AT2G34840 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT2G34840
Description Coatomer epsilon subunit
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G34840 Coatomer epsilon subunit 1 0.31 -0.3
2 AT2G25450 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.78 0.31 -0.31
3 AT3G56270 Plant protein of unknown function (DUF827) 0.75 0.32 -0.32
4 AT4G36880 cysteine proteinase1 cysteine proteinase1 -0.75 0.32 -0.28
5 AT2G27610 Tetratricopeptide repeat (TPR)-like superfamily protein -0.74 0.31 -0.32
6 AT3G60810 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1499 (InterPro:IPR010865); Has 444
Blast hits to 444 proteins in 143 species: Archae - 0;
Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51;
Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).		 0.73 0.33 -0.34
7 AT3G22250 UDP-Glycosyltransferase superfamily protein 0.72 0.31 -0.32
8 AT4G16900 Disease resistance protein (TIR-NBS-LRR class) family 0.71 0.33 -0.32
9 AT5G34790 transposable element gene -0.71 0.33 -0.31
10 AT1G02550 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.7 0.31 -0.33
11 AT5G16150 plastidic GLC translocator GLUCOSE TRANSPORTER 1, plastidic
GLC translocator		 0.7 0.32 -0.31
12 AT4G19500 nucleoside-triphosphatases;transmembrane
receptors;nucleotide binding;ATP binding		 0.7 0.33 -0.32
13 AT2G21800 essential meiotic endonuclease 1A essential meiotic endonuclease 1A,
EME1A, essential meiotic
endonuclease 1A		 -0.69 0.3 -0.33
14 AT2G33690 Late embryogenesis abundant protein, group 6 -0.69 0.31 -0.32
15 AT5G65760 Serine carboxypeptidase S28 family protein 0.69 0.33 -0.31
16 AT5G43850 RmlC-like cupins superfamily protein ARD4, ATARD4 0.68 0.31 -0.31
17 AT1G06560 NOL1/NOP2/sun family protein -0.68 0.31 -0.31
18 AT3G10200 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.68 0.33 -0.32
19 AT1G60995 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s:
Membralin (InterPro:IPR019144); Has 172 Blast hits to 170
proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa -
110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes
- 24 (source: NCBI BLink).		 -0.68 0.3 -0.3
20 AT3G10990 F-box associated ubiquitination effector family protein 0.68 0.29 -0.31
21 AT2G20150 unknown protein; Has 5 Blast hits to 5 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.68 0.32 -0.32
22 AT3G22480 prefoldin 2 prefoldin 2 -0.68 0.3 -0.3
23 AT5G14510 ARM repeat superfamily protein 0.68 0.34 -0.34
24 AT2G04070 MATE efflux family protein -0.68 0.33 -0.32
25 AT2G27775 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
Tetratricopeptide repeat (TPR)-like superfamily protein
(TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.68 0.3 -0.31
26 AT3G56090 ferritin 3 ferritin 3, ferritin 3 -0.68 0.33 -0.32
27 AT2G15042 Leucine-rich repeat (LRR) family protein 0.67 0.31 -0.31
28 AT3G44950 glycine-rich protein 0.67 0.32 -0.32
29 AT3G52030 F-box family protein with WD40/YVTN repeat doamin 0.67 0.32 -0.32
30 AT3G03150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast
hits to 39 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.34 -0.3
31 AT1G62040 Ubiquitin-like superfamily protein autophagy 8c 0.67 0.33 -0.31
32 AT4G38940 Galactose oxidase/kelch repeat superfamily protein -0.67 0.31 -0.33
33 AT5G16550 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.67 0.32 -0.31
34 AT2G20770 GCR2-like 2 GCR2-like 2 0.67 0.33 -0.33
35 AT1G11940 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.67 0.3 -0.28
36 AT4G26980 RNI-like superfamily protein 0.67 0.34 -0.31
37 AT4G09950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.66 0.31 -0.32
38 AT1G69800 Cystathionine beta-synthase (CBS) protein 0.66 0.32 -0.31
39 AT3G02490 Pentatricopeptide repeat (PPR) superfamily protein -0.66 0.33 -0.33
40 AT5G47360 Tetratricopeptide repeat (TPR)-like superfamily protein -0.66 0.33 -0.31
41 AT5G03770 KDO transferase A AtKdtA, KDO transferase A 0.66 0.35 -0.3
42 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.66 0.31 -0.31
43 AT5G09250 ssDNA-binding transcriptional regulator KIWI -0.66 0.3 -0.31
44 AT3G01570 Oleosin family protein 0.66 0.32 -0.34
45 AT1G54770 Fcf2 pre-rRNA processing protein -0.65 0.31 -0.32
46 AT2G32810 beta galactosidase 9 beta galactosidase 9,
