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K starvation (shoot)
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 1.00  
1.00  
2 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages 0.76  
0.62  
3 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.75  
0.74  
4 Flowers stage15 Col-0 no treatment / flowers
stage 15		 Control for tissue data Developmental series; organs / tissues at different ages 0.69  
0.42  
5 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.66  
0.70  
6 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.66  
0.56  
7 Mutant siz1-3 (Drought) siz1-3 Drought / not
identified		 Col-0 (Drought) GEO bulk 0.66  
0.51  
8 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
phaseolicola harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.62  
0.73  
9 GST NPP1 4 h (leaf) Col-0 infiltrated with 1
µM GST-NPP1 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.61  
0.62  
10 Flagellin 4 h (leaf) Col-0 infiltrated with 1
µM Flg22 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.61  
0.58  
11 HairpinZ 4 h (leaf) Col-0 infiltrated with 10
µM HrpZ / leaves		 Mock 4 h (leaf) Elicitor treatments 0.59  
0.63  
12 DC3000 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.57  
0.62  
13 ARR21C-ox ARR21C-ox no treatment / seedling Col-0 ARR21C overexpression 0.56  
0.45  
14 Mutant siz1-3 siz1-3 mock / not identified Col-0 GEO bulk 0.56  
0.59  
15 ARR22-ox (t-zeatin 3 h) ARR22-ox 20 µM t-zeatin /
seedling		 Col-0 (t-zeatin 3 h) Cytokinin treatment of seedlings 0.54  
0.46  
16 Stamen stage15 Col-0 no treatment / flowers
stage 15 stamen		 Control for tissue data Developmental series; organs / tissues at different ages 0.53  
0.40  
17 Expanding leaf Col-0 no treatment / leaves
(CAGE, long days)		 Control for tissue data Developmental series; organs / tissues at different ages -0.53  
-0.41  
18 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings 0.51  
0.53  
19 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.51  
0.54  
20 Wounding Stress3 h (shoot) Col-0 wounding (punctured with
pins at beginning of
treatment) / shoots		 Stress mock 3 h (shoot) Stress treatments 0.50  
0.76  
21 Mutant iaa17-6 iaa17-6 mock / seedling Col GEO bulk 0.50  
0.58  
22 Cycloheximide 3 h Col-0 10 µM CHX /
seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.47  
0.52  
23 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato avrRpm1 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.47  
0.56  
24 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments 0.47  
0.54  
25 ABA 3 h Col-0 10 µM ABA / seedling Mock 3 h Basic hormone treatment of seedlings 0.45  
0.66  
26 Salt Stress 24 h (shoot) Col-0 salt stress (150 mM
NaCl) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.44  
0.70  
27 Mutant arf2-6 (IAA) arf2-6 5 µM IAA / seedling Col (IAA) GEO bulk -0.43  
-0.53  
28 Mutant iaa5_6_19 iaa5 iaa6 iaa19 mock / seedling Col GEO bulk 0.41  
0.56  
29 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments 0.39  
0.61  
30 FarRed Light 4 h Col-0 continuous far red light
/ seedlings		 White Light 4 h Light treatments 0.36  
0.51  
31 Mutant cry1 (High Light) cry1 high light: 1000
µmol quanta m-2 s-1
/ seedling		 Col-0 (High Light) GEO bulk -0.36  
-0.50  
32 Cold Stress 24 h (shoot) Col-0 cold stress (4˚) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.35  
0.50  
33 UV Stress 24 h (shoot) Col-0 UV-B stress (15 min 1.8
W/m2 Philips TL40W/12;
thereafter recovery) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.35  
0.58  
34 K starvation (root) ws-2 K starvation / root Ws (root) GEO bulk 0.33  
0.52  
35 Selenate (shoot) WS Selenate 40 µM /
shoot		 Ws (shoot) GEO bulk 0.30  
0.66  
36 Red Light 45min Col-0 continuous red light /
seedlings		 White Light 45min Light treatments -0.29  
-0.55  
37 Blue Light 4 h Col-0 continuous Blue Light /
seedlings		 White Light 4 h Light treatments 0.27  
0.53  
38 Mutant gh3.5-1D (AvrRpt2) gh3.5-1D Pst DC3000(avrRpt2) /
leaves		 Col-0 (AvrRpt2) GEO bulk 0.27  
0.60  
39 FarRed Light 45min Col-0 continuous far red light
/ seedlings		 White Light 45min Light treatments -0.23  
-0.52  
40 Methyl Jasmonate 0.5 h Col-0 10 µM MJ / seedling Mock 0.5 h Basic hormone treatment of seedlings 0.17  
0.50  
41 Methyl Jasmonate 1 h Col-0 10 µM Metyl
Jasmonate / seedling		 Mock 1 h Basic hormone treatment of seedlings 0.17  
0.55  
42 Estradiol4 days Col Estradiol 10 µM /
seedling		 Col GEO bulk -0.04  
0.51