C0142 : Malonic acid
Query Information
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ID C0142
Compound name Malonic acid
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=MALONATE
Pathway Information fatty acid biosynthesis (plant mitochondria)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.74 0.33 -0.31
2 AT2G32220 Ribosomal L27e protein family -0.72 0.31 -0.31
3 AT3G04230 Ribosomal protein S5 domain 2-like superfamily protein -0.71 0.32 -0.31
4 AT1G36060 Integrase-type DNA-binding superfamily protein -0.71 0.31 -0.34
5 AT2G04520 Nucleic acid-binding, OB-fold-like protein -0.71 0.31 -0.34
6 AT5G64120 Peroxidase superfamily protein -0.7 0.31 -0.31
7 AT1G71400 receptor like protein 12 receptor like protein 12, receptor
like protein 12		 -0.7 0.35 -0.31
8 AT1G68540 NAD(P)-binding Rossmann-fold superfamily protein cinnamoyl coA reductase-like 6,
tetraketide alpha-pyrone reductase
2		 0.7 0.32 -0.31
9 AT5G14510 ARM repeat superfamily protein 0.7 0.34 -0.33
10 AT3G25940 TFIIB zinc-binding protein -0.69 0.32 -0.31
11 AT2G37130 Peroxidase superfamily protein -0.69 0.32 -0.31
12 AT2G44860 Ribosomal protein L24e family protein -0.69 0.3 -0.32
13 AT4G12470 azelaic acid induced 1 azelaic acid induced 1 -0.68 0.34 -0.31
14 AT1G05300 zinc transporter 5 precursor zinc transporter 5 precursor -0.67 0.34 -0.31
15 AT1G10000 Ribonuclease H-like superfamily protein 0.67 0.32 -0.32
16 AT1G67620 Lojap-related protein -0.67 0.33 -0.3
17 AT2G19540 Transducin family protein / WD-40 repeat family protein -0.67 0.32 -0.31
18 AT3G11710 lysyl-tRNA synthetase 1 lysyl-tRNA synthetase 1 -0.66 0.33 -0.31
19 AT3G15640 Rubredoxin-like superfamily protein -0.66 0.3 -0.32
20 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 0.66 0.31 -0.32
21 AT3G28200 Peroxidase superfamily protein -0.66 0.33 -0.31
22 AT4G02230 Ribosomal protein L19e family protein -0.66 0.33 -0.29
23 AT1G60650 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 AtRZ-1b, RZ-1b -0.66 0.3 -0.33
24 AT2G01970 Endomembrane protein 70 protein family -0.66 0.31 -0.33
25 AT4G13850 glycine-rich RNA-binding protein 2 GLYCINE-RICH RNA-BINDING PROTEIN
2, glycine-rich RNA-binding
protein 2, glycine rich protein 2		 -0.66 0.33 -0.32
26 AT5G14105 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.66 0.31 -0.32
27 AT3G11220 Paxneb protein-related ELONGATA 1 -0.65 0.34 -0.3
28 AT2G36690 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.3 -0.3
29 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 -0.65 0.31 -0.33
30 AT5G14030 translocon-associated protein beta (TRAPB) family protein -0.65 0.32 -0.31
31 AT3G59220 pirin ATPIRIN1, pirin, PRN1 -0.64 0.33 -0.29
32 AT1G62790 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.64 0.34 -0.32
33 AT1G60770 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.31 -0.31
34 AT1G05030 Major facilitator superfamily protein 0.64 0.33 -0.32
35 AT3G22300 ribosomal protein S10 ribosomal protein S10 -0.64 0.32 -0.34
36 AT5G07890 myosin heavy chain-related 0.64 0.32 -0.34
37 AT3G04580 Signal transduction histidine kinase, hybrid-type, ethylene
sensor		 ETHYLENE INSENSITIVE 4 -0.64 0.33 -0.31
38 AT5G39580 Peroxidase superfamily protein -0.63 0.31 -0.31
39 AT1G52930 Ribosomal RNA processing Brix domain protein -0.63 0.31 -0.31
40 AT5G13850 nascent polypeptide-associated complex subunit alpha-like
protein 3		 nascent polypeptide-associated
complex subunit alpha-like protein
3		 -0.63 0.3 -0.3
41 AT3G17609 HY5-homolog HY5-homolog -0.63 0.31 -0.33
42 AT4G12480 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 EARLY ARABIDOPSIS ALUMINUM INDUCED
1, pEARLI 1		 -0.63 0.32 -0.34
43 AT5G44910 Toll-Interleukin-Resistance (TIR) domain family protein -0.63 0.31 -0.33
44 AT3G62940 Cysteine proteinases superfamily protein -0.63 0.31 -0.31
45 AT5G48560 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.63 0.32 -0.35
46 AT3G48570 secE/sec61-gamma protein transport protein -0.62 0.33 -0.3
47 AT1G27390 translocase outer membrane 20-2 translocase outer membrane 20-2 -0.62 0.33 -0.3
48 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein -0.62 0.3 -0.33
49 AT5G02050 Mitochondrial glycoprotein family protein -0.62 0.32 -0.32
50 AT4G38710 glycine-rich protein -0.62 0.31 -0.33
51 AT2G42280 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.62 0.32 -0.34
