C0137 : Leucine
Query Information
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ID C0137
Compound name Leucine
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=LEU
Pathway Information indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G69620 ribosomal protein L34 ribosomal protein L34 -0.78 0.33 -0.32
2 AT5G06740 Concanavalin A-like lectin protein kinase family protein -0.77 0.33 -0.32
3 AT2G21195 unknown protein; Has 28 Blast hits to 28 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.75 0.33 -0.32
4 AT4G31985 Ribosomal protein L39 family protein -0.74 0.33 -0.31
5 AT5G57290 60S acidic ribosomal protein family -0.74 0.31 -0.34
6 AT1G14980 chaperonin 10 chaperonin 10 -0.74 0.32 -0.31
7 AT4G09320 Nucleoside diphosphate kinase family protein NDPK1 -0.73 0.33 -0.34
8 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 -0.73 0.33 -0.3
9 AT5G26360 TCP-1/cpn60 chaperonin family protein -0.73 0.3 -0.32
10 AT4G36880 cysteine proteinase1 cysteine proteinase1 -0.73 0.31 -0.32
11 AT3G05320 O-fucosyltransferase family protein -0.73 0.29 -0.29
12 AT5G43970 translocase of outer membrane 22-V ATTOM22-V, translocase of outer
membrane 22-V, TRANSLOCASE OUTER
MITOCHONDRIAL MEMBRANE 22-V		 -0.73 0.3 -0.31
13 AT5G27770 Ribosomal L22e protein family -0.72 0.33 -0.33
14 AT2G43460 Ribosomal L38e protein family -0.72 0.33 -0.3
15 AT1G54770 Fcf2 pre-rRNA processing protein -0.71 0.33 -0.3
16 AT5G23900 Ribosomal protein L13e family protein -0.71 0.32 -0.32
17 AT2G40010 Ribosomal protein L10 family protein -0.71 0.3 -0.29
18 AT2G21290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.71 0.32 -0.35
19 AT5G16150 plastidic GLC translocator GLUCOSE TRANSPORTER 1, plastidic
GLC translocator		 0.71 0.3 -0.33
20 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein 0.71 0.32 -0.31
21 AT1G26740 Ribosomal L32p protein family -0.71 0.3 -0.31
22 AT4G29430 ribosomal protein S15A E ribosomal protein S15A E -0.7 0.33 -0.32
23 AT5G39910 Pectin lyase-like superfamily protein 0.7 0.33 -0.32
24 AT2G25450 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.7 0.32 -0.31
25 AT1G64090 Reticulan like protein B3 Reticulan like protein B3 -0.7 0.33 -0.33
26 AT4G00170 Plant VAMP (vesicle-associated membrane protein) family
protein		 -0.7 0.32 -0.34
27 AT5G14040 phosphate transporter 3;1 phosphate transporter 3;1 -0.7 0.3 -0.33
28 AT1G28260 Telomerase activating protein Est1 0.7 0.31 -0.31
29 AT3G53890 Ribosomal protein S21e -0.69 0.32 -0.31
30 AT2G34840 Coatomer epsilon subunit 0.69 0.32 -0.32
31 AT1G75560 zinc knuckle (CCHC-type) family protein -0.69 0.32 -0.33
32 AT3G09500 Ribosomal L29 family protein -0.69 0.31 -0.29
33 AT3G07910 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Reactive oxygen species modulator 1 (InterPro:IPR018450);
Has 192 Blast hits to 192 proteins in 80 species: Archae -
0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		 -0.68 0.28 -0.33
34 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 0.68 0.32 -0.32
35 AT5G49990 Xanthine/uracil permease family protein 0.68 0.32 -0.34
36 AT3G02190 Ribosomal protein L39 family protein -0.68 0.32 -0.32
37 AT4G33865 Ribosomal protein S14p/S29e family protein -0.68 0.3 -0.33
38 AT2G42310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits
to 115 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.3 -0.31
39 AT2G45710 Zinc-binding ribosomal protein family protein -0.67 0.31 -0.32
40 AT1G55460 DNA/RNA-binding protein Kin17, conserved region 0.67 0.32 -0.3
41 AT5G41010 DNA directed RNA polymerase, 7 kDa subunit NRPB12, NRPD12, NRPE12 -0.67 0.34 -0.32
42 AT4G39200 Ribosomal protein S25 family protein -0.67 0.31 -0.32
43 AT2G20770 GCR2-like 2 GCR2-like 2 0.67 0.33 -0.35
44 AT5G06210 RNA binding (RRM/RBD/RNP motifs) family protein -0.67 0.31 -0.33
45 AT1G31817 Ribosomal L18p/L5e family protein NUCLEAR FUSION DEFECTIVE 3 -0.67 0.32 -0.32
46 AT3G07230 wound-responsive protein-related -0.66 0.32 -0.3
47 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 -0.66 0.31 -0.3
48 AT3G26730 RING/U-box superfamily protein 0.66 0.32 -0.29
49 AT4G38100 unknown protein; LOCATED IN: chloroplast thylakoid