beta-galactosidase 9		 0.65 0.33 -0.31
47 AT5G58370 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.65 0.34 -0.31
48 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 0.65 0.31 -0.3
49 AT5G18360 Disease resistance protein (TIR-NBS-LRR class) family 0.65 0.31 -0.31
50 AT4G39180 Sec14p-like phosphatidylinositol transfer family protein ARABIDOPSIS THALIANA SECRETION 14,
SECRETION 14		 0.65 0.3 -0.31
51 AT1G44770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits
to 81 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.32 -0.31
52 AT5G18870 Inosine-uridine preferring nucleoside hydrolase family
protein		 nucleoside hydrolase 5 0.64 0.31 -0.32
53 AT4G21650 Subtilase family protein 0.64 0.3 -0.3
54 AT5G37670 HSP20-like chaperones superfamily protein 0.64 0.3 -0.31
55 AT2G47310 flowering time control protein-related / FCA gamma-related 0.64 0.32 -0.31
56 AT1G63810 CONTAINS InterPro DOMAIN/s: Nrap protein
(InterPro:IPR005554); Has 396 Blast hits to 382 proteins in
182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi
- 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60
(source: NCBI BLink).		 -0.63 0.3 -0.33
57 AT4G32520 serine hydroxymethyltransferase 3 SERINE HYDROXYMETHYLTRANSFERASE 3,
serine hydroxymethyltransferase 3		 -0.63 0.35 -0.33
58 AT1G33220 Glycosyl hydrolase superfamily protein 0.63 0.32 -0.3
59 AT5G45690 Protein of unknown function (DUF1264) 0.63 0.33 -0.33
60 AT3G29380 Cyclin-like family protein plant-specific TFIIB-related
protein 2		 0.63 0.31 -0.3
61 AT5G07250 RHOMBOID-like protein 3 RHOMBOID-like protein 3,
RHOMBOID-like protein 3		 0.63 0.31 -0.31
62 AT5G59450 GRAS family transcription factor -0.63 0.31 -0.32
63 AT1G73750 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 0.62 0.33 -0.32
64 AT2G25650 DNA-binding storekeeper protein-related transcriptional
regulator		 0.62 0.32 -0.3
65 AT1G48320 Thioesterase superfamily protein 0.62 0.32 -0.3
66 AT5G10220 annexin 6 annexin 6, ANNEXIN ARABIDOPSIS
THALIANA 6		 -0.62 0.33 -0.32
67 AT2G16960 ARM repeat superfamily protein 0.62 0.31 -0.31
68 AT5G11910 alpha/beta-Hydrolases superfamily protein 0.62 0.3 -0.33
69 AT4G32960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits
to 106 proteins in 39 species: Archae - 0; Bacteria - 0;
Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 0.62 0.3 -0.31
70 AT3G22490 Seed maturation protein 0.62 0.32 -0.32
71 AT3G13672 TRAF-like superfamily protein 0.62 0.3 -0.33
72 AT2G29580 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5B 0.62 0.32 -0.3
73 AT1G48470 glutamine synthetase 1;5 glutamine synthetase 1;5 0.61 0.32 -0.34
74 AT1G21850 SKU5 similar 8 SKU5 similar 8 0.61 0.32 -0.33
75 AT1G55460 DNA/RNA-binding protein Kin17, conserved region 0.61 0.31 -0.3
76 AT5G41180 leucine-rich repeat transmembrane protein kinase family
protein		 -0.61 0.32 -0.3
77 AT1G56710 Pectin lyase-like superfamily protein 0.61 0.33 -0.29
78 AT5G11760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1764, eukaryotic (InterPro:IPR013885);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.61 0.3 -0.31
79 AT4G32120 Galactosyltransferase family protein -0.61 0.33 -0.33
80 AT1G63600 Receptor-like protein kinase-related family protein 0.61 0.33 -0.33
81 AT1G25490 ARM repeat superfamily protein ATB BETA BETA, ENHANCED ETHYLENE
RESPONSE 1, ROOTS CURL IN NPA,
REGA		 -0.61 0.31 -0.31
82 AT3G28910 myb domain protein 30 ATMYB30, myb domain protein 30 -0.61 0.34 -0.31
83 AT1G49840 Protein of unknown function (DUF620) -0.61 0.33 -0.31
84 AT5G55370 MBOAT (membrane bound O-acyl transferase) family protein -0.6 0.33 -0.31
85 AT3G06433 pseudogene of nodulin MtN3 family protein 0.6 0.32 -0.31
86 AT4G27640 ARM repeat superfamily protein -0.6 0.32 -0.29
87 AT1G65130 Ubiquitin carboxyl-terminal hydrolase-related protein 0.6 0.31 -0.3
88 AT3G12820 myb domain protein 10 myb domain protein 10, myb domain
protein 10		 -0.6 0.33 -0.31
89 AT3G02940 myb domain protein 107 myb domain protein 107, myb domain
protein 107		 -0.6 0.31 -0.31
90 AT1G07970 CONTAINS InterPro DOMAIN/s: Cytochrome B561-related,
N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213
proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa -
