C0054 : Agmatine
Query Information
Cytoscape Web will replace the contents of this div with your graph.
ID C0054
Compound name Agmatine
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=AGMATHINE
Pathway Information putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G27710 60S acidic ribosomal protein family -0.79 0.32 -0.34
2 AT2G19730 Ribosomal L28e protein family -0.78 0.31 -0.35
3 AT2G32060 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein -0.77 0.3 -0.31
4 AT2G21580 Ribosomal protein S25 family protein -0.76 0.32 -0.3
5 AT4G15000 Ribosomal L27e protein family -0.76 0.32 -0.33
6 AT5G27850 Ribosomal protein L18e/L15 superfamily protein -0.75 0.32 -0.33
7 AT4G31985 Ribosomal protein L39 family protein -0.75 0.34 -0.34
8 AT5G42600 marneral synthase marneral synthase 0.75 0.33 -0.31
9 AT3G23390 Zinc-binding ribosomal protein family protein -0.75 0.32 -0.31
10 AT3G56340 Ribosomal protein S26e family protein -0.75 0.3 -0.33
11 AT3G05590 ribosomal protein L18 ribosomal protein L18 -0.75 0.33 -0.34
12 AT2G39390 Ribosomal L29 family protein -0.75 0.32 -0.34
13 AT4G16720 Ribosomal protein L23/L15e family protein -0.74 0.31 -0.33
14 AT1G67430 Ribosomal protein L22p/L17e family protein -0.74 0.29 -0.3
15 AT3G47370 Ribosomal protein S10p/S20e family protein -0.74 0.31 -0.32
16 AT4G27380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.74 0.31 -0.3
17 AT3G09500 Ribosomal L29 family protein -0.74 0.33 -0.28
18 AT2G27530 Ribosomal protein L1p/L10e family PIGGYBACK1 -0.74 0.32 -0.32
19 AT5G10360 Ribosomal protein S6e embryo defective 3010, Ribosomal
protein small subunit 6b		 -0.74 0.29 -0.33
20 AT4G25740 RNA binding Plectin/S10 domain-containing protein -0.74 0.31 -0.3
21 AT3G06700 Ribosomal L29e protein family -0.74 0.32 -0.33
22 AT2G45710 Zinc-binding ribosomal protein family protein -0.73 0.32 -0.32
23 AT5G67510 Translation protein SH3-like family protein -0.73 0.33 -0.32
24 AT4G38100 unknown protein; LOCATED IN: chloroplast thylakoid
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G01150.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.73 0.32 -0.31
25 AT1G26880 Ribosomal protein L34e superfamily protein -0.73 0.31 -0.32
26 AT5G27770 Ribosomal L22e protein family -0.73 0.31 -0.3
27 AT4G29410 Ribosomal L28e protein family -0.73 0.34 -0.31
28 AT4G33865 Ribosomal protein S14p/S29e family protein -0.73 0.34 -0.31
29 AT5G47700 60S acidic ribosomal protein family -0.73 0.34 -0.3
30 AT2G43460 Ribosomal L38e protein family -0.73 0.33 -0.33
31 AT1G18540 Ribosomal protein L6 family protein -0.73 0.33 -0.33
32 AT3G09770 RING/U-box superfamily protein LOSS OF GDU 2 0.73 0.34 -0.3
33 AT5G02470 Transcription factor DP DPA -0.72 0.3 -0.29
34 AT5G57290 60S acidic ribosomal protein family -0.72 0.34 -0.28
35 AT2G25210 Ribosomal protein L39 family protein -0.72 0.33 -0.33
36 AT1G74270 Ribosomal protein L35Ae family protein -0.72 0.32 -0.28
37 AT5G09510 Ribosomal protein S19 family protein -0.72 0.29 -0.3
38 AT3G04400 Ribosomal protein L14p/L23e family protein embryo defective 2171 -0.72 0.29 -0.31
39 AT3G62870 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein -0.72 0.32 -0.33
40 AT5G19510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 -0.72 0.33 -0.3
41 AT1G79650 Rad23 UV excision repair protein family Arabidopsis thaliana aldehyde
oxidase 1, RADIATION SENSITIVE23B		 -0.72 0.31 -0.33
42 AT5G64900 precursor of peptide 1 ARABIDOPSIS THALIANA PEPTIDE 1,
PEPTIDE 1, precursor of peptide 1		 0.71 0.32 -0.33
43 AT1G22920 COP9 signalosome 5A ARABIDOPSIS JAB1 HOMOLOG 1, COP9
signalosome 5A, JAB1		 -0.71 0.31 -0.33
44 AT3G48930 Nucleic acid-binding, OB-fold-like protein embryo defective 1080 -0.71 0.32 -0.31
45 AT1G10550 xyloglucan:xyloglucosyl transferase 33 XYLOGLUCAN:XYLOGLUCOSYL
TRANSFERASE 33,
xyloglucan:xyloglucosyl
transferase 33		 -0.71 0.33 -0.35
46 AT3G61110 ribosomal protein S27 ribosomal protein S27, ribosomal
protein S27		 -0.71 0.33 -0.29
47 AT3G18740 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein receptor-like kinase 902 -0.71 0.34 -0.34
48 AT1G48830 Ribosomal protein S7e family protein -0.71 0.33 -0.32
49 AT3G27620 alternative oxidase 1C alternative oxidase 1C -0.71 0.35 -0.33
