C0066 : Choline
Query Information
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ID C0066
Compound name Choline
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=CHOLINE
Pathway Information choline biosynthesis III,
phosphatidylcholine biosynthesis I,
choline biosynthesis I,
glycine betaine biosynthesis III (plants),
choline biosynthesis II,
sinapate ester biosynthesis,
phospholipases
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G48750 Cytochrome b561/ferric reductase transmembrane with DOMON
related domain		 -0.68 0.34 -0.32
2 AT4G34840 Phosphorylase superfamily protein ARABIDOPSIS METHYLTHIOADENOSINE
NUCLEOSIDASE 2, ARABIDOPSIS
METHYLTHIOADENOSINE NUCLEOSIDASE
2, METHYLTHIOADENOSINE
NUCLEOSIDASE 2,
methylthioadenosine nucleosidase 2		 -0.67 0.31 -0.32
3 AT2G17710 unknown protein; Has 39 Blast hits to 39 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.31 -0.31
4 AT3G47000 Glycosyl hydrolase family protein 0.64 0.3 -0.33
5 AT5G49440 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.64 0.31 -0.32
6 AT4G21650 Subtilase family protein 0.63 0.33 -0.32
7 AT1G71770 poly(A)-binding protein 5 poly(A)-binding protein 5 -0.63 0.3 -0.32
8 AT1G74160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits
to 2217 proteins in 314 species: Archae - 0; Bacteria -
264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses -
34; Other Eukaryotes - 1149 (source: NCBI BLink).		 0.63 0.3 -0.33
9 AT2G16690 transposable element gene 0.63 0.31 -0.31
10 AT5G30440 transposable element gene 0.62 0.32 -0.32
11 AT4G18870 E2F/DP family winged-helix DNA-binding domain 0.61 0.32 -0.31
12 AT1G77440 20S proteasome beta subunit C2 20S proteasome beta subunit C2 -0.61 0.32 -0.33
13 AT2G25420 transducin family protein / WD-40 repeat family protein 0.61 0.35 -0.31
14 AT5G40430 myb domain protein 22 myb domain protein 22, myb domain
protein 22		 -0.61 0.3 -0.3
15 AT4G21800 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 quatre-quart2 -0.6 0.31 -0.34
16 AT4G38530 phospholipase C1 phospholipase C1, phospholipase C1 0.6 0.32 -0.34
17 AT3G15060 RAB GTPase homolog A1G RAB GTPase homolog A1G, RAB GTPase
homolog A1G		 -0.6 0.31 -0.3
18 AT3G26730 RING/U-box superfamily protein 0.59 0.32 -0.31
19 AT2G41420 proline-rich family protein WINDHOSE 2 -0.59 0.34 -0.32
20 AT3G54010 FKBP-type peptidyl-prolyl cis-trans isomerase family
protein		 DEI1, PASTICCINO 1 0.59 0.32 -0.31
21 AT1G23820 spermidine synthase 1 spermidine synthase 1 -0.59 0.32 -0.31
22 AT5G08130 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 BIM1 0.58 0.31 -0.32
23 AT1G06970 cation/hydrogen exchanger 14 ATCHX14, cation/hydrogen exchanger
14		 -0.58 0.32 -0.32
24 AT1G24040 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.58 0.32 -0.33
25 AT2G04660 anaphase-promoting complex/cyclosome 2 anaphase-promoting
complex/cyclosome 2		 0.58 0.33 -0.31
26 AT5G56160 Sec14p-like phosphatidylinositol transfer family protein 0.57 0.3 -0.33
27 AT5G05700 arginine-tRNA protein transferase 1 ATATE1, arginine-tRNA protein
transferase 1, DELAYED LEAF
SENESCENCE 1		 0.57 0.33 -0.32
28 AT4G31940 cytochrome P450, family 82, subfamily C, polypeptide 4 cytochrome P450, family 82,
subfamily C, polypeptide 4		 0.57 0.31 -0.32
29 AT1G60995 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s:
Membralin (InterPro:IPR019144); Has 172 Blast hits to 170
proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa -
110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes
- 24 (source: NCBI BLink).		 -0.57 0.31 -0.31
30 AT1G49400 Nucleic acid-binding, OB-fold-like protein embryo defective 1129 -0.57 0.34 -0.32
31 AT3G42900 transposable element gene -0.57 0.31 -0.32
32 AT3G25160 ER lumen protein retaining receptor family protein 0.57 0.32 -0.32
33 AT5G44260 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.57 0.34 -0.32
34 AT5G52975 Protein of unknown function (DUF1278) 0.57 0.32 -0.31
35 AT4G11020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G23870.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.57 0.32 -0.29
