C0260 : Tyrosine
Query Information
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ID C0260
Compound name Tyrosine
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=TYR
Pathway Information tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G57290 60S acidic ribosomal protein family -0.8 0.33 -0.3
2 AT4G38100 unknown protein; LOCATED IN: chloroplast thylakoid
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G01150.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.79 0.34 -0.31
3 AT5G47700 60S acidic ribosomal protein family -0.79 0.31 -0.32
4 AT2G19730 Ribosomal L28e protein family -0.79 0.33 -0.34
5 AT1G69620 ribosomal protein L34 ribosomal protein L34 -0.78 0.31 -0.33
6 AT5G67510 Translation protein SH3-like family protein -0.78 0.32 -0.32
7 AT5G27770 Ribosomal L22e protein family -0.78 0.33 -0.31
8 AT4G13170 Ribosomal protein L13 family protein -0.78 0.32 -0.32
9 AT5G10360 Ribosomal protein S6e embryo defective 3010, Ribosomal
protein small subunit 6b		 -0.78 0.33 -0.34
10 AT3G53890 Ribosomal protein S21e -0.77 0.31 -0.35
11 AT5G24840 tRNA (guanine-N-7) methyltransferase -0.77 0.34 -0.35
12 AT1G67430 Ribosomal protein L22p/L17e family protein -0.77 0.34 -0.31
13 AT1G26880 Ribosomal protein L34e superfamily protein -0.77 0.33 -0.34
14 AT1G15250 Zinc-binding ribosomal protein family protein -0.77 0.32 -0.3
15 AT2G32060 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein -0.77 0.33 -0.32
16 AT4G09320 Nucleoside diphosphate kinase family protein NDPK1 -0.76 0.32 -0.32
17 AT1G75560 zinc knuckle (CCHC-type) family protein -0.76 0.31 -0.32
18 AT4G15000 Ribosomal L27e protein family -0.76 0.32 -0.31
19 AT3G11400 eukaryotic translation initiation factor 3G1 ATEIF3G1, eukaryotic translation
initiation factor 3G1		 -0.76 0.31 -0.34
20 AT4G32160 Phox (PX) domain-containing protein 0.76 0.3 -0.34
21 AT3G10700 galacturonic acid kinase galacturonic acid kinase -0.75 0.34 -0.31
22 AT2G21195 unknown protein; Has 28 Blast hits to 28 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.75 0.33 -0.32
23 AT2G04520 Nucleic acid-binding, OB-fold-like protein -0.75 0.32 -0.3
24 AT5G05990 Mitochondrial glycoprotein family protein -0.75 0.33 -0.33
25 AT2G39460 ribosomal protein L23AA ARABIDOPSIS THALIANA RIBOSOMAL
PROTEIN L23A, RIBOSOMAL PROTEIN
L23A, RIBOSOMAL PROTEIN L23A1,
ribosomal protein L23AA		 -0.75 0.32 -0.31
26 AT4G16720 Ribosomal protein L23/L15e family protein -0.74 0.33 -0.32
27 AT2G27710 60S acidic ribosomal protein family -0.74 0.31 -0.33
28 AT1G61580 R-protein L3 B ARABIDOPSIS RIBOSOMAL PROTEIN 2,
R-protein L3 B		 -0.74 0.31 -0.3
29 AT3G47370 Ribosomal protein S10p/S20e family protein -0.74 0.32 -0.33
30 AT3G23390 Zinc-binding ribosomal protein family protein -0.74 0.32 -0.31
31 AT2G27530 Ribosomal protein L1p/L10e family PIGGYBACK1 -0.74 0.33 -0.32
32 AT3G05590 ribosomal protein L18 ribosomal protein L18 -0.74 0.34 -0.34
33 AT3G09200 Ribosomal protein L10 family protein -0.74 0.32 -0.31
34 AT3G53430 Ribosomal protein L11 family protein -0.73 0.34 -0.33
35 AT3G48930 Nucleic acid-binding, OB-fold-like protein embryo defective 1080 -0.73 0.29 -0.33
36 AT2G01250 Ribosomal protein L30/L7 family protein -0.73 0.3 -0.34
37 AT2G37190 Ribosomal protein L11 family protein -0.73 0.32 -0.29
38 AT3G53020 Ribosomal protein L24e family protein RIBOSOMAL PROTEIN L24, RPL24B,
SHORT VALVE1		 -0.73 0.32 -0.32
39 AT4G09720 RAB GTPase homolog G3A RAB GTPase homolog G3A, RAB GTPase
homolog G3A		 -0.73 0.33 -0.34
40 AT3G62870 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein -0.73 0.31 -0.3
41 AT2G44120 Ribosomal protein L30/L7 family protein -0.72 0.32 -0.33
42 AT2G45710 Zinc-binding ribosomal protein family protein -0.72 0.3 -0.33
43 AT3G05560 Ribosomal L22e protein family -0.72 0.32 -0.31
44 AT1G24360 NAD(P)-binding Rossmann-fold superfamily protein -0.72 0.31 -0.34
45 AT5G39740 ribosomal protein L5 B OLIGOCELLULA 7, ribosomal protein
L5 B		 -0.72 0.31 -0.3
46 AT1G23290 Ribosomal protein L18e/L15 superfamily protein RIBOSOMAL PROTEIN L27A, RPL27AB -0.72 0.32 -0.33
47 AT4G29410 Ribosomal L28e protein family -0.72 0.31 -0.32
48 AT3G18740 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein receptor-like kinase 902 -0.72 0.32 -0.32
49 AT3G04400 Ribosomal protein L14p/L23e family protein embryo defective 2171 -0.72 0.32 -0.35