50 AT4G26230 Ribosomal protein L31e family protein -0.71 0.3 -0.31
51 AT2G44120 Ribosomal protein L30/L7 family protein -0.7 0.32 -0.33
52 AT3G05560 Ribosomal L22e protein family -0.7 0.34 -0.3
53 AT3G15790 methyl-CPG-binding domain 11 ATMBD11, methyl-CPG-binding domain
11		 0.7 0.32 -0.3
54 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 -0.7 0.3 -0.32
55 AT4G38350 Patched family protein 0.7 0.32 -0.31
56 AT5G23900 Ribosomal protein L13e family protein -0.7 0.3 -0.32
57 AT5G05470 eukaryotic translation initiation factor 2 alpha subunit ATEIF2-A2, eukaryotic translation
initiation factor 2 alpha subunit,
EIF2-A2		 -0.7 0.32 -0.31
58 AT5G03850 Nucleic acid-binding, OB-fold-like protein -0.7 0.31 -0.32
59 AT2G32220 Ribosomal L27e protein family -0.7 0.33 -0.33
60 AT1G13380 Protein of unknown function (DUF1218) -0.7 0.33 -0.31
61 AT3G23710 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-III,
translocon at the inner envelope
membrane of chloroplasts 22-III		 -0.7 0.28 -0.3
62 AT4G12600 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein -0.7 0.33 -0.3
63 AT2G17710 unknown protein; Has 39 Blast hits to 39 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.3 -0.34
64 AT4G18800 RAB GTPase homolog A1D ATHSGBP, ATRAB11B, RAB GTPase
homolog A1D, RAB GTPase homolog
A1D		 -0.69 0.32 -0.33
65 AT1G69620 ribosomal protein L34 ribosomal protein L34 -0.69 0.31 -0.31
66 AT1G04480 Ribosomal protein L14p/L23e family protein -0.69 0.33 -0.33
67 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.3 -0.32
68 AT1G75560 zinc knuckle (CCHC-type) family protein -0.69 0.31 -0.3
69 AT2G25450 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.69 0.33 -0.33
70 AT3G11400 eukaryotic translation initiation factor 3G1 ATEIF3G1, eukaryotic translation
initiation factor 3G1		 -0.69 0.34 -0.34
71 AT3G13920 eukaryotic translation initiation factor 4A1 eukaryotic translation initiation
factor 4A1, RH4, TIF4A1		 -0.69 0.32 -0.33
72 AT4G33250 eukaryotic translation initiation factor 3K ATTIF3K1, eukaryotic translation
initiation factor 3K, TIF3K1		 -0.69 0.32 -0.32
73 AT2G31660 ARM repeat superfamily protein enhanced miRNA activity 1, SUPER
SENSITIVE TO ABA AND DROUGHT2,
UNARMED 9		 -0.69 0.31 -0.31
74 AT2G19540 Transducin family protein / WD-40 repeat family protein -0.69 0.31 -0.33
75 AT1G28260 Telomerase activating protein Est1 0.69 0.35 -0.32
76 AT4G19840 phloem protein 2-A1 phloem protein 2-A1, phloem
protein 2-A1, phloem protein 2-A1		 0.69 0.31 -0.34
77 AT3G07230 wound-responsive protein-related -0.68 0.34 -0.32
78 AT3G53890 Ribosomal protein S21e -0.68 0.32 -0.31
79 AT1G14320 Ribosomal protein L16p/L10e family protein ribosomal protein L10, ribosomal
protein L10 A, SUPPRESSOR OF
ACAULIS 52		 -0.68 0.31 -0.32
80 AT1G14980 chaperonin 10 chaperonin 10 -0.68 0.3 -0.32
81 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 -0.68 0.32 -0.32
82 AT2G44860 Ribosomal protein L24e family protein -0.68 0.3 -0.32
83 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14		 0.68 0.33 -0.31
84 AT5G41520 RNA binding Plectin/S10 domain-containing protein -0.68 0.3 -0.31
85 AT3G09200 Ribosomal protein L10 family protein -0.68 0.32 -0.32
86 AT2G34480 Ribosomal protein L18ae/LX family protein -0.68 0.33 -0.3
87 AT1G31817 Ribosomal L18p/L5e family protein NUCLEAR FUSION DEFECTIVE 3 -0.68 0.31 -0.3
88 AT3G56090 ferritin 3 ferritin 3, ferritin 3 -0.68 0.32 -0.31
89 AT1G07080 Thioredoxin superfamily protein 0.67 0.32 -0.31
90 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 0.67 0.32 -0.3
91 AT4G32160 Phox (PX) domain-containing protein 0.67 0.33 -0.31
92 AT3G07350 Protein of unknown function (DUF506) 0.66 0.34 -0.32
93 AT3G22740 homocysteine S-methyltransferase 3 homocysteine S-methyltransferase 3 0.66 0.32 -0.31
94 AT4G24400 CBL-interacting protein kinase 8 ATCIPK8, CBL-interacting protein
kinase 8, PROTEIN KINASE 11,
SNF1-RELATED PROTEIN KINASE 3.13		 0.66 0.33 -0.31
95 AT1G72140 Major facilitator superfamily protein 0.66 0.34 -0.32
96 AT3G25740 methionine aminopeptidase 1C methionine aminopeptidase 1C,
METHIONINE AMINOPEPTIDASE 1C		 0.65 0.32 -0.35
97 AT2G34840 Coatomer epsilon subunit 0.65 0.32 -0.3