52 AT1G04070 translocase of outer membrane 22-I ATTOM22-I, translocase of outer
membrane 22-I		 -0.62 0.31 -0.31
53 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 0.62 0.29 -0.31
54 AT1G56710 Pectin lyase-like superfamily protein 0.61 0.3 -0.34
55 AT4G29390 Ribosomal protein S30 family protein -0.61 0.33 -0.31
56 AT2G33845 Nucleic acid-binding, OB-fold-like protein -0.61 0.31 -0.29
57 AT5G53400 HSP20-like chaperones superfamily protein BOBBER1 -0.61 0.32 -0.32
58 AT3G49910 Translation protein SH3-like family protein -0.61 0.31 -0.33
59 AT1G55810 uridine kinase-like 3 uridine kinase-like 3 -0.61 0.32 -0.32
60 AT3G22320 Eukaryotic rpb5 RNA polymerase subunit family protein ATRPABC24.3, NRPB5, NRPD5, RNA
POLYMERASE II FIFTH LARGEST
SUBUNIT, A		 -0.61 0.32 -0.3
61 AT5G03270 lysine decarboxylase family protein LONELY GUY 6 0.61 0.3 -0.31
62 AT3G01820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.6 0.31 -0.34
63 AT5G56160 Sec14p-like phosphatidylinositol transfer family protein 0.6 0.32 -0.3
64 AT2G29970 Double Clp-N motif-containing P-loop nucleoside
triphosphate hydrolases superfamily protein		 0.6 0.32 -0.34
65 AT5G62040 PEBP (phosphatidylethanolamine-binding protein) family
protein		 brother of FT and TFL1 0.6 0.31 -0.32
66 AT4G36590 MADS-box transcription factor family protein 0.6 0.35 -0.31
67 AT2G39500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; Has 16 Blast hits to 16
proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.3 -0.3
68 AT1G16440 root hair specific 3 root hair specific 3 -0.6 0.33 -0.29
69 AT4G24270 EMBRYO DEFECTIVE 140 EMBRYO DEFECTIVE 140 -0.6 0.33 -0.31
70 AT2G36320 A20/AN1-like zinc finger family protein -0.59 0.3 -0.32
71 AT1G72440 CCAAT-binding factor embryo sac development arrest 25,
SLOW WALKER2		 -0.59 0.29 -0.31
72 AT1G07570 Protein kinase superfamily protein APK1, APK1A -0.59 0.31 -0.32
73 AT3G54290 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
N-terminal protein myristoylation; LOCATED IN: chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE
cation-binding motif (InterPro:IPR012312); Has 59 Blast
hits to 59 proteins in 14 species: Archae - 0; Bacteria -
2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 0.59 0.32 -0.32
74 AT3G50010 Cysteine/Histidine-rich C1 domain family protein -0.59 0.32 -0.35
75 AT4G27840 SNARE-like superfamily protein 0.59 0.29 -0.33
76 AT5G12980 Cell differentiation, Rcd1-like protein -0.59 0.31 -0.33
77 AT3G03440 ARM repeat superfamily protein 0.58 0.3 -0.32
78 AT3G04890 Uncharacterized conserved protein (DUF2358) 0.58 0.33 -0.3
79 AT5G26190 Cysteine/Histidine-rich C1 domain family protein 0.58 0.3 -0.32
80 AT5G46400 Tetratricopeptide repeat (TPR)-like superfamily protein AT PRP39-2, PRP39-2 0.57 0.34 -0.33
81 AT5G65480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G38060.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.57 0.3 -0.33
82 AT4G18990 xyloglucan endotransglucosylase/hydrolase 29 xyloglucan
endotransglucosylase/hydrolase 29		 0.57 0.29 -0.32
83 AT1G15320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower; EXPRESSED
DURING: petal differentiation and expansion stage; Has 62
Blast hits to 62 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.56 0.32 -0.32
84 AT2G32000 DNA topoisomerase, type IA, core 0.56 0.33 -0.35
85 AT2G37590 DNA binding with one finger 2.4 ATDOF2.4, DNA binding with one
finger 2.4		 0.55 0.3 -0.32
86 AT3G25160 ER lumen protein retaining receptor family protein 0.55 0.34 -0.3
87 AT1G60260 beta glucosidase 5 beta glucosidase 5 0.55 0.3 -0.33
88 AT5G16270 sister chromatid cohesion 1 protein 4 ARABIDOPSIS HOMOLOG OF RAD21 3,
sister chromatid cohesion 1
protein 4		 0.54 0.31 -0.32
89 AT5G51290 Diacylglycerol kinase family protein 0.54 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
90 C0142 Malonic acid - Malonate fatty acid biosynthesis (plant mitochondria) 1 0.31 -0.33 C0142
91 C0010 myo-Inositol-1-phosphate D,L-myo-Inositol-1-phosphate 1D-myo-Inositol (3)-phosphate myo-inositol biosynthesis,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) 		0.92 0.47 -0.45 C0010
92 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.88 0.47 -0.47 C0056
93 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.87 0.48 -0.45 C0032
94 C0026 2-Hydroxyisobutyric acid - - β oxidation 0.84 0.45 -0.42