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G01150.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.66 0.33 -0.29
50 AT1G29090 Cysteine proteinases superfamily protein -0.66 0.31 -0.31
51 AT5G09930 ABC transporter family protein ATP-binding cassette F2 0.65 0.33 -0.31
52 AT2G20940 Protein of unknown function (DUF1279) -0.65 0.32 -0.33
53 AT2G44860 Ribosomal protein L24e family protein -0.65 0.29 -0.3
54 AT1G26470 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
regulation of transcription; LOCATED IN: nucleus, H4/H2A
histone acetyltransferase complex; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast
hits to 60 proteins in 27 species: Archae - 0; Bacteria -
0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.65 0.33 -0.32
55 AT2G45790 phosphomannomutase PHOSPHOMANNOMUTASE,
phosphomannomutase		 -0.65 0.31 -0.31
56 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 -0.65 0.31 -0.32
57 AT5G19760 Mitochondrial substrate carrier family protein -0.65 0.33 -0.3
58 AT2G29580 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5B 0.65 0.31 -0.32
59 AT4G29480 Mitochondrial ATP synthase subunit G protein -0.64 0.33 -0.31
60 AT2G40420 Transmembrane amino acid transporter family protein 0.64 0.3 -0.33
61 AT1G65390 phloem protein 2 A5 phloem protein 2 A5, phloem
protein 2 A5		 -0.64 0.31 -0.31
62 AT5G60870 Regulator of chromosome condensation (RCC1) family protein RCC1/UVR8/GEF-like 3 -0.64 0.33 -0.34
63 AT1G15250 Zinc-binding ribosomal protein family protein -0.64 0.31 -0.31
64 AT5G06360 Ribosomal protein S8e family protein -0.64 0.33 -0.3
65 AT2G39500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; Has 16 Blast hits to 16
proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.64 0.33 -0.31
66 AT3G16100 RAB GTPase homolog G3C ATRAB7D, RAB GTPase homolog G3C,
RAB GTPase homolog G3C		 -0.64 0.32 -0.31
67 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 -0.64 0.3 -0.32
68 AT4G08670 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.64 0.33 -0.33
69 AT5G53560 cytochrome B5 isoform E ATB5-A, ARABIDOPSIS CYTOCHROME B5
ISOFORM E, B5 #2, cytochrome B5
isoform E		 -0.64 0.3 -0.31
70 AT4G32520 serine hydroxymethyltransferase 3 SERINE HYDROXYMETHYLTRANSFERASE 3,
serine hydroxymethyltransferase 3		 -0.63 0.32 -0.3
71 AT4G24840 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein transport, Golgi organization; LOCATED IN: vacuole;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: COG complex
component, COG2 (InterPro:IPR009316); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.63 0.33 -0.32
72 AT1G16000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits
to 40 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.32 -0.33
73 AT1G27435 unknown protein; Has 16 Blast hits to 16 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.33 -0.3
74 AT3G22480 prefoldin 2 prefoldin 2 -0.63 0.31 -0.3
75 AT5G05990 Mitochondrial glycoprotein family protein -0.63 0.31 -0.33
76 AT3G05000 Transport protein particle (TRAPP) component -0.63 0.31 -0.33
77 AT2G17710 unknown protein; Has 39 Blast hits to 39 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.33 -0.31
78 AT1G65390 phloem protein 2 A5 phloem protein 2 A5, phloem
protein 2 A5		 -0.62 0.33 -0.32
79 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 -0.62 0.32 -0.3
80 AT5G11760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1764, eukaryotic (InterPro:IPR013885);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.62 0.32 -0.34
81 AT1G03150 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.62 0.35 -0.33
82 AT4G14420 HR-like lesion-inducing protein-related -0.62 0.32 -0.32
83 AT5G37660 plasmodesmata-located protein 7 plasmodesmata-located protein 7 -0.62 0.32 -0.29
84 AT5G63200 tetratricopeptide repeat (TPR)-containing protein 0.62 0.31 -0.3
85 AT2G46180 golgin candidate 4 golgin candidate 4 0.62 0.31 -0.31
86 AT1G24735 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.62 0.33 -0.31
87 AT4G13810 receptor like protein 47 receptor like protein 47, receptor
like protein 47		 0.62 0.32 -0.33
88 AT1G54230 Winged helix-turn-helix transcription repressor DNA-binding 0.62 0.31 -0.32
89 AT1G12830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 39778