36 AT4G35050 Transducin family protein / WD-40 repeat family protein MULTICOPY SUPPRESSOR OF IRA1 3,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 3		 -0.56 0.31 -0.33
37 AT4G22800 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.56 0.31 -0.33
38 AT1G23220 Dynein light chain type 1 family protein -0.56 0.33 -0.31
39 AT2G32740 galactosyltransferase 13 ARABIDOPSIS GALACTOSYLTRANSFERASE
13, galactosyltransferase 13		 -0.56 0.32 -0.31
40 AT1G69490 NAC-like, activated by AP3/PI Arabidopsis NAC domain containing
protein 29, NAC-LIKE, ACTIVATED BY
AP3/PI, NAC-like, activated by
AP3/PI		 0.56 0.31 -0.31
41 AT4G16000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G15990.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.55 0.33 -0.31
42 AT2G18260 syntaxin of plants 112 ATSYP112, syntaxin of plants 112 0.55 0.32 -0.33
43 AT4G32270 Ubiquitin-like superfamily protein 0.55 0.34 -0.31
44 AT4G25610 C2H2-like zinc finger protein -0.55 0.3 -0.29
45 AT5G19200 NAD(P)-binding Rossmann-fold superfamily protein TSC10B 0.55 0.3 -0.31
46 AT5G10880 tRNA synthetase-related / tRNA ligase-related 0.55 0.3 -0.33
47 AT2G04070 MATE efflux family protein -0.55 0.31 -0.31
48 AT5G02210 GCK domain-containing protein 0.54 0.32 -0.33
49 AT3G19780 LOCATED IN: endomembrane system; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF179
(InterPro:IPR003774), Thioredoxin fold
(InterPro:IPR012335), Thioredoxin-like fold
(InterPro:IPR012336); BEST Arabidopsis thaliana protein
match is: Protein of unknown function (DUF179)
(TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32
species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi -
3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.54 0.32 -0.32
50 AT1G06710 Tetratricopeptide repeat (TPR)-like superfamily protein -0.54 0.31 -0.32
51 AT2G07300 transposable element gene -0.54 0.34 -0.3
52 AT5G40260 Nodulin MtN3 family protein AtSWEET8, SWEET8 0.54 0.32 -0.3
53 AT3G61090 Putative endonuclease or glycosyl hydrolase -0.54 0.28 -0.33
54 AT2G29580 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5B 0.54 0.32 -0.31
55 AT1G44318 Aldolase superfamily protein hemb2 0.53 0.31 -0.34
56 ATMG00890 hypothetical protein ORF106D 0.53 0.31 -0.34
57 AT4G07480 transposable element gene -0.53 0.31 -0.32
58 AT3G25600 Calcium-binding EF-hand family protein -0.53 0.31 -0.31
59 AT4G05370 BCS1 AAA-type ATPase -0.53 0.31 -0.35
60 AT3G48700 carboxyesterase 13 carboxyesterase 13,
carboxyesterase 13		 -0.53 0.33 -0.32
61 AT1G11630 Tetratricopeptide repeat (TPR)-like superfamily protein 0.53 0.31 -0.31
62 AT4G08670 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.53 0.32 -0.33
63 AT1G70000 myb-like transcription factor family protein -0.52 0.32 -0.3
64 AT1G35210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF740 (InterPro:IPR008004);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G22470.1); Has 83 Blast hits to 83 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.52 0.31 -0.35
65 AT4G38940 Galactose oxidase/kelch repeat superfamily protein -0.52 0.3 -0.3
66 AT1G68230 Reticulon family protein -0.52 0.32 -0.3
67 AT5G03510 C2H2-type zinc finger family protein -0.5 0.32 -0.32
68 AT3G57210 Protein of unknown function (DUF626) -0.5 0.31 -0.33
69 AT4G26150 cytokinin-responsive gata factor 1 cytokinin-responsive gata factor
1, GATA TRANSCRIPTION FACTOR 22,
GNC-LIKE		 -0.5 0.33 -0.32
70 AT5G37490 ARM repeat superfamily protein -0.5 0.31 -0.29
71 AT1G44510 transposable element gene -0.49 0.29 -0.32
72 AT1G48800 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.49 0.31 -0.33
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
73 C0066 Choline - Choline choline biosynthesis III,
phosphatidylcholine biosynthesis I,
choline biosynthesis I,
glycine betaine biosynthesis III (plants),
choline biosynthesis II,
sinapate ester biosynthesis,
phospholipases 		1 0.31 -0.3 C0066
74 C0006 β-Homothreonine L-β-Homothreonine - - 0.91 0.45 -0.45
75 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.88 0.47 -0.46 C0261
76 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.87 0.45 -0.46 C0262