131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes
- 14 (source: NCBI BLink).		 -0.6 0.31 -0.33
91 AT1G71450 Integrase-type DNA-binding superfamily protein -0.6 0.32 -0.32
92 AT3G11930 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.6 0.31 -0.31
93 AT4G31880 LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast
hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants -
6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink).		 -0.6 0.32 -0.31
94 AT3G12140 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML1, EMSY-like 1 -0.59 0.32 -0.32
95 AT3G52450 plant U-box 22 plant U-box 22 -0.59 0.34 -0.31
96 AT5G39100 germin-like protein 6 germin-like protein 6 -0.58 0.34 -0.32
97 AT1G21290 transposable element gene -0.58 0.32 -0.33
98 AT2G28360 SIT4 phosphatase-associated family protein -0.58 0.32 -0.31
99 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 -0.58 0.3 -0.31
100 AT3G06710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
RING/FYVE/PHD zinc finger superfamily protein
(TAIR:AT4G32670.1); Has 15 Blast hits to 15 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.31 -0.31
101 AT4G33160 F-box family protein -0.57 0.33 -0.32
102 AT5G05290 expansin A2 ATEXP2, expansin A2, ATHEXP ALPHA
1.12, EXPANSIN 2, expansin A2		 -0.57 0.31 -0.33
103 AT5G40250 RING/U-box superfamily protein -0.57 0.31 -0.33
104 AT4G14850 Pentatricopeptide repeat (PPR) superfamily protein lovastatin insensitive 1, MEF11 -0.57 0.33 -0.32
105 AT1G50140 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.57 0.29 -0.31
106 AT1G21950 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G21940.1); Has 10 Blast hits
to 10 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.32 -0.31
107 AT3G42710 transposable element gene -0.57 0.31 -0.29
108 AT3G26980 membrane-anchored ubiquitin-fold protein 4 precursor membrane-anchored ubiquitin-fold
protein 4 precursor		 -0.57 0.31 -0.33
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
109 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.87 0.42 -0.48 C0099
110 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		0.85 0.46 -0.45 C0186
111 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.84 0.46 -0.45 C0030
112 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.83 0.45 -0.45 C0056
113 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.83 0.48 -0.47 C0234
114 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.82 0.45 -0.43 C0053
115 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.8 0.46 -0.46 C0261
116 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.79 0.42 -0.43 C0075
117 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.78 0.47 -0.45 C0262
118 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.76 0.45 -0.43 C0032
119 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.76 0.45 -0.45 C0088
120 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.76 0.42 -0.43
121 C0259 Tyramine - Tyramine hydroxycinnamic acid tyramine amides biosynthesis,
suberin biosynthesis 		0.75 0.31 -0.31 C0259
122 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		0.73 0.3 -0.28 C0005
123 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.72 0.44 -0.43 C0091
124 C0094 Galactosamine D-Galactosamine - - 0.7 0.46 -0.42
125 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		0.69 0.32 -0.31 C0137
126 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		0.69 0.43 -0.45 C0073
127 C0026 2-Hydroxyisobutyric acid - - β oxidation 0.67 0.45 -0.43
128 C0054 Agmatine - Agmatine putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis 		0.65 0.3 -0.3 C0054
129 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.65 0.47 -0.45 C0087
130 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		0.63 0.33 -0.35 C0052
131 C0006 β-Homothreonine L-β-Homothreonine - - 0.63 0.43 -0.44
132 C0114 Homocystine L-Homocystine - - 0.62 0.31 -0.31
133 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II 0.62 0.32 -0.31 C0097
134 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		0.61 0.43 -0.46 C0027
135 C0062 Betain - - - 0.6 0.31 -0.3
136 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		0.6 0.32 -0.3 C0022
137 C0147 Mannose D-Mannose D-Mannose mannose degradation,
mannitol degradation II 		0.6 0.28 -0.32 C0147