95 C0003 α-Tocopherol - alpha-Tocopherol vitamin E biosynthesis 0.79 0.47 -0.44 C0003
96 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.79 0.48 -0.43 C0091
97 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.79 0.41 -0.43 C0099
98 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.79 0.44 -0.42 C0053
99 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.78 0.42 -0.45 C0262
100 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.78 0.45 -0.46 C0075
101 C0227 Ribose D-Ribose D-Ribose ribose degradation,
guanosine nucleotides degradation I,
pyrimidine salvage pathway,
pyridine nucleotide cycling (plants),
adenine and adenosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage II,
cis-zeatin biosynthesis,
adenosine nucleotides degradation I,
pyrimidine ribonucleosides degradation II 		-0.77 0.47 -0.47 C0227
102 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		0.74 0.44 -0.42 C0057
103 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		0.74 0.44 -0.46 C0027
104 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.73 0.45 -0.47 C0261
105 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.72 0.44 -0.45 C0087
106 C0239 Spermidine - Spermidine spermine biosynthesis,
spermine and spermidine degradation III,
beta-alanine biosynthesis I,
hypusine biosynthesis,
spermidine hydroxycinnamic acid conjugates biosynthesis,
spermidine biosynthesis I 		-0.72 0.47 -0.44 C0239
107 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway 0.71 0.3 -0.33 C0218
108 C0176 MST_2406.9 - - - 0.7 0.47 -0.43
109 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.69 0.45 -0.44 C0234
110 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		0.69 0.47 -0.45 C0011
111 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.68 0.47 -0.45 C0088
112 C0009 myo-Inositol - myo-Inositol stachyose biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
D-myo-inositol (1,4,5)-trisphosphate degradation,
galactosylcyclitol biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
phytate degradation I,
myo-inositol biosynthesis,
ajugose biosynthesis I (galactinol-dependent),
phospholipid biosynthesis II 		0.66 0.48 -0.47 C0009
113 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.66 0.47 -0.41 C0030
114 C0006 β-Homothreonine L-β-Homothreonine - - 0.65 0.45 -0.42
115 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.65 0.46 -0.49
116 C0170 MST_2128.3 - - - 0.64 0.44 -0.44
117 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II 0.63 0.3 -0.32 C0097
118 C0061 Aspartic acid L-Aspartic acid L-Aspartate purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging,
indole-3-acetyl-amino acid biosynthesis,
citrulline-nitric oxide cycle,
asparagine degradation I,
cyanide detoxification II,
asparagine biosynthesis I,
asparagine biosynthesis III (tRNA-dependent),
arginine biosynthesis I,
inosine-5'-phosphate biosynthesis II,
uridine-5'-phosphate biosynthesis,
aspartate biosynthesis,
homoserine biosynthesis,
lysine biosynthesis VI,
aspartate degradation II,
urea cycle,
purine nucleotides de novo biosynthesis II,
NAD biosynthesis I (from aspartate),
IAA degradation IV,
arginine biosynthesis II (acetyl cycle) 		0.6 0.32 -0.32 C0061
119 C0243 Succinic acid - Succinate flavonol biosynthesis,
glyoxylate cycle,
gibberellin biosynthesis III (early C-13 hydroxylation),
TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
aerobic respiration (alternative oxidase pathway),
gibberellin inactivation I (2beta-hydroxylation),
4-aminobutyrate degradation IV,
luteolin biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
leucodelphinidin biosynthesis,
glutamate degradation IV,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
succinate + a ubiquinone -> a ubiquinol + fumarate,
gibberellin biosynthesis II (early C-3 hydroxylation),
flavonoid biosynthesis,
superpathway of glyoxylate cycle and fatty acid degradation,
aerobic respiration (cytochrome c),
leucopelargonidin and leucocyanidin biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
scopoletin biosynthesis 		0.6 0.34 -0.31 C0243
120 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		0.59 0.33 -0.31 C0005
121 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		0.58 0.3 -0.3 C0022
122 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III 0.58 0.42 -0.42 C0195
123 C0062 Betain - - - 0.54 0.33 -0.32