Blast hits to 22088 proteins in 1060 species: Archae - 152;
Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants -
2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI
BLink).		 -0.62 0.31 -0.33
90 AT4G37660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 -0.62 0.31 -0.31
91 AT5G43840 heat shock transcription factor A6A heat shock transcription factor
A6A, heat shock transcription
factor A6A		 0.61 0.34 -0.32
92 AT3G22490 Seed maturation protein 0.61 0.3 -0.3
93 AT5G44310 Late embryogenesis abundant protein (LEA) family protein 0.61 0.32 -0.32
94 AT2G22660 Protein of unknown function (duplicated DUF1399) 0.61 0.31 -0.29
95 AT4G21650 Subtilase family protein 0.6 0.3 -0.32
96 AT1G73570 HCP-like superfamily protein 0.6 0.33 -0.34
97 AT5G58160 actin binding 0.6 0.32 -0.31
98 AT5G18870 Inosine-uridine preferring nucleoside hydrolase family
protein		 nucleoside hydrolase 5 0.59 0.32 -0.31
99 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 0.59 0.31 -0.29
100 AT1G71980 Protease-associated (PA) RING/U-box zinc finger family
protein		 0.59 0.31 -0.29
101 AT3G25160 ER lumen protein retaining receptor family protein 0.59 0.3 -0.34
102 AT2G35050 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 0.59 0.31 -0.3
103 AT3G08020 PHD finger family protein 0.59 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
104 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		1 0.33 -0.31 C0137
105 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		0.91 0.43 -0.43 C0057
106 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.89 0.45 -0.45 C0056
107 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.83 0.46 -0.47 C0099
108 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.83 0.47 -0.42 C0032
109 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.8 0.43 -0.44 C0234
110 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		0.78 0.3 -0.32 C0260
111 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		0.76 0.3 -0.34 C0140
112 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		0.75 0.32 -0.32 C0052
113 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.75 0.46 -0.46 C0030
114 C0054 Agmatine - Agmatine putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis 		0.73 0.32 -0.32 C0054
115 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.72 0.45 -0.42 C0262
116 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		0.72 0.3 -0.32 C0022
117 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II 0.72 0.31 -0.32 C0097
118 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		0.72 0.32 -0.31 C0257
119 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.72 0.46 -0.42 C0261
120 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		0.71 0.34 -0.32 C0005
121 C0207 Phosphatidylglycerol-34:5 - - - 0.71 0.43 -0.45
122 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		0.7 0.45 -0.43 C0109
123 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.69 0.46 -0.45 C0091
124 C0006 β-Homothreonine L-β-Homothreonine - - 0.68 0.46 -0.42
125 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		0.68 0.46 -0.45 C0015
126 C0094 Galactosamine D-Galactosamine - - 0.68 0.42 -0.44
127 C0259 Tyramine - Tyramine hydroxycinnamic acid tyramine amides biosynthesis,
suberin biosynthesis 		0.67 0.34 -0.32 C0259
128 C0216 Proline L-Proline L-Proline proline degradation II,
arginine degradation VI (arginase 2 pathway),
L-Ndelta-acetylornithine biosynthesis,
tRNA charging,
citrulline biosynthesis,
proline biosynthesis III 		0.67 0.31 -0.31 C0216
129 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.67 0.44 -0.44 C0075
130 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.67 0.45 -0.43 C0053
131 C0066 Choline - Choline choline biosynthesis III,
phosphatidylcholine biosynthesis I,
choline biosynthesis I,
glycine betaine biosynthesis III (plants),
choline biosynthesis II,
sinapate ester biosynthesis,
phospholipases 		0.66 0.3 -0.33 C0066
132 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.66 0.45 -0.44 C0087
133 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway 0.66 0.33 -0.3 C0218
134 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		0.66 0.45 -0.45 C0073
135 C0062 Betain - - - 0.63 0.29 -0.32