77 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.87 0.44 -0.46 C0056
78 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.86 0.44 -0.43 C0088
79 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway 0.84 0.32 -0.31 C0218
80 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.83 0.44 -0.45 C0234
81 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.81 0.43 -0.43 C0030
82 C0061 Aspartic acid L-Aspartic acid L-Aspartate purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging,
indole-3-acetyl-amino acid biosynthesis,
citrulline-nitric oxide cycle,
asparagine degradation I,
cyanide detoxification II,
asparagine biosynthesis I,
asparagine biosynthesis III (tRNA-dependent),
arginine biosynthesis I,
inosine-5'-phosphate biosynthesis II,
uridine-5'-phosphate biosynthesis,
aspartate biosynthesis,
homoserine biosynthesis,
lysine biosynthesis VI,
aspartate degradation II,
urea cycle,
purine nucleotides de novo biosynthesis II,
NAD biosynthesis I (from aspartate),
IAA degradation IV,
arginine biosynthesis II (acetyl cycle) 		0.81 0.32 -0.33 C0061
83 C0094 Galactosamine D-Galactosamine - - 0.8 0.44 -0.45
84 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.79 0.45 -0.44 C0087
85 C0113 Histidinol - Histidinol histidine biosynthesis 0.79 0.34 -0.33 C0113
86 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		0.78 0.43 -0.46 C0015
87 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.78 0.44 -0.42 C0075
88 C0259 Tyramine - Tyramine hydroxycinnamic acid tyramine amides biosynthesis,
suberin biosynthesis 		0.77 0.31 -0.33 C0259
89 C0058 Arginine D,L-Arginine L-Arginine arginine degradation VI (arginase 2 pathway),
arginine degradation I (arginase pathway),
arginine biosynthesis I,
putrescine biosynthesis II,
nitric oxide biosynthesis I (in plants),
citrulline biosynthesis,
putrescine biosynthesis I,
tRNA charging,
arginine biosynthesis II (acetyl cycle),
citrulline-nitric oxide cycle,
urea cycle,
L-Ndelta-acetylornithine biosynthesis 		0.77 0.31 -0.32 C0058
90 C0062 Betain - - - 0.77 0.32 -0.32
91 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.77 0.45 -0.48 C0099
92 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.77 0.45 -0.44
93 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		0.76 0.41 -0.43 C0073
94 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		0.75 0.44 -0.44 C0186
95 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.74 0.4 -0.47 C0091
96 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.74 0.44 -0.42 C0032
97 C0159 MST_1505.6 - - - 0.73 0.45 -0.48
98 C0069 Citrulline - Citrulline citrulline-nitric oxide cycle,
citrulline biosynthesis,
nitric oxide biosynthesis I (in plants),
urea cycle,
citrulline degradation,
arginine biosynthesis II (acetyl cycle),
arginine biosynthesis I 		0.72 0.31 -0.32 C0069
99 C0162 MST_1588.3 - - - 0.72 0.46 -0.44
100 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		0.72 0.32 -0.31 C0052
101 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		0.72 0.3 -0.33 C0140
102 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		0.71 0.43 -0.43 C0011
103 C0026 2-Hydroxyisobutyric acid - - β oxidation 0.68 0.43 -0.45
104 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		0.68 0.45 -0.43 C0027
105 C0112 Histidine L-Histidine L-Histidine tRNA charging,
histidine biosynthesis 		0.67 0.32 -0.33 C0112
106 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		0.66 0.31 -0.31 C0137
107 C0175 MST_2379.9 - - - 0.65 0.45 -0.46
108 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		0.65 0.3 -0.31 C0005
109 C0216 Proline L-Proline L-Proline proline degradation II,
arginine degradation VI (arginase 2 pathway),
L-Ndelta-acetylornithine biosynthesis,
tRNA charging,
citrulline biosynthesis,
proline biosynthesis III 		0.65 0.32 -0.3 C0216
110 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		0.62 0.34 -0.32 C0022
111 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		0.61 0.32 -0.33 C0260
112 C0013 N2-Acetyl-Ornithine N2-Acetyl-L-ornithine N-acetyl-L-ornithine arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		0.57 0.33 -0.32 C0013