transposable element gene 0.51 0.33 -0.32
69 AT1G70870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.51 0.31 -0.3
70 AT1G28220 purine permease 3 purine permease 3, purine permease
3		 0.51 0.31 -0.32
71 AT2G46375 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G61660.1); Has 12 Blast hits
to 12 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.51 0.31 -0.32
72 AT2G43270 F-box and associated interaction domains-containing protein 0.51 0.34 -0.34
73 AT3G19140 RING/U-box superfamily protein DAY NEUTRAL FLOWERING 0.51 0.34 -0.31
74 AT1G01280 cytochrome P450, family 703, subfamily A, polypeptide 2 CYP703, cytochrome P450, family
703, subfamily A, polypeptide 2		 -0.5 0.32 -0.33
75 AT2G30660 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.5 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
76 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) -0.86 0.44 -0.43 C0075
77 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		-0.82 0.43 -0.42 C0091
78 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		-0.81 0.45 -0.47 C0262
79 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		-0.8 0.48 -0.43 C0056
80 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		-0.78 0.45 -0.45 C0261
81 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		-0.77 0.44 -0.43 C0032
82 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		-0.75 0.4 -0.42 C0088
83 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.74 0.46 -0.45 C0073
84 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine -0.74 0.43 -0.45 C0030
85 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) -0.73 0.45 -0.43 C0099
86 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis -0.73 0.48 -0.48
87 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis -0.71 0.42 -0.41 C0234
88 C0006 β-Homothreonine L-β-Homothreonine - - -0.69 0.45 -0.45
89 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		-0.68 0.45 -0.44 C0186
90 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		-0.68 0.33 -0.29 C0140
91 C0026 2-Hydroxyisobutyric acid - - β oxidation -0.67 0.48 -0.43
92 C0069 Citrulline - Citrulline citrulline-nitric oxide cycle,
citrulline biosynthesis,
nitric oxide biosynthesis I (in plants),
urea cycle,
citrulline degradation,
arginine biosynthesis II (acetyl cycle),
arginine biosynthesis I 		-0.67 0.32 -0.33 C0069
93 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		-0.67 0.45 -0.46 C0011
94 C0058 Arginine D,L-Arginine L-Arginine arginine degradation VI (arginase 2 pathway),
arginine degradation I (arginase pathway),
arginine biosynthesis I,
putrescine biosynthesis II,
nitric oxide biosynthesis I (in plants),
citrulline biosynthesis,
putrescine biosynthesis I,
tRNA charging,
arginine biosynthesis II (acetyl cycle),
citrulline-nitric oxide cycle,
urea cycle,
L-Ndelta-acetylornithine biosynthesis 		-0.67 0.31 -0.32 C0058
95 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		-0.65 0.46 -0.46 C0015
96 C0113 Histidinol - Histidinol histidine biosynthesis -0.65 0.33 -0.33 C0113
97 C0094 Galactosamine D-Galactosamine - - -0.64 0.43 -0.46
98 C0028 3-Aminopiperidin-2-one (R,S)-3-Aminopiperidin-2-one - - -0.64 0.32 -0.29
99 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.64 0.48 -0.44 C0053
100 C0066 Choline - Choline choline biosynthesis III,
phosphatidylcholine biosynthesis I,
choline biosynthesis I,
glycine betaine biosynthesis III (plants),
choline biosynthesis II,
sinapate ester biosynthesis,
phospholipases 		-0.63 0.31 -0.29 C0066
101 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		-0.63 0.47 -0.45 C0087
102 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		-0.61 0.32 -0.32 C0052
103 C0112 Histidine L-Histidine L-Histidine tRNA charging,
histidine biosynthesis 		-0.55 0.31 -0.3 C0112
104 C0062 Betain - - - -0.55 0.32 -0.32
105 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway -0.54 0.33 -0.33 C0218