50 AT1G79650 Rad23 UV excision repair protein family Arabidopsis thaliana aldehyde
oxidase 1, RADIATION SENSITIVE23B		 -0.72 0.32 -0.32
51 AT5G06770 KH domain-containing protein / zinc finger (CCCH type)
family protein		 -0.72 0.31 -0.32
52 AT5G64816 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.71 0.3 -0.33
53 AT1G04480 Ribosomal protein L14p/L23e family protein -0.71 0.32 -0.32
54 AT2G21580 Ribosomal protein S25 family protein -0.71 0.33 -0.31
55 AT1G02780 Ribosomal protein L19e family protein embryo defective 2386 -0.71 0.32 -0.31
56 AT5G03850 Nucleic acid-binding, OB-fold-like protein -0.71 0.31 -0.32
57 AT3G27080 translocase of outer membrane 20 kDa subunit 3 translocase of outer membrane 20
kDa subunit 3		 -0.71 0.31 -0.32
58 AT5G27700 Ribosomal protein S21e -0.71 0.3 -0.32
59 AT1G13380 Protein of unknown function (DUF1218) -0.71 0.3 -0.32
60 AT3G23710 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-III,
translocon at the inner envelope
membrane of chloroplasts 22-III		 -0.71 0.32 -0.3
61 AT5G41760 Nucleotide-sugar transporter family protein -0.7 0.34 -0.31
62 AT5G51960 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein
(InterPro:IPR008011); Has 45 Blast hits to 45 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.7 0.32 -0.32
63 AT2G37600 Ribosomal protein L36e family protein -0.7 0.31 -0.32
64 AT1G76300 snRNP core protein SMD3 snRNP core protein SMD3 -0.7 0.32 -0.34
65 AT3G13470 TCP-1/cpn60 chaperonin family protein chaperonin-60beta2 -0.7 0.31 -0.32
66 AT5G25080 Sas10/Utp3/C1D family -0.7 0.33 -0.33
67 AT2G32220 Ribosomal L27e protein family -0.7 0.29 -0.32
68 AT2G39390 Ribosomal L29 family protein -0.7 0.34 -0.29
69 AT4G31985 Ribosomal protein L39 family protein -0.69 0.33 -0.32
70 AT2G27720 60S acidic ribosomal protein family -0.69 0.31 -0.33
71 AT4G26840 small ubiquitin-like modifier 1 ARABIDOPSIS THALIANA SMALL
UBIQUITIN-LIKE MODIFIER 1, SMALL
UBIQUITIN-LIKE MODIFIER 1, SMALL
UBIQUITIN-LIKE MODIFIER 1, small
ubiquitin-like modifier 1		 -0.69 0.33 -0.33
72 AT3G48425 DNAse I-like superfamily protein -0.69 0.31 -0.31
73 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 -0.69 0.33 -0.34
74 AT4G02230 Ribosomal protein L19e family protein -0.69 0.29 -0.32
75 AT1G48830 Ribosomal protein S7e family protein -0.69 0.35 -0.31
76 AT1G12830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 39778
Blast hits to 22088 proteins in 1060 species: Archae - 152;
Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants -
2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI
BLink).		 -0.69 0.31 -0.32
77 AT4G14100 transferases, transferring glycosyl groups -0.68 0.33 -0.33
78 AT1G26450 Carbohydrate-binding X8 domain superfamily protein 0.68 0.32 -0.32
79 AT1G31480 shoot gravitropism 2 (SGR2) SHOOT GRAVITROPISM 2 0.68 0.32 -0.33
80 AT3G26730 RING/U-box superfamily protein 0.68 0.31 -0.31
81 AT5G15200 Ribosomal protein S4 -0.68 0.3 -0.33
82 AT2G45860 unknown protein; Has 32 Blast hits to 32 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.68 0.31 -0.32
83 AT5G23900 Ribosomal protein L13e family protein -0.68 0.32 -0.32
84 AT3G09500 Ribosomal L29 family protein -0.68 0.32 -0.32
85 AT4G00170 Plant VAMP (vesicle-associated membrane protein) family
protein		 -0.68 0.29 -0.31
86 AT3G04650 FAD/NAD(P)-binding oxidoreductase family protein -0.68 0.33 -0.3
87 AT5G08400 Protein of unknown function (DUF3531) -0.68 0.33 -0.3
88 AT5G02220 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.68 0.33 -0.32
89 AT2G23670 homolog of Synechocystis YCF37 homolog of Synechocystis YCF37 -0.68 0.31 -0.32
90 AT2G19540 Transducin family protein / WD-40 repeat family protein -0.68 0.33 -0.34
91 AT1G32130 Transcription elongation factor (TFIIS) family protein ARABIDOPSIS THALIANA IWS1 (FROM
YEAST INTERACTS WITH SPT6), HIGH
NITROGEN INSENSITIVE 9, IWS1		 0.67 0.31 -0.33
92 AT4G08670 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.67 0.31 -0.33
93 AT2G45910 U-box domain-containing protein kinase family protein 0.65 0.32 -0.28
94 AT5G63200 tetratricopeptide repeat (TPR)-containing protein 0.64 0.32 -0.33
95 AT5G46340 O-acetyltransferase family protein REDUCED WALL ACETYLATION 1 0.64 0.3 -0.32
96 AT5G39910 Pectin lyase-like superfamily protein 0.63 0.32 -0.33
