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Estradiol4 days
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 Estradiol4 days Col Estradiol 10 µM /
seedling		 Col GEO bulk 1.00  
1.00  
2 Seeds stage8 w/o siliques Col-0 no treatment / seeds
stage 8, w/o siliques
(long days)		 Control for tissue data Developmental series; organs / tissues at different ages 0.86  
0.52  
3 ARR21C-ox ARR21C-ox no treatment / seedling Col-0 ARR21C overexpression 0.82  
0.19  
4 Mature pollen Col-0 no treatment / mature
pollen		 Control for tissue data Developmental series; organs / tissues at different ages 0.75  
0.10  
5 Mature roots Col-0 no treatment / roots Control for tissue data Developmental series; organs / tissues at different ages 0.66  
0.38  
6 Stamen stage15 Col-0 no treatment / flowers
stage 15 stamen		 Control for tissue data Developmental series; organs / tissues at different ages 0.63  
0.13  
7 Rosette leaf No12 gl1-T no treatment / rosette
leaf #12		 Control for tissue data Developmental series; organs / tissues at different ages -0.62  
-0.27  
8 Hypocotyl Col-0 no treatment /
hypocotyls		 Control for tissue data Developmental series; organs / tissues at different ages 0.61  
0.21  
9 Mutant phyB (Red Light 1h) phyB Red Light / seedling Red Light 1h GEO bulk -0.60  
-0.10  
10 Mutant cry1 cry1 Continuous white light /
seedling		 Col-0 GEO bulk 0.59  
-0.15  
11 Mutant lfy-12(shoot apex) lfy-12 no treatment / shoot
apex, inflorescence
(after bolting)		 Shoot apex inflorescence (after bolting) Developmental series; organs / tissues at different ages -0.58  
-0.19  
12 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.54  
0.31  
13 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.54  
0.17  
14 Proximalhalf (leaf7) Col-0 no treatment / leaf 7,
proximal half		 Control for tissue data Developmental series; organs / tissues at different ages -0.53  
-0.25  
15 Distal half (leaf7) Col-0 no treatment / leaf 7,
distal half		 Control for tissue data Developmental series; organs / tissues at different ages -0.53  
-0.22  
16 Mutant phyB (Dark) phyB Dark / seedling Wild type(Dark) GEO bulk -0.52  
-0.33  
17 Mutant ufo-1(shoot apex) ufo-1 no treatment / shoot
apex, inflorescence
(after bolting)		 Shoot apex inflorescence (after bolting) Developmental series; organs / tissues at different ages -0.51  
-0.13  
18 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 0.51  
-0.04  
19 Uniconazole 3 h Col-0 10 µM uniconazole /
seedling		 Mock 3 h Effect of GA inhibitors on seedlings -0.50  
0.22  
20 DC3000 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.50  
0.15  
21 Flagellin 4 h (leaf) Col-0 infiltrated with 1
µM Flg22 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.50  
0.21  
22 Petals stage15 Col-0 no treatment / flowers
stage 15, petals		 Control for tissue data Developmental series; organs / tissues at different ages 0.50  
0.12  
23 Expanding leaf Col-0 no treatment / leaves
(CAGE, long days)		 Control for tissue data Developmental series; organs / tissues at different ages -0.50  
-0.19  
24 Phytoprostane A1 4 h Col 75 µM phytoprostane
A1 / seedling		 Col-0 GEO bulk 0.50  
0.29  
25 Dark 4 h pls RedLight 1min Col-0 1 min. red light pulse
followed by 4 h of
darkness / seedlings		 Dark 4 h Light treatments -0.46  
-0.59  
26 Dark 4 h pls UV-A 5 min Col-0 5 min. UV-A light pulse
followed by 4 h of
darkness / seedlings		 Dark 4 h Light treatments -0.43  
-0.52  
27 Methyl Jasmonate 1 h Col-0 10 µM Metyl
Jasmonate / seedling		 Mock 1 h Basic hormone treatment of seedlings 0.24  
-0.51