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Osmotic Stress 24 h (shoot)
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Score Experiment Genotype Treatment / Tissue Control Experiment Experimental Category Correlation Gene list
1 Osmotic Stress 24 h (shoot) Col-0 osmotic stress (300 mM
mannitol) / shoots		 Stress mock 24 h (shoot) Stress treatments 1.00  
1.00  
2 Salt Stress 24 h (shoot) Col-0 salt stress (150 mM
NaCl) / shoots		 Stress mock 24 h (shoot) Stress treatments 0.87  
0.88  
3 ABA 3 h Col-0 10 µM ABA / seedling Mock 3 h Basic hormone treatment of seedlings 0.75  
0.74  
4 Senescing leaf Col-0 no treatment / senescing
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.75  
0.74  
5 Sepals stage15 Col-0 no treatment / flowers
stage 15, sepals		 Control for tissue data Developmental series; organs / tissues at different ages 0.75  
0.70  
6 K starvation (shoot) ws-2 K starvation / shoot Ws (shoot) GEO bulk 0.74  
0.75  
7 Mutant gh3.5-1D (AvrRpt2) gh3.5-1D Pst DC3000(avrRpt2) /
leaves		 Col-0 (AvrRpt2) GEO bulk 0.69  
0.78  
8 Osmotic Stress 24 h (root) Col-0 osmotic stress (300 mM
mannitol) / roots		 Stress mock 24 h (root) Stress treatments 0.68  
0.73  
9 Cold Stress 24 h (shoot) Col-0 cold stress (4˚) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.67  
0.71  
10 ARR22-ox (t-zeatin 3 h) ARR22-ox 20 µM t-zeatin /
seedling		 Col-0 (t-zeatin 3 h) Cytokinin treatment of seedlings 0.66  
0.58  
11 Salt Stress 24 h (root) Col-0 salt stress (150 mM
NaCl) / roots		 Stress mock 24 h (root) Stress treatments 0.66  
0.57  
12 P. infestans 6 h (leaf) Col-0 P. infestans 6 h (leaf)
/ leaves		 Mock 6 h (leaf) Elicitor treatments 0.65  
0.77  
13 Seeds stage8 w/o siliques Col-0 no treatment / seeds
stage 8, w/o siliques
(long days)		 Control for tissue data Developmental series; organs / tissues at different ages 0.63  
0.47  
14 GST NPP1 4 h (leaf) Col-0 infiltrated with 1
µM GST-NPP1 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.61  
0.69  
15 DC3000 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.59  
0.64  
16 Phaseolicola 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
phaseolicola harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.59  
0.75  
17 Flagellin 4 h (leaf) Col-0 infiltrated with 1
µM Flg22 / leaves		 Mock 4 h (leaf) Elicitor treatments 0.59  
0.60  
18 HairpinZ 4 h (leaf) Col-0 infiltrated with 10
µM HrpZ / leaves		 Mock 4 h (leaf) Elicitor treatments 0.56  
0.67  
19 P.syringae AvrRpt2 4 h (leaf) Col-0 P.syringae avrRpt2 4 h
(leaf) / leaves		 Mock 4 h (leaf) Elicitor treatments 0.56  
0.61  
20 Phytoprostane A1 4 h Col 75 µM phytoprostane
A1 / seedling		 Col-0 GEO bulk 0.55  
0.60  
21 Lipopolysaccaride4 h (leaf) Col-0 infiltrated with 100
µg/ml LPS / leaves		 Mock 4 h (leaf) Elicitor treatments 0.54  
0.70  
22 Flowers stage15 Col-0 no treatment / flowers
stage 15		 Control for tissue data Developmental series; organs / tissues at different ages 0.54  
0.31  
23 ARR22-ox ARR22-ox no treatment / seedling Col-0 Cytokinin treatment of seedlings 0.52  
0.35  
24 Drought Stress 24 h (shoot) Col-0 drought (15 min. dry air
then further incubation
in closed vessel) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.52  
0.52  
25 Shoot apex vegetative &Young leaves Col-0 no treatment / shoot
apex, vegetative and
young leaves		 Control for tissue data Developmental series; organs / tissues at different ages -0.52  
-0.55  
26 Stamen stage15 Col-0 no treatment / flowers
stage 15 stamen		 Control for tissue data Developmental series; organs / tissues at different ages 0.52  
0.46  
27 Mutant iaa17-6 iaa17-6 mock / seedling Col GEO bulk 0.52  
0.40  
28 AgNO3 3 h Col-0 10 µM AgNO3 /
seedling		 Mock 3 h Effect of ethylene inhibitors on seedlings 0.51  
0.61  
29 Petals stage15 Col-0 no treatment / flowers
stage 15, petals		 Control for tissue data Developmental series; organs / tissues at different ages 0.51  
0.49  
30 Selenate (shoot) WS Selenate 40 µM /
shoot		 Ws (shoot) GEO bulk 0.50  
0.55  
31 ABA 1 h Col-0 10 µM ABA / seedling Mock 1 h Basic hormone treatment of seedlings 0.49  
0.72  
32 GST 4 h (leaf) Col-0 infiltrated with 1µM
GST / leaves		 Mock 4 h (leaf) Elicitor treatments 0.49  
0.73  
33 UV Stress 24 h (shoot) Col-0 UV-B stress (15 min 1.8
W/m2 Philips TL40W/12;
thereafter recovery) /
shoots		 Stress mock 24 h (shoot) Stress treatments 0.48  
0.74  
34 Cauline leaves Col-0 no treatment / cauline
leaves		 Control for tissue data Developmental series; organs / tissues at different ages 0.42  
0.55  
35 2,3,5-Triiodobenzoic acid3 h Col-0 10 µM TIBA /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.40  
0.54  
36 Salicylic Acid 3 h Col-0 10µM salicylic acid
/ seedlings		 Mock 3 h Effect of other inhibitors on seedlings 0.40  
0.55  
37 B.cinerea 18 h infection CS6673 B. cinerea infection /
leaf		 Mock 18 h Botrytis cinerea infection 0.40  
0.76  
38 Wounding Stress3 h (shoot) Col-0 wounding (punctured with
pins at beginning of
treatment) / shoots		 Stress mock 3 h (shoot) Stress treatments 0.39  
0.65  
39 Dark 4 h pls RedLight 1min Col-0 1 min. red light pulse
followed by 4 h of
darkness / seedlings		 Dark 4 h Light treatments -0.38  
-0.52  
40 AvrRpm1 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato avrRpm1 harvested
after 2h / leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.37  
0.70  
41 Mutant arf2 (etiol) arf2 mock / etiol seedling Col (etiol) GEO bulk 0.35  
0.51  
42 Estradiol4 days Col Estradiol 10 µM /
seedling		 Col GEO bulk 0.31  
0.54  
43 2,4,6-trichlorophenoxyacetic acid 3 h Col-0 10 µM 2,4,6T /
seedling		 Mock 3 h Effect of auxin inhibitors on seedlings 0.26  
0.53  
44 FarRed Light 45min Col-0 continuous far red light
/ seedlings		 White Light 45min Light treatments -0.17  
-0.54  
45 DC3000 hrcC 2 h (leaf) Col-0 infiltrated with 108
cfu/ml P. syringae pv.
tomato DC3000 hrcC-
harvested after 2h /
leaves		 Mock 2 h (leaf) Pseudomonas syringae pv. tomato or pv. phaseolicola infection 0.15  
0.52  
46 Mutant sav3-2 (SH) sav3-2 Low R:FR light /
seedling		 Col-0 (SH) GEO bulk -0.05  
0.52