97 AT2G42700 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
vesicle-mediated transport, vesicle docking involved in
exocytosis; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like
protein (InterPro:IPR001619); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.63 0.31 -0.33
98 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein 0.63 0.32 -0.31
99 AT4G26180 Mitochondrial substrate carrier family protein 0.61 0.33 -0.31
100 AT5G42600 marneral synthase marneral synthase 0.6 0.3 -0.31
101 AT3G56590 hydroxyproline-rich glycoprotein family protein 0.6 0.32 -0.32
102 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 0.6 0.32 -0.33
103 AT3G08020 PHD finger family protein 0.6 0.3 -0.29
104 AT4G18990 xyloglucan endotransglucosylase/hydrolase 29 xyloglucan
endotransglucosylase/hydrolase 29		 0.6 0.3 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
105 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		1 0.3 -0.32 C0260
106 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		0.91 0.3 -0.33 C0257
107 C0026 2-Hydroxyisobutyric acid - - β oxidation 0.87 0.44 -0.46
108 C0054 Agmatine - Agmatine putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis 		0.82 0.32 -0.33 C0054
109 C0014 O-Acetylserine O-Acetyl-L-serine O-Acetyl-L-serine cysteine biosynthesis I,
seleno-amino acid biosynthesis 		0.81 0.34 -0.31 C0014
110 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.8 0.43 -0.42 C0032
111 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		0.78 0.3 -0.32 C0137
112 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		0.78 0.31 -0.3 C0140
113 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.77 0.44 -0.44 C0091
114 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.77 0.42 -0.46 C0056
115 C0243 Succinic acid - Succinate flavonol biosynthesis,
glyoxylate cycle,
gibberellin biosynthesis III (early C-13 hydroxylation),
TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
aerobic respiration (alternative oxidase pathway),
gibberellin inactivation I (2beta-hydroxylation),
4-aminobutyrate degradation IV,
luteolin biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
leucodelphinidin biosynthesis,
glutamate degradation IV,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
succinate + a ubiquinone -> a ubiquinol + fumarate,
gibberellin biosynthesis II (early C-3 hydroxylation),
flavonoid biosynthesis,
superpathway of glyoxylate cycle and fatty acid degradation,
aerobic respiration (cytochrome c),
leucopelargonidin and leucocyanidin biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
scopoletin biosynthesis 		0.77 0.34 -0.3 C0243
116 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		0.76 0.32 -0.33 C0052
117 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.74 0.42 -0.41 C0099
118 C0183 MST_3033.1 - - - -0.73 0.45 -0.46
119 C0216 Proline L-Proline L-Proline proline degradation II,
arginine degradation VI (arginase 2 pathway),
L-Ndelta-acetylornithine biosynthesis,
tRNA charging,
citrulline biosynthesis,
proline biosynthesis III 		0.7 0.32 -0.29 C0216
120 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.7 0.46 -0.43 C0053
121 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		0.69 0.44 -0.43 C0027
122 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.69 0.48 -0.44
123 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine -0.69 0.46 -0.44 C0033
124 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		0.68 0.31 -0.33 C0022
125 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway 0.68 0.3 -0.32 C0218
126 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.67 0.44 -0.43 C0262
127 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		0.67 0.47 -0.45 C0073
128 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.67 0.49 -0.43 C0075
129 C0062 Betain - - - 0.66 0.32 -0.33
130 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		0.63 0.32 -0.32 C0005
131 C0068 Citric acid - Citrate acetyl-CoA biosynthesis (from citrate),
TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle 		0.62 0.34 -0.31 C0068
132 C0066 Choline - Choline choline biosynthesis III,
phosphatidylcholine biosynthesis I,
choline biosynthesis I,
glycine betaine biosynthesis III (plants),
choline biosynthesis II,
sinapate ester biosynthesis,
phospholipases 		0.61 0.3 -0.32 C0066