98 AT2G22970 serine carboxypeptidase-like 11 serine carboxypeptidase-like 11 0.65 0.3 -0.32
99 AT1G07120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
envelope; EXPRESSED IN: inflorescence meristem, petal, leaf
whorl, flower; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: Tetratricopeptide repeat
(TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288
Blast hits to 260 proteins in 50 species: Archae - 0;
Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163;
Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).		 0.65 0.32 -0.32
100 AT5G24380 YELLOW STRIPE like 2 YELLOW STRIPE LIKE 2, YELLOW
STRIPE like 2		 0.64 0.31 -0.31
101 AT1G52400 beta glucosidase 18 A. THALIANA BETA-GLUCOSIDASE 1,
BETA-GLUCOSIDASE HOMOLOG 1, beta
glucosidase 18		 0.64 0.3 -0.33
102 AT1G23330 alpha/beta-Hydrolases superfamily protein 0.64 0.31 -0.33
103 AT5G49130 MATE efflux family protein 0.63 0.3 -0.31
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
104 C0054 Agmatine - Agmatine putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis 		1 0.32 -0.34 C0054
105 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		0.82 0.31 -0.34 C0260
106 C0217 Putative glucosinole - - - -0.82 0.48 -0.43
107 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.82 0.43 -0.44 C0056
108 C0014 O-Acetylserine O-Acetyl-L-serine O-Acetyl-L-serine cysteine biosynthesis I,
seleno-amino acid biosynthesis 		0.81 0.32 -0.31 C0014
109 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.81 0.43 -0.46 C0032
110 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		0.8 0.3 -0.32 C0257
111 C0026 2-Hydroxyisobutyric acid - - β oxidation 0.79 0.44 -0.46
112 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		0.76 0.43 -0.44 C0011
113 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.75 0.41 -0.45 C0091
114 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		0.75 0.45 -0.44 C0057
115 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		0.73 0.34 -0.3 C0137
116 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.73 0.42 -0.44 C0075
117 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		0.71 0.32 -0.32 C0052
118 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		0.71 0.31 -0.31 C0140
119 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		0.7 0.44 -0.47 C0109
120 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.7 0.46 -0.44 C0099
121 C0243 Succinic acid - Succinate flavonol biosynthesis,
glyoxylate cycle,
gibberellin biosynthesis III (early C-13 hydroxylation),
TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
aerobic respiration (alternative oxidase pathway),
gibberellin inactivation I (2beta-hydroxylation),
4-aminobutyrate degradation IV,
luteolin biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
leucodelphinidin biosynthesis,
glutamate degradation IV,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
succinate + a ubiquinone -> a ubiquinol + fumarate,
gibberellin biosynthesis II (early C-3 hydroxylation),
flavonoid biosynthesis,
superpathway of glyoxylate cycle and fatty acid degradation,
aerobic respiration (cytochrome c),
leucopelargonidin and leucocyanidin biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
scopoletin biosynthesis 		0.7 0.32 -0.3 C0243
122 C0216 Proline L-Proline L-Proline proline degradation II,
arginine degradation VI (arginase 2 pathway),
L-Ndelta-acetylornithine biosynthesis,
tRNA charging,
citrulline biosynthesis,
proline biosynthesis III 		0.68 0.31 -0.31 C0216
123 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		0.67 0.31 -0.32 C0022
124 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.67 0.41 -0.44 C0053
125 C0062 Betain - - - 0.66 0.32 -0.33
126 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		0.66 0.47 -0.45 C0073
127 C0210 Phytol E-Phytol Phytol chlorophyll a degradation II,
chlorophyll a degradation,
phytol salvage pathway 		0.66 0.43 -0.47 C0210
128 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration 		0.64 0.44 -0.45 C0107
129 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway 0.64 0.33 -0.33 C0218
130 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II 0.63 0.32 -0.32 C0097